TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144475.11 - phase: 0 /pseudo
         (74 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18168 homologue to UP|Q8GSN4 (Q8GSN4) Non-cell-autonomous heat...   151  3e-38
AW720237                                                              125  1e-30
BP041494                                                              117  5e-28
BP083571                                                              117  5e-28
TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment),...   106  7e-25
TC9540                                                                 26  1.6
TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting prote...    24  6.1
TC19803 similar to UP|O65568 (O65568) Serine carboxypeptidase II...    23  7.9

>TC18168 homologue to UP|Q8GSN4 (Q8GSN4) Non-cell-autonomous heat shock
           cognate protein 70, partial (23%)
          Length = 508

 Score =  151 bits (381), Expect = 3e-38
 Identities = 72/74 (97%), Positives = 73/74 (98%)
 Frame = +2

Query: 1   MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN 60
           MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKN
Sbjct: 59  MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN 238

Query: 61  QVAMNPTNTVFDAK 74
           QVAMNP NTVFDAK
Sbjct: 239 QVAMNPINTVFDAK 280


>AW720237 
          Length = 459

 Score =  125 bits (315), Expect = 1e-30
 Identities = 60/69 (86%), Positives = 63/69 (90%)
 Frame = +3

Query: 6   EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMN 65
           +  AIGIDLGTTYSCVGVW +DRVEIIANDQGNRTTPSYV FT+SERLIGDAAKNQVA N
Sbjct: 33  QATAIGIDLGTTYSCVGVWMNDRVEIIANDQGNRTTPSYVGFTESERLIGDAAKNQVARN 212

Query: 66  PTNTVFDAK 74
           P NTVFDAK
Sbjct: 213 PINTVFDAK 239


>BP041494 
          Length = 572

 Score =  117 bits (292), Expect = 5e-28
 Identities = 55/62 (88%), Positives = 58/62 (92%)
 Frame = +1

Query: 1   MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN 60
           M G+GE PAIGIDLGTTYSCVGVWQ+DRVEII NDQGNRTTPSYVAFTD ERLIGDAAKN
Sbjct: 61  MVGEGESPAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDFERLIGDAAKN 240

Query: 61  QV 62
           Q+
Sbjct: 241 QM 246


>BP083571 
          Length = 423

 Score =  117 bits (292), Expect = 5e-28
 Identities = 58/72 (80%), Positives = 63/72 (86%), Gaps = 2/72 (2%)
 Frame = +1

Query: 1   MAGKGEGPAIGIDLGTTYSCVGVWQ--HDRVEIIANDQGNRTTPSYVAFTDSERLIGDAA 58
           MA K EGPAIGIDLGTTYSCV VWQ  +DR EII N+QGNRTTPS+VAFTD++RLIGDAA
Sbjct: 145 MATKYEGPAIGIDLGTTYSCVAVWQEQNDRAEIIHNEQGNRTTPSFVAFTDTQRLIGDAA 324

Query: 59  KNQVAMNPTNTV 70
           KNQ A NPTNTV
Sbjct: 325 KNQAATNPTNTV 360


>TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment), partial
           (63%)
          Length = 981

 Score =  106 bits (265), Expect = 7e-25
 Identities = 50/68 (73%), Positives = 57/68 (83%)
 Frame = +1

Query: 7   GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNP 66
           G  IGIDLGTTYSCVGV+++  VEIIANDQGNR TPS+VAF D ERLIG+AAKNQ A+NP
Sbjct: 145 GTVIGIDLGTTYSCVGVYRNGHVEIIANDQGNRITPSWVAFNDGERLIGEAAKNQFAVNP 324

Query: 67  TNTVFDAK 74
             T+FD K
Sbjct: 325 ERTIFDVK 348


>TC9540 
          Length = 817

 Score = 25.8 bits (55), Expect = 1.6
 Identities = 13/34 (38%), Positives = 16/34 (46%)
 Frame = -3

Query: 9   AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTP 42
           +IG+        VG WQ+D    IA  Q N  TP
Sbjct: 308 SIGVATKLASITVGAWQYDPSNAIAIAQRNTVTP 207


>TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4,
           partial (14%)
          Length = 598

 Score = 23.9 bits (50), Expect = 6.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 15  GTTYSCVGVWQ 25
           GTT+SC  VWQ
Sbjct: 132 GTTFSCTKVWQ 164


>TC19803 similar to UP|O65568 (O65568) Serine carboxypeptidase II - like
           protein (Serine carboxypeptidase II-like protein),
           partial (36%)
          Length = 593

 Score = 23.5 bits (49), Expect = 7.9
 Identities = 12/43 (27%), Positives = 20/43 (45%)
 Frame = -2

Query: 28  RVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTV 70
           R+ I  ++     +PS+V   D  R++  A    +   PTN V
Sbjct: 262 RILICLHEPVEECSPSFVIDRDVARIVCKAGVEVLTREPTNLV 134


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 965,472
Number of Sequences: 28460
Number of extensions: 8054
Number of successful extensions: 33
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of query: 74
length of database: 4,897,600
effective HSP length: 50
effective length of query: 24
effective length of database: 3,474,600
effective search space: 83390400
effective search space used: 83390400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)