BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144430.8 - phase: 0 /pseudo
(91 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP076564 50 9e-08
AV411435 36 0.001
BP068806 36 0.001
AV428268 35 0.002
AV426428 35 0.002
TC10037 33 0.009
AV780445 32 0.015
TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partia... 31 0.043
TC19757 similar to UP|Q9LN36 (Q9LN36) F18O14.34, partial (14%) 28 0.36
BP081309 27 0.62
TC8228 similar to UP|GPX4_CITSI (Q06652) Probable phospholipid h... 27 0.80
TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3,... 26 1.0
TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%) 26 1.4
TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like... 25 1.8
TC14865 UP|Q93VA1 (Q93VA1) Selenium binding protein, complete 25 1.8
TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like pr... 25 2.3
BE122611 25 3.1
TC14332 similar to UP|SUCB_ARATH (O82662) Succinyl-CoA ligase [G... 25 3.1
TC19279 similar to PIR|A46259|A46259 recombination protein recA ... 25 3.1
TC20078 25 3.1
>BP076564
Length = 371
Score = 49.7 bits (117), Expect = 9e-08
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 3 HKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFDNINFFLEHNLGW-WIIIGL 61
H M+ T C RC++ +D+ HCL DC R +W + + FL + GW W++ +
Sbjct: 131 HACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWNRLGCSSFGGFLSSD-GWSWLLSIM 307
Query: 62 DRQLPHLFLSAVWLLWMARN 81
+ + +W +W RN
Sbjct: 308 KQPNVEKLIYILWWIWR*RN 367
>AV411435
Length = 426
Score = 36.2 bits (82), Expect = 0.001
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW 37
L +R M D C CN ED+ H LL C + R +W
Sbjct: 258 LKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW 365
>BP068806
Length = 418
Score = 35.8 bits (81), Expect = 0.001
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +3
Query: 15 RCNSTSEDVFHCLLDCAFPRNLWLAISFDNINFFLEHNLGWWI 57
RC ED++HCL DC R++W+ ++ F N W+
Sbjct: 255 RCQHQFEDIWHCLRDCRIARDVWVRLNALGWPGFFVSNAQAWV 383
>AV428268
Length = 429
Score = 35.0 bits (79), Expect = 0.002
Identities = 24/90 (26%), Positives = 41/90 (44%), Gaps = 10/90 (11%)
Frame = +3
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS----------FDNINFFLEH 51
L++RG+ ++VC C+ E H L C +W IS D+ FL+H
Sbjct: 159 LNRRGVVISNVCPLCSLDEESTDHLLFSCPIV*RIWSKISE*FGVFSVFPNDSHGHFLQH 338
Query: 52 NLGWWIIIGLDRQLPHLFLSAVWLLWMARN 81
LG + ++ ++++AV +W RN
Sbjct: 339 -LGSCGSLNFRKRGWFVWIAAVVCIWQGRN 425
>AV426428
Length = 413
Score = 35.0 bits (79), Expect = 0.002
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +3
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFDNINFFLEHNLGWWIIIGL 61
LH RG++ +C RC + + H +L C +W A S + F L +
Sbjct: 135 LHARGLAEDPICPRCLAAPKTADHAVLFCP*VHPIWFASS---LGFRLNQECKMHEFVAD 305
Query: 62 DRQLPH-----LFLSAVWLLWMARNRAC 84
Q+ FL+ ++ +W A+N C
Sbjct: 306 FMQVAD*DTCGEFLTILYAIWTAQNELC 389
>TC10037
Length = 560
Score = 33.1 bits (74), Expect = 0.009
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -3
Query: 3 HKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLA 39
+K + PT C RC+ E + H L DC R +W A
Sbjct: 417 NKGAVVPTIFCLRCDRLEETMDHALRDCP*ARRVWFA 307
>AV780445
Length = 504
Score = 32.3 bits (72), Expect = 0.015
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 15 RCNSTSEDVFHCLLDCAFPRNLWLAI 40
RC + ED+ HCL DC + +WL +
Sbjct: 65 RCPAPEEDI*HCLRDCPHSQEIWLRL 142
>TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partial (4%)
Length = 494
Score = 30.8 bits (68), Expect = 0.043
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 16 CNSTSEDVFHCLLDCAFPRNLWL 38
C+STSED+ H ++ AF NL+L
Sbjct: 34 CSSTSEDLIHAMVSSAFSANLFL 102
>TC19757 similar to UP|Q9LN36 (Q9LN36) F18O14.34, partial (14%)
Length = 484
Score = 27.7 bits (60), Expect = 0.36
Identities = 20/58 (34%), Positives = 25/58 (42%)
Frame = +2
Query: 25 HCLLDCAFPRNLWLAISFDNINFFLEHNLGWWIIIGLDRQLPHLFLSAVWLLWMARNR 82
HCL FP + S D FFL N G II + H F +WLLW + +
