BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144474.7 - phase: 0
(329 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI418703 150 3e-37
BP051241 46 7e-06
CB826981 30 0.56
TC15181 weakly similar to UP|Q03991 (Q03991) Merozoite surface a... 30 0.56
TC13202 30 0.73
TC10111 similar to UP|AAS49048 (AAS49048) At3g16760, partial (20%) 30 0.73
TC17259 weakly similar to UP|Q94KL5 (Q94KL5) BEL1-like homeobox ... 30 0.73
BP034914 29 1.2
TC14845 29 1.2
BP042964 28 1.6
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 28 1.6
TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), parti... 28 1.6
TC9803 28 2.1
AV411437 28 2.1
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 28 2.8
TC13099 weakly similar to UP|CBL9_ARATH (Q9FJ13) COBRA-like prot... 28 2.8
TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%) 28 2.8
AV413574 27 3.6
TC13676 weakly similar to UP|O80500 (O80500) At2g44600 protein (... 27 4.7
AV781278 27 4.7
>BI418703
Length = 423
Score = 150 bits (379), Expect = 3e-37
Identities = 91/140 (65%), Positives = 99/140 (70%), Gaps = 21/140 (15%)
Frame = +3
Query: 1 MKGMLTLHLWNP---PPRFYT---------PSLS-----TKPP-LSISAT---SSPELLT 39
MKG++ L LWNP PPR PSLS T+P LSISAT + LT
Sbjct: 12 MKGVV-LQLWNPQPPPPRLQLHPLSPLPSLPSLSFSLHQTRPSKLSISATVESTETHQLT 188
Query: 40 AKERRRLRNERRESNATNWKEEVENKLIQKTKKVNKSWKDELNLDNLMKLGPQWWGVRVS 99
A+ERRRLRNERRE TNWKEEVE KLI+K KK NKSW DELNLDNLMKLGPQWW VRVS
Sbjct: 189 ARERRRLRNERREG--TNWKEEVEEKLIKKPKKENKSWMDELNLDNLMKLGPQWWVVRVS 362
Query: 100 RVKGQYTAEALARSLAKFFP 119
R+K QYTA+ALARSLAK FP
Sbjct: 363 RIKAQYTAQALARSLAKHFP 422
>BP051241
Length = 257
Score = 46.2 bits (108), Expect = 7e-06
Identities = 22/29 (75%), Positives = 26/29 (88%)
Frame = -1
Query: 301 TKMATVHFTMFGKENIVDLDVSEIVPETN 329
T+MATV +T+FGKENIV+LDVSEI ETN
Sbjct: 257 TQMATVLYTIFGKENIVELDVSEIALETN 171
>CB826981
Length = 591
Score = 30.0 bits (66), Expect = 0.56
Identities = 19/64 (29%), Positives = 32/64 (49%)
Frame = +3
Query: 198 DMEAIFKQAKVEQENADKAFEEEEKKAAVNSGNPNKELESDVSKAIVDSKPKRGSRKTSN 257
D+EAI +E ++ +AF E + + N +LESD + ++ + R+TSN
Sbjct: 336 DVEAIDDDDVIE--SSPRAFAEAKNNSRRNRARAVVDLESDDQTRVTNNNRNKRRRETSN 509
Query: 258 QLTI 261
Q I
Sbjct: 510 QTII 521
>TC15181 weakly similar to UP|Q03991 (Q03991) Merozoite surface antigen 1
(Fragment), partial (16%)
Length = 539
Score = 30.0 bits (66), Expect = 0.56
Identities = 19/64 (29%), Positives = 32/64 (49%)
Frame = +2
Query: 198 DMEAIFKQAKVEQENADKAFEEEEKKAAVNSGNPNKELESDVSKAIVDSKPKRGSRKTSN 257
D+EAI +E ++ +AF E + + N +LESD + ++ + R+TSN
Sbjct: 335 DVEAIDDDDVIE--SSPRAFAEAKNNSRRNRARAVVDLESDDQTRVTNNNRNKRRRETSN 508
Query: 258 QLTI 261
Q I
Sbjct: 509 QTII 520
>TC13202
Length = 431
Score = 29.6 bits (65), Expect = 0.73
