TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144475.2 - phase: 0 /pseudo
         (656 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW164016                                                               28  3.6

>AW164016 
          Length = 357

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +2

Query: 383 WK--VTGKVFGSGMAHIASKPL 402
           WK  VTGK+F SG+AH A  PL
Sbjct: 110 WKLHVTGKLFHSGLAHKAINPL 175


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.356    0.161    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,924,968
Number of Sequences: 28460
Number of extensions: 151948
Number of successful extensions: 2062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 1642
length of query: 656
length of database: 4,897,600
effective HSP length: 96
effective length of query: 560
effective length of database: 2,165,440
effective search space: 1212646400
effective search space used: 1212646400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 58 (26.9 bits)