BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144474.3 + phase: 0
(449 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 880 0.0
TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain,... 876 0.0
TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain... 838 0.0
TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 599 e-172
TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, c... 385 e-108
TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin bet... 379 e-106
TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 354 2e-98
TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain... 347 2e-96
TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain... 259 8e-70
TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%) 206 8e-54
TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, p... 189 1e-51
TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alph... 196 7e-51
AV407159 164 2e-41
TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (F... 157 4e-39
TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 134 4e-32
BF177912 86 2e-17
TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment),... 80 9e-16
TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Eug... 72 2e-13
BP037355 57 8e-09
BP034655 32 0.21
>TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , complete
Length = 1685
Score = 880 bits (2275), Expect = 0.0
Identities = 427/445 (95%), Positives = 438/445 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60
MREILHIQGGQCGNQIGAKFWEVVCAEHGID TG+Y GDS+LQLERINVYYNEAS GRFV
Sbjct: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
Query: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAEN DCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 652 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 831
Query: 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMM 300
RFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPLTSRGSQQYRALSVPE+TQQMWDSKNMM
Sbjct: 832 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALSVPELTQQMWDSKNMM 1011
Query: 301 CAADPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360
CAADPRHGRYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKSTVCDIPPTG
Sbjct: 1012CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTG 1191
Query: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 1192LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 1371
Query: 421 EYQQYQDATAEEDEYEDEEEDYQQE 445
EYQQY DATA+EDEYE+EE +Y+ E
Sbjct: 1372EYQQYPDATADEDEYEEEEGEYEPE 1446
>TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain, complete
Length = 1689
Score = 876 bits (2263), Expect = 0.0
Identities = 423/447 (94%), Positives = 438/447 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60
MREILHIQGGQCGNQIGAKFWEVVCAEHGID TGRY G++D+QLER+NVYYNEAS GRFV
Sbjct: 115 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 294
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 295 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 474
Query: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAEN DCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 475 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 654
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 655 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 834
Query: 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMM 300
RFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPLTSRGSQQYRAL+VPE+TQQMWD+KNMM
Sbjct: 835 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 1014
Query: 301 CAADPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360
CAADPRHGRYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG
Sbjct: 1015CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 1194
Query: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 1195LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 1374
Query: 421 EYQQYQDATAEEDEYEDEEEDYQQEHD 447
EYQQYQDATA+++ Y+ E+ED QE D
Sbjct: 1375EYQQYQDATADDEGYDYEDEDEVQEED 1455
>TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain (Beta-3
tubulin), complete
Length = 2208
Score = 838 bits (2165), Expect = 0.0
Identities = 397/441 (90%), Positives = 425/441 (96%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60
MREILH+Q GQCGNQIG KFWEV+C EHGID +G YVG+S LQLER+NVYYNEASGGR+V
Sbjct: 66 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDQSGSYVGNSHLQLERVNVYYNEASGGRYV 245
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDS+RSGPYG+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 246 PRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 425
Query: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAEN DCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 426 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 605
