TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144474.14 - phase: 1 /pseudo
         (42 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13247                                                                26  2.0
TC10780 similar to UP|O04095 (O04095) Phosphatidylinositol-4-pho...    25  3.4
AV769547                                                               25  4.5
TC13074 similar to GB|AAO42946.1|28416831|BT004700 At3g18880 {Ar...    24  5.8
TC11530                                                                24  5.8
BP043412                                                               24  5.8
AV412404                                                               24  7.6
AV410186                                                               24  7.6
TC15963 similar to GB|AAF24126.1|6690399|AF121673 soluble starch...    23  10.0
TC13289 weakly similar to UP|O22512 (O22512) Grr1, partial (11%)       23  10.0
AV408371                                                               23  10.0

>TC13247 
          Length = 441

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 4   ITSIVFLHSLLLLHLYQFPN-HRCLSQMSRRS 34
           I+  +++H+LLL  L +FP    C  Q++ RS
Sbjct: 408 ISDTLYIHNLLLYFLLEFPE*EECSVQLTLRS 313


>TC10780 similar to UP|O04095 (O04095) Phosphatidylinositol-4-phosphate
           5-kinase isolog, 89655-95590, partial (11%)
          Length = 583

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 3   YITSIVFLHSLLLLHLYQFPNHR 25
           Y  S + LHS+   H+Y F N++
Sbjct: 388 YFVSSILLHSI*FFHMYIFCNYK 456


>AV769547 
          Length = 416

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (70%)
 Frame = -1

Query: 16  LHLYQFPNHRCLSQMSRRSTS 36
           L+   FPNH+  SQ++R S+S
Sbjct: 248 LYFQNFPNHKH*SQLTRSSSS 186


>TC13074 similar to GB|AAO42946.1|28416831|BT004700 At3g18880 {Arabidopsis
           thaliana;}, partial (79%)
          Length = 673

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 11  HSLLLLHLYQFPNHRCLSQM 30
           HS  LLHL   PN + L+Q+
Sbjct: 166 HSYYLLHLLSSPNRQSLNQI 107


>TC11530 
          Length = 647

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 4   ITSIVFLHSLLLLHLYQFPN 23
           + S++FLH LLL + + FP+
Sbjct: 240 LVSLLFLHPLLLQYGFSFPH 181


>BP043412 
          Length = 467

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (51%)
 Frame = +2

Query: 4   ITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTSIAT 39
           + S + +  LLLL L  FP+H   S  SR S  I +
Sbjct: 278 LASFLGIFPLLLLPLG*FPSHSSSSAASRNSRCIGS 385


>AV412404 
          Length = 386

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 5  TSIVFLHSLLLLHLYQFPN 23
          +S + LHSLL L L+ FPN
Sbjct: 51 SSPLVLHSLLPLPLFPFPN 107


>AV410186 
          Length = 433

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 11/17 (64%), Positives = 13/17 (75%)
 Frame = +3

Query: 12 SLLLLHLYQFPNHRCLS 28
          SLLLL L   PNHRC++
Sbjct: 69 SLLLLLLPLKPNHRCVT 119


>TC15963 similar to GB|AAF24126.1|6690399|AF121673 soluble starch synthase
           {Arabidopsis thaliana;} , partial (24%)
          Length = 699

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = +3

Query: 3   YITSIVFLHSLLLLHLYQFPNHRC 26
           Y  SI+   S+  LH+ +FP H C
Sbjct: 453 YRRSILDFLSIYRLHMKKFPVHNC 524


>TC13289 weakly similar to UP|O22512 (O22512) Grr1, partial (11%)
          Length = 550

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 21  FPNHRCLSQMSRRSTSIAT 39
           FP H  +S + R STS++T
Sbjct: 409 FPAHERMSHLQRNSTSMST 353


>AV408371 
          Length = 407

 Score = 23.5 bits (49), Expect = 10.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 1  ENYITSIVFLHSLLLLHLYQFP 22
          EN+  S++ L  LLLL L+ FP
Sbjct: 67 ENFGNSLLLLFLLLLLLLFLFP 2


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,019,615
Number of Sequences: 28460
Number of extensions: 11163
Number of successful extensions: 152
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of query: 42
length of database: 4,897,600
effective HSP length: 18
effective length of query: 24
effective length of database: 4,385,320
effective search space: 105247680
effective search space used: 105247680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)