TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144430.7 + phase: 0 /pseudo
         (491 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19034                                                                28  2.6
TC18620 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partia...    27  7.6
AV409128                                                               27  9.9
TC8322 weakly similar to UP|ATP7_ARATH (Q9SJ12) Probable ATP syn...    27  9.9

>TC19034 
          Length = 843

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 26/81 (32%), Positives = 43/81 (52%), Gaps = 13/81 (16%)
 Frame = +2

Query: 227 REEVKQTGLIMQNP---NLRTKLNLLKEEVLEK--IRTKRG--------ILTRVKFSAII 273
           +E+ +Q+  +++NP   +LR K  ++      +  IRTK+         + TR  F  II
Sbjct: 575 QEQ*RQSLKLLRNPWLPSLRPKRTMVFRRFARRR*IRTKKKWTMLKVLMMQTRNIFQTII 754

Query: 274 VKNLAILLMNVGSRKIRRLKK 294
            + + +LL N   RKIRRL+K
Sbjct: 755 ARRMELLL-NCLRRKIRRLRK 814


>TC18620 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (24%)
          Length = 695

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 12/38 (31%), Positives = 23/38 (59%)
 Frame = -3

Query: 257 IRTKRGILTRVKFSAIIVKNLAILLMNVGSRKIRRLKK 294
           +RTK    + +  +  I+  LA++ + +G++KIR  KK
Sbjct: 618 LRTKSSTRSTIWLNCYIMGRLAVVYIELGAQKIRPAKK 505


>AV409128 
          Length = 324

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +1

Query: 398 WRKDSQFQWKVI-----H*NCLIQRRIWC*NLLCQKIEPID 433
           WR+     W+V+          + R +WC* +LCQ+   +D
Sbjct: 64  WRRRKGAWWRVLTEGVRRFTLPVGRAVWC*KMLCQEHRLLD 186


>TC8322 weakly similar to UP|ATP7_ARATH (Q9SJ12) Probable ATP synthase 24
           kDa subunit, mitochondrial precursor  , partial (94%)
          Length = 1089

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 240 PNLRTKLNLLKEEVLEKIRTKRGILTRVKFSAIIVKNLAILLMNVGSRKIRRLKKPIL 297
           P+ RT L  LKE     IRTK+G+L  +   A+++  L         +  + LKKP+L
Sbjct: 415 PDARTYLLTLKE-----IRTKKGLLDDLGAEAMMIDAL--------DKVEKELKKPLL 549


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.371    0.167    0.604 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,630,160
Number of Sequences: 28460
Number of extensions: 92088
Number of successful extensions: 1324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 795
length of query: 491
length of database: 4,897,600
effective HSP length: 94
effective length of query: 397
effective length of database: 2,222,360
effective search space: 882276920
effective search space used: 882276920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 57 (26.6 bits)