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLS+HQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLIS TMSGVTCCL
Sbjct: 606 EPYNATLSIHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 785
Query: 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMM 300
RFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPLTSRGSQQY +L++PE+TQQMWD++NMM
Sbjct: 786 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSSLTIPELTQQMWDARNMM 965
Query: 301 CAADPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360
CAADPRHGRYLTASA+FRGKMSTKEVD+QMINVQNKNSSYFVEWIPNNVKS+VCDIPPTG
Sbjct: 966 CAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTG 1145
Query: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M+STFIGNSTSIQEMFRRVSEQFT MF+RKAFLHWYT EGMDEMEFTEAESNMNDLV+
Sbjct: 1146LSMSSTFIGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVA 1325
Query: 421 EYQQYQDATAEEDEYEDEEED 441
EYQQYQDATA E+E DEEE+
Sbjct: 1326EYQQYQDATAVEEEEGDEEEE 1388
>TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (75%)
Length = 985
Score = 599 bits (1544), Expect = e-172
Identities = 285/304 (93%), Positives = 299/304 (97%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID +G+Y GD++LQLERINVYYNEA+GGR+V
Sbjct: 72 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 251
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 252 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 431
Query: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAEN DCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 432 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 611
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHL+SATMSGVTCCL
Sbjct: 612 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCL 791
Query: 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMM 300
RFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPLTSRGSQQYRAL+VPE+TQQMWDSKNMM
Sbjct: 792 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 971
Query: 301 CAAD 304
CAAD
Sbjct: 972 CAAD 983
>TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, complete
Length = 1907
Score = 385 bits (989), Expect = e-108
Identities = 191/453 (42%), Positives = 285/453 (62%), Gaps = 11/453 (2%)
Frame = +2
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQL--ERINVYYNEASGGR 58
MRE + + GQ G Q+G WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 224 MRECISVHIGQAGIQVGNACWELYCLEHGIGPDGQMPSDKTVGGGDDAFNTFFSETGAGK 403
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 404 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 583
Query: 119 VVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
+RK A+N LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+V+PSP+VS +
Sbjct: 584 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 763
Query: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 764 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 943
Query: 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKN 298
LRF G LN D+ + NLVP+PR+HF + +AP+ S + LSV EIT ++ +
Sbjct: 944 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 1123
Query: 299 MMCAADPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP 358
MM DPRHG+Y+ ++RG + K+V+ + +++ K + FV+W P K + PP
Sbjct: 1124MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPP 1303
Query: 359 T--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
T ++ A I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 1304TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSE 1483
Query: 411 AESNMNDLVSEYQQYQDATAEEDEYEDEE-EDY 442
A DL + + Y++ AE E D++ EDY
Sbjct: 1484AR---EDLAALEKDYEEVGAESGEGGDDDIEDY 1573
>TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin beta-4 chain
{Oryza sativa (japonica cultivar-group);}, partial (42%)
Length = 627
Score = 379 bits (972), Expect = e-106
Identities = 181/189 (95%), Positives = 186/189 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60
MREILHIQGGQCGNQIG+KFWEVVC EHG+DPTGRYVG+SDLQLER+NVYYNEAS GRFV
Sbjct: 61 MREILHIQGGQCGNQIGSKFWEVVCDEHGLDPTGRYVGNSDLQLERVNVYYNEASCGRFV 240
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 241 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 420
Query: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAEN DCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 421 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 600
Query: 181 EPYNATLSV 189
EPYNATLSV
Sbjct: 601 EPYNATLSV 627
>TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (44%)
Length = 600
Score = 354 bits (908), Expect = 2e-98
Identities = 169/179 (94%), Positives = 174/179 (96%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDS+LQLERINVYYNEASGGR+V
Sbjct: 64 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 243
Query: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 244 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 423
