TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144459.10 + phase: 0 
         (167 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI417933                                                               36  0.003
TC8932 similar to UP|Q7YY80 (Q7YY80) Serine repeat antigen, prob...    27  1.8
BP072863                                                               27  2.3
BP067046                                                               27  2.3
TC8198 similar to UP|P93273 (P93273) PAFD103 protein (Fragment),...    27  2.3
BP057535                                                               26  3.0
BP058657                                                               26  4.0
TC15593 weakly similar to UP|AAR15453 (AAR15453) Nuclear divisio...    26  4.0
TC10351 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (20%)         25  5.2
BI420053                                                               25  8.9
TC8349                                                                 25  8.9
AV779952                                                               25  8.9
TC13291                                                                25  8.9
CB828269                                                               25  8.9
TC18800 weakly similar to UP|Q8GTD6 (Q8GTD6) Polygalacturonase i...    25  8.9

>BI417933 
          Length = 568

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELK-KRGENVFFCNKWQEFVEYYSIGYGCFI 69
           +P  F    G E+NNV  +  P G  + +     +G++      +   +  + I +   +
Sbjct: 251 VPKRFHEPVGYEINNVVQLQDPVGNTFNLSYYFNQGDHRIGAGLFN-ILSVHEIQHTVMV 427

Query: 70  SFKYEGNSKFSVIIFDATSVEISY 93
            F Y G ++F++ IFD  S EI Y
Sbjct: 428 HFLYRGQARFNIHIFDPFSREIRY 499


>TC8932 similar to UP|Q7YY80 (Q7YY80) Serine repeat antigen, probable,
           partial (13%)
          Length = 914

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = -2

Query: 69  ISFKYEGNSKFSVIIFDATSVEISYPFET 97
           I F ++G  KFS+ I+D    EI Y   T
Sbjct: 751 IQFVFQGEPKFSIRIYDVQLNEIHYRMNT 665


>BP072863 
          Length = 517

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 110 SSRKRSKVETCERLRKKVKNMSKYA 134
           SS+KR+  + C R+ K +   SKYA
Sbjct: 513 SSKKRTVADFCTRIHKDMLKQSKYA 439


>BP067046 
          Length = 556

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 46  ENVFFC--NKWQEFVEYYSIGYGCFISFKY 73
           ENVF    N W  F+ ++SIG  CF    Y
Sbjct: 447 ENVFLDQDNFWPSFMIHFSIGLACFCVSSY 358


>TC8198 similar to UP|P93273 (P93273) PAFD103 protein (Fragment), partial
           (65%)
          Length = 850

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 3/62 (4%)
 Frame = +3

Query: 85  DATSVEISYPFETPS---TNGEPKTNYPSSRKRSKVETCERLRKKVKNMSKYASKRVEDA 141
           D  S E+    + P+   TN  P          S V+  ERL+K      K +SK ++ A
Sbjct: 282 DKASKEVKESQDQPNSSDTNNGPDLAENPEEDASTVDVKERLKKVASLKKKKSSKEMDAA 461

Query: 142 AK 143
           AK
Sbjct: 462 AK 467


>BP057535 
          Length = 495

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 14/29 (48%), Positives = 16/29 (54%)
 Frame = -3

Query: 69  ISFKYEGNSKFSVIIFDATSVEISYPFET 97
           I F YEG SK S+ I+D    EI Y   T
Sbjct: 361 IRFVYEGESKCSIKIYDV*LREIHYRTNT 275


>BP058657 
          Length = 477

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 61  YSIGYGCFISFKYEGNSKFSVIIFDATSVEISYPFETPSTN 101
           Y IG+ C  +FK   +  F +I+F    + ++ PF  P ++
Sbjct: 345 YIIGF*CMPNFKN*VDLTFGLIVFFLCCLILAAPFSEPQSD 223


>TC15593 weakly similar to UP|AAR15453 (AAR15453) Nuclear division RFT1-like
           protein, partial (17%)
          Length = 753

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 46  ENVFFC--NKWQEFVEYYSIGYGCFISFKY 73
           ENVF    N W  F+ ++S+G  CF    Y
Sbjct: 106 ENVFLDQDNFWPSFMIHFSVGLACFCVSAY 195


>TC10351 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (20%)
          Length = 702

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 11/23 (47%), Positives = 12/23 (51%)
 Frame = -2

Query: 93  YPFETPSTNGEPKTNYPSSRKRS 115
           YP E P+T G P    PS  K S
Sbjct: 164 YPLEAPNTVGPPPQTAPSLAKHS 96


>BI420053 
          Length = 381

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +3

Query: 109 PSSRKRSKVETCERLRKKVKNMSKYASK------RVEDAAKELNPNNPYFR 153
           PSS + S     ++++ +V+N++  A        +VED + E+  +NPY R
Sbjct: 165 PSSLRAS----LDQIQSRVENLANVARSGPVRRPKVEDMSSEVVDSNPYSR 305


>TC8349 
          Length = 749

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 38  KMELKKRGENVFFCNKWQEFV 58
           + +L+ R E  FFC+ WQ+++
Sbjct: 268 EQQLQSRFEQ*FFCSWWQQWI 330


>AV779952 
          Length = 557

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
 Frame = -2

Query: 47  NVFFCN-KWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATS 88
           + F C  KW  F ++Y +     I+ K + NSK +V + D  S
Sbjct: 145 HAFLCRIKWFNFHKFYHLSSLDEITTK*QANSKIAVSVGDPRS 17


>TC13291 
          Length = 564

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 33 DGRVWKMELKK-----RGENVFFCNKWQEFVEYYSIGYGCFI 69
          D  VW + LKK     RG+  +    ++E +   SIGYGC I
Sbjct: 15 DSGVWSL-LKK*FIVVRGDKTYISGNFKESL---SIGYGCTI 128


>CB828269 
          Length = 409

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 143 KELNPNNPYFRSKI 156
           + LNPN+P+F+ KI
Sbjct: 344 QNLNPNHPFFKKKI 303


>TC18800 weakly similar to UP|Q8GTD6 (Q8GTD6) Polygalacturonase
           inhibitor-like protein (Fragment), partial (21%)
          Length = 363

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 56  EFVEYYSIGYGCFISFKYEGNSKFSVIIFDATSVEISY 93
           +F    S+ + C+++F Y  +  FSV  F    +E SY
Sbjct: 249 QFFH*SSMCFCCYVNFLYLSSYLFSVFHFFINKIEGSY 362


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,970,268
Number of Sequences: 28460
Number of extensions: 36876
Number of successful extensions: 218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of query: 167
length of database: 4,897,600
effective HSP length: 84
effective length of query: 83
effective length of database: 2,506,960
effective search space: 208077680
effective search space used: 208077680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)