TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144430.5 - phase: 0 /pseudo
         (125 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP084465                                                               28  0.45
TC10676 homologue to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein, p...    28  0.59
TC9380                                                                 27  0.77
TC12492 weakly similar to UP|AAS53933 (AAS53933) AFR562Cp, parti...    27  1.0
AV409132                                                               25  3.8
BP028697                                                               25  3.8
TC18066                                                                25  5.0
TC8609                                                                 25  5.0
TC9155 homologue to UP|Q949G5 (Q949G5) Mob1-like protein, complete     25  5.0
TC9688                                                                 24  6.6
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras...    24  6.6
TC12646                                                                24  6.6
BP043003                                                               24  8.6
AV776172                                                               24  8.6
TC10324 similar to UP|O82469 (O82469) Protein phosphatase-2C , p...    24  8.6

>BP084465 
          Length = 296

 Score = 28.1 bits (61), Expect = 0.45
 Identities = 14/59 (23%), Positives = 25/59 (41%)
 Frame = +2

Query: 3   KMEQRRQDPPTAANRRRPLWRPMSTQNAATGGDNSAKAVVAEQISQTVQSTSNLLHLMQ 61
           K++   Q PP + + + P W P +T N  + G +  K     Q    +   + + H  Q
Sbjct: 119 KLKANGQPPPLSGSTKNPGWLPENTSNKKSIGGHKKKQQFRHQNPHLLWDPAAISHRTQ 295


>TC10676 homologue to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein, partial (6%)
          Length = 612

 Score = 27.7 bits (60), Expect = 0.59
 Identities = 11/31 (35%), Positives = 15/31 (47%)
 Frame = +3

Query: 9   QDPPTAANRRRPLWRPMSTQNAATGGDNSAK 39
           ++  T+  RRR  W P    N   GGD+  K
Sbjct: 300 EEETTSRRRRRSRWDPQPDSNEQAGGDSGPK 392


>TC9380 
          Length = 487

 Score = 27.3 bits (59), Expect = 0.77
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 60  MQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVLEQLPRVISSLDAHMEN 107
           +QH +P Q  + K+    ++ + + KNT   +E  P +   +  H +N
Sbjct: 411 IQHETPIQLNIHKIRNTCISCIGSRKNTA*YIENHPHLAHQVLIHHQN 268


>TC12492 weakly similar to UP|AAS53933 (AAS53933) AFR562Cp, partial (7%)
          Length = 922

 Score = 26.9 bits (58), Expect = 1.0
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 35  DNSAKAVVAEQ--ISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLL 78
           +N+   ++A++  + +T+Q+ S + HLM++       L+  PK +L
Sbjct: 706 NNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPHLIVAPKAVL 843


>AV409132 
          Length = 405

 Score = 25.0 bits (53), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 1   MKKMEQRRQDPPTAANRRRPLWRPMS 26
           M++M  R+    TAA  RR +WRP S
Sbjct: 188 MRRM--RKMKATTAARMRRRIWRPSS 117


>BP028697 
          Length = 377

 Score = 25.0 bits (53), Expect = 3.8
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +1

Query: 18  RRPLWRPMSTQNAATGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNL 77
           R+PL    S +    GGD +    V     Q + +  N   L+   SP    L    +  
Sbjct: 79  RQPLAAGKSDRGEGGGGDTTTTTSVMNDTDQCICNDENAKTLVLGGSPL-FSLETQKRRK 255

Query: 78  LAKVSTVKNT 87
              V T+KNT
Sbjct: 256 FPMVKTLKNT 285


>TC18066 
          Length = 480

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 10  DPPTAANRRRPLWRPMSTQNAATGGDNSAKAVVAEQISQTVQSTSNLLHL 59
           +PP +A+RRR L  P S  N   G  +S   V  E ++++      LL L
Sbjct: 85  NPPLSASRRRCLSPPSSVIN---GSASSTLTVQVEHVTRSQFLKYRLLEL 225


>TC8609 
          Length = 980

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 52  STSNLLHLMQHSSPAQAKLVKLPKNLL 78
           S++ L+   QHSS   AK  K P N L
Sbjct: 374 SSNQLMQEQQHSSKRAAKYEKKPSNTL 294


>TC9155 homologue to UP|Q949G5 (Q949G5) Mob1-like protein, complete
          Length = 1087

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = -1

Query: 72  KLPKNLLAKVSTVKNTQQVLEQLPRVIS 99
           KL  +L   +S   NTQ  LEQ+P ++S
Sbjct: 610 KLFHHLAEILSNPSNTQHTLEQIPLLVS 527


>TC9688 
          Length = 715

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
 Frame = +1

Query: 35  DNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAK-------------- 80
           D   +A   E ++  ++  S L +L   S   +    + P+N +AK              
Sbjct: 163 DKINQARSEEDLNSCLEMKSQLFNLEVDSGSIEILDHETPENEIAKSESTSAEELDYSSP 342

Query: 81  --VSTVKNTQQVLEQLPRVISSLDAHME 106
             V T +  Q  L  + R +SSL+ H+E
Sbjct: 343 KLVVTAEVDQDTLNTVDRYLSSLEQHVE 426


>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
           precursor  , partial (81%)
          Length = 1355

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 4   MEQRRQDPPTAANRRRPLWRP 24
           +  RRQ PP + +RRR   RP
Sbjct: 606 LRPRRQSPPRSRHRRRRRGRP 668


>TC12646 
          Length = 401

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 6   QRRQDPPTAANRRRPLWRP 24
           Q +++P T+++ RRP W P
Sbjct: 397 QMKRNPSTSSSSRRPSWIP 341


>BP043003 
          Length = 493

 Score = 23.9 bits (50), Expect = 8.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 11  PPTAANRRRPLW 22
           PP AA RR PLW
Sbjct: 357 PPLAAVRRHPLW 322


>AV776172 
          Length = 433

 Score = 23.9 bits (50), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 18  RRPLWRPMSTQNAATG 33
           RRP+W  + T+ +ATG
Sbjct: 118 RRPMWSGIGTRRSATG 165


>TC10324 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial (5%)
          Length = 510

 Score = 23.9 bits (50), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = -1

Query: 48  QTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLA 79
           +T+Q T    HL +   P+  +L  +P  LLA
Sbjct: 420 KTIQITQKAPHLNRSKPPSPHQLSSIPTKLLA 325


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.311    0.122    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,602,790
Number of Sequences: 28460
Number of extensions: 15417
Number of successful extensions: 108
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of query: 125
length of database: 4,897,600
effective HSP length: 80
effective length of query: 45
effective length of database: 2,620,800
effective search space: 117936000
effective search space used: 117936000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)