Query: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
RKEAEN DCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 424 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 600
>TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain (Alpha-3
tubulin), complete
Length = 1615
Score = 347 bits (890), Expect = 2e-96
Identities = 183/455 (40%), Positives = 271/455 (59%), Gaps = 13/455 (2%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQL---ERINVYYNEASGG 57
MREI+ I GQ G Q+G WE+ C EHGI P G DS + + N +++E G
Sbjct: 105 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 284
Query: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D L
Sbjct: 285 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 464
Query: 118 DVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
D VRK A+N LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 465 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 644
Query: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 645 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 824
Query: 238 CCLRFPGQLNSDLRKLAVNLVPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSK 297
LRF G +N D+ + NLVP+PR+HF + +AP+ S + LSVPEIT +++
Sbjct: 825 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 1004
Query: 298 NMMCAADPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK------- 350
+MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K
Sbjct: 1005SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGIHYQP 1184
Query: 351 -STVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQF--TAMFRRKAFLHWYTGEGMDEME 407
S V P ++ A I N ++ E+F R+ QF T L + G G +
Sbjct: 1185PSVVPGGDPAKVQRAVCMIRNHPAVAEVFSRLDPQFDLTVCPEGPCPLVCW*GYGRRGV- 1361
Query: 408 FTEAESNMNDLVSEYQQYQDATAEEDEYEDEEEDY 442
T+A DL + + Y++ AE + E+E EDY
Sbjct: 1362LTKAR---EDLAALEKDYEEVGAEGADDEEEGEDY 1457
>TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain (Beta-7
tubulin), partial (30%)
Length = 659
Score = 259 bits (661), Expect = 8e-70
Identities = 124/133 (93%), Positives = 132/133 (99%)
Frame = +3
Query: 309 RYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFI 368
RYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFI
Sbjct: 3 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 182
Query: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA
Sbjct: 183 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 362
Query: 429 TAEEDEYEDEEED 441
TA+++EYE+EEE+
Sbjct: 363 TADDEEYEEEEEE 401
>TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)
Length = 591
Score = 206 bits (523), Expect = 8e-54
Identities = 95/135 (70%), Positives = 116/135 (85%)
Frame = +3
Query: 304 DPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
DPR+GRYLTASA FRGK+STKEV+EQM +Q KNS F++WIPN +K++VCD+ PTG M
Sbjct: 9 DPRNGRYLTASAYFRGKVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASVCDVAPTGETM 188
Query: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
++ FIGNST+IQ++F+RV F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSE Q
Sbjct: 189 SAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSELQ 368
Query: 424 QYQDATAEEDEYEDE 438
QY+ A+ E +E EDE
Sbjct: 369 QYEAASVEGEEEEDE 413
>TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, partial
(27%)
Length = 673
Score = 189 bits (479), Expect(2) = 1e-51
Identities = 90/108 (83%), Positives = 98/108 (90%)
Frame = +2
Query: 341 FVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400
FVEWIPNNVKS+VCDIPP LKM+STFIGNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 47 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 226
Query: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDEYEDEEEDYQQEHDE 448
EGMDEMEFTEAESNMNDLV+EYQQYQDATA+E+E DE E+ E +
Sbjct: 227 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEENAYEEQQ 370
Score = 31.2 bits (69), Expect(2) = 1e-51
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 326 VDEQMINVQNKNSS 339
VDEQMINVQNKNSS
Sbjct: 1 VDEQMINVQNKNSS 42
>TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5 chain,
partial (44%)
Length = 739
Score = 196 bits (498), Expect = 7e-51
Identities = 90/199 (45%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQL--ERINVYYNEASGGR 58
MRE++ I GQ G Q+G WE+ C EHGI P G D+ + + + N +++E G+
Sbjct: 141 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 320
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
VPRA+ +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 321 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 500
Query: 119 VVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
RK A+N LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 501 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 680
Query: 179 VVEPYNATLSVHQLVENAD 197
VVEPYN+ LS H L+E+ D
Sbjct: 681 VVEPYNSVLSTHSLLEHTD 737
>AV407159
Length = 301