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 11 NPPPRFYTPSLSTKPPLSISATSSPELLTAKERRRLRNERRES 53
N PP T + S P S++AT++ ERR R ++RES
Sbjct: 190 NAPPP*VTAAASLSSPASMAATTAITHSQRHERRHQRKDKRES 318
>TC10111 similar to UP|AAS49048 (AAS49048) At3g16760, partial (20%)
Length = 572
Score = 29.6 bits (65), Expect = 0.73
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Frame = -3
Query: 9 LWNPPPRFYTPSL-------STKPPLSI 29
L+NPP FYTP L TKPPLS+
Sbjct: 147 LYNPPLPFYTPQLLCNMKPCMTKPPLSL 64
>TC17259 weakly similar to UP|Q94KL5 (Q94KL5) BEL1-like homeobox 4,
partial (6%)
Length = 552
Score = 29.6 bits (65), Expect = 0.73
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = +1
Query: 18 TPSLSTKPPLSISATSSPELLTAKERRRLRNERRESNAT 56
TPS +T PP + + + P +L A R+ SNAT
Sbjct: 34 TPSATTPPPPTFQSENDPSVLNAINRQGFLENHEYSNAT 150
>BP034914
Length = 544
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/61 (27%), Positives = 31/61 (49%)
Frame = +3
Query: 18 TPSLSTKPPLSISATSSPELLTAKERRRLRNERRESNATNWKEEVENKLIQKTKKVNKSW 77
TPS S+ S ++ S + + RRR + RR S+ + +E ++ +K KK ++
Sbjct: 63 TPSPSSSSSSSTASDSDSDSDRSSRRRREKERRRRSDGGSKRERESSRRREKRKKRDRDR 242
Query: 78 K 78
K
Sbjct: 243 K 245
>TC14845
Length = 1110
Score = 28.9 bits (63), Expect = 1.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 8 HLWNPPPRFYTPSLSTKPPLSISATSSPELLTAKERRRLRNERRESNATNWKEEV 62
H P P+ TPSLS PP S ++ + + RR + S+ T + +V
Sbjct: 317 HSSKPSPQSTTPSLSLSPPSEHSPATTTRCFSPRRRRSPSSIFSRSSVTRFGRKV 481
>BP042964
Length = 575
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 12 PPPRFYTPSLSTKPPLSISATSSPELLTAKERR 44
PPP TPS +T+PP + S P T++ R
Sbjct: 152 PPPATSTPSNTTQPPSTARTFSPPTASTSQSSR 250
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +2
Query: 211 ENADKAFEEEEKKAAVNSGNPNKELESDVSKAIVDSKPKRGSRKTSNQLT-------ITE 263
E +D E +E AA P+KE + D SK+ + + +KTS ++ E
Sbjct: 14 ELSDAKDESQENVAA-----PHKESDDDESKSEEEEDKSKAQKKTSKKIVKEGSGSKAGE 178
Query: 264 EASSAKKKP 272
SAKK P
Sbjct: 179 RTKSAKKTP 205
>TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), partial (16%)
Length = 513
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 5 LTLHLWNPPPRFYTPS--LSTKPPLSISATSSP 35
L + WNPPP TP+ ++ PP S + +SP
Sbjct: 217 LPIPRWNPPPPSRTPTSTYTSTPPFSAAPNTSP 315
>TC9803
Length = 696
Score = 28.1 bits (61), Expect = 2.1
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 197 DDMEAIFKQAKVEQENADKAFEEEEKKAAVNSGNPNKELESDVSKAIVDSKPKRGSRKTS 256
D + + ++ E + ++ +E+K AA NS SK V + + S K
Sbjct: 140 DTLIRLIEKENQEYDERERQARKEKKLAAKNS---------TPSKRAVPRQAESPSLKKR 292
Query: 257 NQLTITEEASSAKKK 271
QLT+ + SS KKK
Sbjct: 293 KQLTMDDYLSSGKKK 337
>AV411437
Length = 417
Score = 28.1 bits (61), Expect = 2.1
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Frame = +3
