BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144431.4 - phase: 0 /pseudo
(1510 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9602 weakly similar to UP|DPOA_ORYSA (O48653) DNA polymerase a... 130 2e-30
BP076374 115 5e-26
TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein... 33 0.44
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 33 0.44
BI418449 31 1.7
TC10436 similar to UP|Q93Z70 (Q93Z70) At2g19940/F6F22.3, partial... 30 3.7
BI419099 30 3.7
AV771422 29 6.3
TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12... 29 6.3
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 29 6.3
BP033767 28 8.3
BI417928 28 8.3
AV779361 28 8.3
>TC9602 weakly similar to UP|DPOA_ORYSA (O48653) DNA polymerase alpha
catalytic subunit , partial (3%)
Length = 674
Score = 130 bits (326), Expect = 2e-30
Identities = 60/74 (81%), Positives = 68/74 (91%)
Frame = +1
Query: 1437 RKYTEADLYKQLSYFCHVFDTVCYIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDR 1496
RKYTEADLYKQLSYFCHVFDT IEK+E KSRIP+EKELIKIRPIVD AST+QK+RDR
Sbjct: 1 RKYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDR 180
Query: 1497 CAFGWVKLQDLVVA 1510
CA+GWVKL+DLV++
Sbjct: 181 CAYGWVKLEDLVIS 222
>BP076374
Length = 391
Score = 115 bits (288), Expect = 5e-26
Identities = 65/80 (81%), Positives = 67/80 (83%)
Frame = -1
Query: 530 LQVSNFSTCSASQRVSWCKFEVIVDSPKDIRASSPSSSKITLVNPPVVVTAINLKTTINE 589
LQVSNFST SASQRVSWCKFEV VDSPKDIR SP S KIT PPVVV AINLKTT E
Sbjct: 391 LQVSNFSTRSASQRVSWCKFEVTVDSPKDIRI-SPPSLKITCEIPPVVVAAINLKTTY-E 218
Query: 590 KQNINEIVSASVVSCNMVKI 609
KQNINEIVSASVV C+MVK+
Sbjct: 217 KQNINEIVSASVVCCHMVKV 158
>TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein
(Fragment), partial (44%)
Length = 818
Score = 32.7 bits (73), Expect = 0.44
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 847 EYLLLHEFHKKKYIVPDKFSNYAKETKLTKRRVTHGVDDGNFDDADINDANYHNDASESD 906
++ +LH+ ++Y+ + S +K T+RR + D F +I++ N H+ +SD
Sbjct: 195 QHFILHQLGCQEYLRCRRHSRVQLRSKCTQRRGSDK-DKLRFLQLNISNCNLHHPTCDSD 371
Query: 907 HKKNK 911
H KN+
Sbjct: 372 H*KNR 386
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 32.7 bits (73), Expect = 0.44
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +2
Query: 562 SSPSSSKITLVNPPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKI--DTPMLASEWK 619
S+PSSS T V+PP VT N +T + ++ + + V + + A W
Sbjct: 425 STPSSSPSTTVSPPSTVTLPNTRTDLMPLSSLTKTATFCPVPLTSGNVFWRVTVRAGTWP 604
Query: 620 ---RPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNIKAGSN 656
R G L + + KL G+ F+ E ++ +++GS+
Sbjct: 605 TTWRFGSLERGSKVLKLSGSFRCNRFSGERSEPGLRSGSS 724
>BI418449
Length = 472
Score = 30.8 bits (68), Expect = 1.7
Identities = 13/46 (28%), Positives = 24/46 (51%)
Frame = +1
Query: 378 YSLFVWQGTLYQSCCVVVKNMQRCVYAIPSHPLHSTNEMIQLEKDV 423
++ + W +YQ CCV N + A+P+ L T ++ L+ +V
Sbjct: 40 FTFYNWMPFIYQCCCV---NFTTLIVAVPTTTLKCTTSLLPLDIEV 168
>TC10436 similar to UP|Q93Z70 (Q93Z70) At2g19940/F6F22.3, partial (30%)
Length = 628
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/83 (28%), Positives = 36/83 (42%)
Frame = -3
Query: 548 KFEVIVDSPKDIRASSPSSSKITLVNPPVVVTAINLKTTINEKQNINEIVSASVVSCNMV 607