Score = 164 bits (416), Expect = 2e-41
Identities = 76/96 (79%), Positives = 86/96 (89%), Gaps = 3/96 (3%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVG---DSDLQLERINVYYNEASGG 57
MREILHIQGGQCGNQIG+K+WEV+C EHGID TG++ G D+D QLERINVYYNEAS G
Sbjct: 12 MREILHIQGGQCGNQIGSKWWEVICDEHGIDHTGKFTGTDSDTDFQLERINVYYNEASAG 191
Query: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFG 93
R+VPRAVLMDLEPGTM+S+RSGPYG+I RPDN VFG
Sbjct: 192 RYVPRAVLMDLEPGTMESIRSGPYGKIVRPDNVVFG 299
>TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (Fragment),
partial (34%)
Length = 797
Score = 157 bits (396), Expect = 4e-39
Identities = 79/84 (94%), Positives = 82/84 (97%), Gaps = 1/84 (1%)
Frame = +2
Query: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 209 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 388
Query: 424 QYQDATAEED-EYEDEEEDYQQEH 446
QYQDATAE+D EYEDEEE+ +QEH
Sbjct: 389 QYQDATAEDDGEYEDEEEE-EQEH 457
Score = 127 bits (319), Expect = 4e-30
Identities = 70/107 (65%), Positives = 76/107 (70%), Gaps = 9/107 (8%)
Frame = +1
Query: 300 MCAADPRHGRYLTASAIFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
MCAADPRHGRYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDI P
Sbjct: 16 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPK 195
Query: 360 GLKMASTFIG----NSTSIQEMFRRV-----SEQFTAMFRRKAFLHW 397
GL M NS ++QE R V E F A+ +HW
Sbjct: 196 GLSMGIHIHWQLNLNSGNVQESERAVHCHV*EEGFLAL------VHW 318
>TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , partial (15%)
Length = 699
Score = 134 bits (336), Expect = 4e-32
Identities = 62/66 (93%), Positives = 66/66 (99%)
Frame = +2
Query: 376 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDEY 435
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA+EDEY
Sbjct: 2 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 181
Query: 436 EDEEED 441
E+EEE+
Sbjct: 182 EEEEEE 199
>BF177912
Length = 391
Score = 85.5 bits (210), Expect = 2e-17
Identities = 40/96 (41%), Positives = 57/96 (58%), Gaps = 2/96 (2%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQL--ERINVYYNEASGGR 58
MRE + I GQ G Q+G WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 278
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ 94
VPRAV +DLEP +D VR+G Y Q+F P+ + G+
Sbjct: 279 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGK 386
>TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment), partial
(89%)
Length = 597
Score = 79.7 bits (195), Expect = 9e-16
Identities = 41/115 (35%), Positives = 65/115 (55%), Gaps = 8/115 (6%)
Frame = +2
Query: 336 KNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTA 387
K + FV+W P K + PP+ ++ A I N+T++ E+F R+ +F
Sbjct: 2 KRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 181
Query: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDEYEDEEEDY 442
M+ ++AF+HWY GEGM+E EF+EA DL + + Y++ AE + E+E EDY
Sbjct: 182 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGAEGADDEEEGEDY 337
>TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Euglena
gracilis {Euglena gracilis;} , partial (16%)
Length = 494
Score = 71.6 bits (174), Expect = 2e-13
Identities = 32/75 (42%), Positives = 51/75 (67%)
Frame = +3
Query: 368 IGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y++
Sbjct: 9 ISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEE 179
Query: 428 ATAEEDEYEDEEEDY 442
AE +E E++EE Y
Sbjct: 180 VGAEGEEGEEDEEGY 224
>BP037355
Length = 422
Score = 56.6 bits (135), Expect = 8e-09
Identities = 26/58 (44%), Positives = 35/58 (59%)
Frame = +2
Query: 53 EASGGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
E G+ VPRAV +DLEP ++ V +G Y Q+F P+ + G+ A NN A GH T A
Sbjct: 167 ETGSGKHVPRAVFVDLEPTVINEVCAGTYRQLFHPEQLISGKEDAANNLAGGHCTGNA 340
>BP034655
Length = 517
Score = 32.0 bits (71), Expect = 0.21
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +1
Query: 404 DEMEFTEAESNMNDLVSEYQQYQDATAEEDEYEDEEEDY 442
DE E E E + E ++ ++ EED+ EDE+EDY
Sbjct: 142 DEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDY 258
Score = 26.6 bits (57), Expect = 9.0
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = +1
Query: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATAEEDEYEDEEEDYQQEH 446
G+ + + E E + E ++ ++ EEDE ED+EED +++
Sbjct: 127 GLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDE-EDDEEDEDEDY 258
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,067,062
Number of Sequences: 28460
Number of extensions: 87623
Number of successful extensions: 603
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of query: 449
length of database: 4,897,600
effective HSP length: 93
effective length of query: 356
effective length of database: 2,250,820
effective search space: 801291920
effective search space used: 801291920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144474.3