Query: 41 KERRRLRNERRESNATNWKEEVENKLIQKTKKVNKSWKDELNLDN---LMKLGPQWW 94
K+RRR R +++ NW + K I KT N K+ NL +++L +WW
Sbjct: 60 KKRRRRRKKKKTGLMANWNSLMMMKQILKT--TNWKLKEAANLKMPKWVVQLRLRWW 224
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 27.7 bits (60), Expect = 2.8
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 9/79 (11%)
Frame = +1
Query: 204 KQAKVEQENADKAFEEEEK---------KAAVNSGNPNKELESDVSKAIVDSKPKRGSRK 254
K+ K +QEN + A +EEK K V G+P+ + K D + + +
Sbjct: 97 KKKKKDQENGEVASSDEEKAEKEKKKKHKVKVEDGSPDLDQSEKKKKKKKDQDAEDNAAE 276
Query: 255 TSNQLTITEEASSAKKKPK 273
SN E+ S KK K
Sbjct: 277 ISNG---KEDRKSEKKHKK 324
>TC13099 weakly similar to UP|CBL9_ARATH (Q9FJ13) COBRA-like protein 9
precursor, partial (14%)
Length = 426
Score = 27.7 bits (60), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 3 GMLTLHLWNPPPRFYTPSLSTKPPLSISATSSP 35
G T+ W+PPP +P+ PP + SSP
Sbjct: 243 GFSTMSSWSPPPMRCSPTGLPSPPPLATVPSSP 341
>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
Length = 826
Score = 27.7 bits (60), Expect = 2.8
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 232 NKELESDVSKAIVDSKPKRGSRKTSNQLTITEEASSAKKKPKLVTGSTVQIISGSFLGFA 291
++ L++ + +VD+ S+ TSN L + +S + P + VQ+ S SFL F
Sbjct: 545 DRNLKASIRARVVDA-----SQVTSNALALVNRFASKIETP*AWSLGLVQLCSNSFLAFP 709
Query: 292 ----GTLKKLNSKTKMATVHFTMFG 312
T L K ++ ++FG
Sbjct: 710 LC*HATPSPLPQKWHACVLNKSLFG 784
>AV413574
Length = 382
Score = 27.3 bits (59), Expect = 3.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 5 LTLHLWNPPPRFYTPSLSTKPPLSISATSSPELL 38
L L L+NPP +T + ST+PP S S E L
Sbjct: 22 LFLFLFNPPQPKHTAAASTEPPCSDSVCHIKEPL 123
>TC13676 weakly similar to UP|O80500 (O80500) At2g44600 protein
(At2g44600/F16B22.9), partial (9%)
Length = 698
Score = 26.9 bits (58), Expect = 4.7
Identities = 12/45 (26%), Positives = 27/45 (59%)
Frame = +2
Query: 30 SATSSPELLTAKERRRLRNERRESNATNWKEEVENKLIQKTKKVN 74
SA SP+ TA++RRR + + E + + V+++ Q+ ++++
Sbjct: 551 SAKDSPQRATAEQRRRRQRKGSEGSGSCQAFSVQDRTRQRRRRIH 685
>AV781278
Length = 220
Score = 26.9 bits (58), Expect = 4.7
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -3
Query: 7 LHLWNPPPRFYTPSLSTKPPLSIS 30
+H+WNPP RF LS P+ ++
Sbjct: 137 IHIWNPPVRFILL*LSWTSPICLA 66
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.129 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,024,299
Number of Sequences: 28460
Number of extensions: 65276
Number of successful extensions: 530
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of query: 329
length of database: 4,897,600
effective HSP length: 91
effective length of query: 238
effective length of database: 2,307,740
effective search space: 549242120
effective search space used: 549242120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144474.7