KF +I PK++ S +SSK T N + L T+N N ++ + V+ M
Sbjct: 326 KFRMICQKPKNLSTSVATSSKNTNTNSLL*SCVSTLDRTLN-----NTLLLSQVLVPTMA 162
Query: 608 KIDTPMLASEWKRPGMLTHFTVI 630
+ T W G HFTV+
Sbjct: 161 SVKT-----NWTESGG-AHFTVV 111
>BI419099
Length = 586
Score = 29.6 bits (65), Expect = 3.7
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 579 TAINLKTTINEKQNINEIVSASVVSCNMVKI---DTPMLASEWKRPGMLTHFTVIRKLDG 635
+AI+ T I + I+ +V VV+ K D M W ++ ++I KLD
Sbjct: 214 SAISFATPITPGKAIDAVVIGKVVASGNPKFEKNDFVMGVFHWAEYSLVKEGSIINKLDS 393
Query: 636 NIFPMGFNTEV 646
+ FP+ ++ V
Sbjct: 394 SEFPLSYHLGV 426
>AV771422
Length = 381
Score = 28.9 bits (63), Expect = 6.3
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Frame = +2
Query: 695 VLLHRSQACRVPSSMWSKLGRLNR------STMPKLDRRGKTFGFGADP-------AIMS 741
+ H C +S W++LG R STM K DRR G +DP +I
Sbjct: 47 IFSHGFCRCEYRASWWARLGH*QRRLEKAFSTMAKCDRRSVVPGSQSDPKTILIRISISI 226
Query: 742 CVA 744
CVA
Sbjct: 227 CVA 235
>TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12470
{Arabidopsis thaliana;}, partial (18%)
Length = 507
Score = 28.9 bits (63), Expect = 6.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 85 R*RRRRGLVQNRFFPFLRRRIRW*IGETSTEER 117
R RRRR + R + + RRR RW*IG +++R
Sbjct: 224 RERRRRNRRRRRRWRWRRRRWRW*IGGQGSQQR 322
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 28.9 bits (63), Expect = 6.3
Identities = 14/34 (41%), Positives = 15/34 (43%), Gaps = 5/34 (14%)
Frame = -1
Query: 314 RSGGSEVVCYGWMAGG*E----WWR-WRWGGKCC 342
R GG W +GG WW WRWG CC
Sbjct: 305 RGGGGSRGGSWWSSGGSRGSCWWWSCWRWGRCCC 204
>BP033767
Length = 541
Score = 28.5 bits (62), Expect = 8.3
Identities = 23/72 (31%), Positives = 26/72 (35%)
Frame = -3
Query: 267 GRNGGGRQ*MW*RGFS*RESGVCERRRNGSETCCEKGGFYFECES**RSGGSEVVCYGWM 326
G GGGR+ W R VC R G GG GG + V + W
Sbjct: 347 GGEGGGRRRWWWRW-------VCGEERCGG--ILGGGGC---------GGGGKWVFWVWR 222
Query: 327 AGG*EWWRWRWG 338
G WW W WG
Sbjct: 221 *GRW*WWWWVWG 186
>BI417928
Length = 509
Score = 28.5 bits (62), Expect = 8.3
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +3
Query: 9 RKRRPTRGPDATARSQALELLRSR------RSNGPRSTTTPQIRLENPIYDTIPEDEYTA 62
R R+P R P + ARSQ L LLR R R++ + +P L P+ IP +
Sbjct: 312 RLRQPRRQPPSPARSQRLRLLRLRLPRPLHRAHMVPRSPSP*RSLALPLRPLIPSFHHRR 491
Query: 63 LVASRP 68
A P
Sbjct: 492 RQAQTP 509
>AV779361
Length = 330
Score = 28.5 bits (62), Expect = 8.3
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 502 KSFCALLGA-RNSALELFLIKRKIKGPSWLQVSNFSTCSAS 541
+ FCA GA RNSALEL L+ G S + SN S +A+
Sbjct: 98 RKFCARTGAKRNSALELVLLLLNSSGVSLNRGSNTSKRNAA 220
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.337 0.147 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,531,026
Number of Sequences: 28460
Number of extensions: 384597
Number of successful extensions: 3578
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3557
length of query: 1510
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1408
effective length of database: 1,994,680
effective search space: 2808509440
effective search space used: 2808509440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144431.4