Sbjct: 167 HCL---PFPISNLEMTSRDITLFFLFQNHGG--IISIPHHTGHCFRLELWLLWRSSKK 325
>BP081309
Length = 420
Score = 26.9 bits (58), Expect = 0.62
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFDNINFFLEHNLG 54
LHK P + T ++TS VFH + + +W +S N N FL+ G
Sbjct: 273 LHKWAC-PNERSTHIHNTSISVFHLYGEDKWTLKIWGDVSHLNQNGFLQSGFG 118
>TC8228 similar to UP|GPX4_CITSI (Q06652) Probable phospholipid
hydroperoxide glutathione peroxidase (PHGPx)
(Salt-associated protein) , partial (95%)
Length = 883
Score = 26.6 bits (57), Expect = 0.80
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 24 FHCLLDCAFPRNLWLAISFDNINFFLEHNLG 54
FH +L A R+ W I+F+NI+FF+ LG
Sbjct: 655 FHQVLLNAQRRSCW-CITFNNISFFVNKELG 566
>TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3, complete
Length = 2481
Score = 26.2 bits (56), Expect = 1.0
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -3
Query: 16 CNSTSEDVFHCLLDCAFPRNLWLAISFDNINFFLEHNL 53
C++ + L CA +L FDN+NF LEH L
Sbjct: 1003 CHTRKKMCLETALLCASESHL----HFDNLNFLLEHTL 902
>TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%)
Length = 1448
Score = 25.8 bits (55), Expect = 1.4
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 32 FPRNLWLAISFDNINFFLEHNLGWWIII 59
F +LW+ +S +N +FF + + W+++I
Sbjct: 1346 FYLSLWVHLSHENFHFFC*YCVTWFMVI 1429
>TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(52%)
Length = 765
Score = 25.4 bits (54), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 38 LAISFDNINFFLEHNLGWWIIIGLD 62
LA F N+N + H L WWIII L+
Sbjct: 346 LATLFSNLNRGVSHLL-WWIIIRLN 275
>TC14865 UP|Q93VA1 (Q93VA1) Selenium binding protein, complete
Length = 1678
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +1
Query: 61 LDRQLPHLFLSAVWLLWMARNRACIAQEPST 91
L Q+P L +WLLWM + Q+ ST
Sbjct: 178 LSMQVPELKSQIIWLLWMWIQALQLTQK*ST 270
>TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like protein
(Fragment), partial (36%)
Length = 859
Score = 25.0 bits (53), Expect = 2.3
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +3
Query: 23 VFHCLLDCAFPRNLWLAISFDNINFFLEHNLGWWIIIGLDRQLPHL 68
VFH + C FP +L L + D L N +IG+D+ + HL
Sbjct: 447 VFHVNIVCQFPISLSLILVADKYIATLVPNTK--ELIGVDKSIAHL 578
>BE122611
Length = 357
Score = 24.6 bits (52), Expect = 3.1
Identities = 11/36 (30%), Positives = 17/36 (46%)
Frame = -2
Query: 7 MSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISF 42
++ + C RC + SED H C P + W+ F
Sbjct: 131 LASSAACIRCGAPSEDANHVFRWC--PGSAWMWTQF 30
>TC14332 similar to UP|SUCB_ARATH (O82662) Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (Succinyl-CoA
synthetase, beta chain) (SCS-beta) , complete
Length = 1773
Score = 24.6 bits (52), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 66 PHLFL-SAVWLLWMARNRAC 84
P+L + SA W WM R R+C
Sbjct: 253 PYLLINSAPWYSWMLRRRSC 194
>TC19279 similar to PIR|A46259|A46259 recombination protein recA homolog -
Arabidopsis thaliana (fragment)
{Arabidopsis thaliana;}, partial (9%)
Length = 743
Score = 24.6 bits (52), Expect = 3.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 39 AISFDNINFFLEHNLGW 55
AIS + FFL+HNL W
Sbjct: 249 AISHELEKFFLQHNLKW 299
>TC20078
Length = 473
Score = 24.6 bits (52), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 34 RNLWLAISFDNINFFLEHNLGWWIIIGL 61
R LW+ +SF +GWWI+I L
Sbjct: 93 RGLWVRLSF----------MGWWILIML 146
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.331 0.141 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,700,976
Number of Sequences: 28460
Number of extensions: 46923
Number of successful extensions: 314
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of query: 91
length of database: 4,897,600
effective HSP length: 67
effective length of query: 24
effective length of database: 2,990,780
effective search space: 71778720
effective search space used: 71778720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)
Medicago: description of AC144430.8