BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.8 + phase: 0 /pseudo
(106 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16467 UP|NUCC_LOTJA (Q9BBN8) NAD(P)H-quinone oxidoreductase ch... 49 2e-07
TC16884 weakly similar to UP|Q9FI58 (Q9FI58) Genomic DNA, chromo... 27 0.53
TC15606 weakly similar to GB|AAL15406.1|16323302|AY058232 At2g02... 25 2.6
TC8782 weakly similar to GB|AAM66046.1|21594813|AY088511 amyloge... 25 2.6
TC11554 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragmen... 25 2.6
TC11548 similar to UP|Q9FG37 (Q9FG37) Gamma-tubulin interacting ... 24 3.4
TC17339 24 3.4
BP041076 23 5.8
TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase , co... 23 5.8
TC7830 UP|Q8H946 (Q8H946) Phosphoenolpyruvate carboxylase , com... 23 5.8
TC11770 similar to UP|Q8GRK2 (Q8GRK2) Somatic embryogenesis rece... 23 7.6
AV771137 23 9.9
TC17308 weakly similar to UP|Q9LQV9 (Q9LQV9) F10B6.11, partial (... 23 9.9
>TC16467 UP|NUCC_LOTJA (Q9BBN8) NAD(P)H-quinone oxidoreductase chain H,
chloroplast (NAD(P)H dehydrogenase, chain H)
(NADH-plastoquinone oxidoreductase 49 kDa subunit) ,
complete
Length = 2407
Score = 48.5 bits (114), Expect = 2e-07
Identities = 23/34 (67%), Positives = 25/34 (72%)
Frame = +3
Query: 17 VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
V+F IS LAE R PFDLPEAE E VAGY EY+
Sbjct: 1902 VVFLISSLAECERLPFDLPEAEEELVAGYQTEYS 2003
>TC16884 weakly similar to UP|Q9FI58 (Q9FI58) Genomic DNA, chromosome 5, TAC
clone:K3K7, partial (24%)
Length = 682
Score = 26.9 bits (58), Expect = 0.53
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 50 ARDAILNSPLLAEANVPGSRGLILTETRGACWG 82
A A ++ L E +VPGS+ L+ + RG WG
Sbjct: 331 AAGACVHMQKLVEMDVPGSKKLLESLGRGKIWG 429
>TC15606 weakly similar to GB|AAL15406.1|16323302|AY058232
At2g02710/T20F6.15 {Arabidopsis thaliana;}, partial
(25%)
Length = 642
Score = 24.6 bits (52), Expect = 2.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 56 NSPLLAEANVPGSRGLILTETRGAC 80
+SP A + PGSRG+ L G C
Sbjct: 380 SSPASASSR*PGSRGMRLLAEAGGC 454
>TC8782 weakly similar to GB|AAM66046.1|21594813|AY088511 amylogenin
{Arabidopsis thaliana;}, partial (31%)
Length = 727
Score = 24.6 bits (52), Expect = 2.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 71 LILTETRGACWGTLHSSFETNECRVGGFCL 100
L+ T W SSF + CR G+CL
Sbjct: 326 LLETPELWLAWSGFVSSFHEDSCRREGYCL 415
>TC11554 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(52%)
Length = 425
Score = 24.6 bits (52), Expect = 2.6
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = -3
Query: 53 AILNSPLLAEANVPGSRGLILTETRGACWGTLHSSFETNECRVGGFCLVIK 103
A + S L + PGS G I T++ G + + + R+GGF L ++
Sbjct: 174 ASIRSILATYDDFPGSEGRISTQSPGLTVLLMCLTVNESRVRLGGFGLAME 22
>TC11548 similar to UP|Q9FG37 (Q9FG37) Gamma-tubulin interacting
protein-like, partial (6%)
Length = 480
Score = 24.3 bits (51), Expect = 3.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 65 VPGSRGLILTETRGACWG 82
+PGS GL++ RG C G
Sbjct: 113 IPGS*GLVVVSRRGDCGG 60
>TC17339
Length = 637
Score = 24.3 bits (51), Expect = 3.4
Identities = 14/53 (26%), Positives = 25/53 (46%)
Frame = -3
Query: 18 MFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRG 70
+FFI L + + FD+P E ++ G + A+++ + E V RG
Sbjct: 281 LFFIKALVSSPDSQFDVPSTEGQAQNGTFM-----AVMHQEYIMEQQVHRPRG 138
>BP041076
Length = 481
Score = 23.5 bits (49), Expect = 5.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 36 EAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGACWGTLH 85
+ AE+ ++ RDA P L + + S+G+ ETR W T H
Sbjct: 317 DGNAETPNALSLSCGRDA---DPNLKQL*IDMSKGIRGMETRFMLWSTQH 177
>TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase , complete
Length = 3367
Score = 23.5 bits (49), Expect = 5.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 6 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAG 44
IW G+P F V + + R P++ P + S G
Sbjct: 866 IWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMG 982
>TC7830 UP|Q8H946 (Q8H946) Phosphoenolpyruvate carboxylase , complete
Length = 3376
Score = 23.5 bits (49), Expect = 5.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 6 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAG 44
IW G+P F V + + R P++ P + S G
Sbjct: 836 IWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMG 952
>TC11770 similar to UP|Q8GRK2 (Q8GRK2) Somatic embryogenesis receptor kinase
1, partial (10%)
Length = 464
Score = 23.1 bits (48), Expect = 7.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 13 FPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVE 48
FP+LV +IS L+ + A + +++ YNV+
Sbjct: 276 FPLLVSGYISLLSLKSTAVYSFKFVHRGALSSYNVQ 383
>AV771137
Length = 551
Score = 22.7 bits (47), Expect = 9.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 78 GACWGTLHSSFETNEC 93
G CW TL F +EC
Sbjct: 85 GECWSTLSRHFLFHEC 132
>TC17308 weakly similar to UP|Q9LQV9 (Q9LQV9) F10B6.11, partial (21%)
Length = 587
Score = 22.7 bits (47), Expect = 9.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 81 WGTLHSSFETNECRVGGFCL 100
WG S + +ECR+ F L
Sbjct: 18 WGKYDRSLQRDECRIYSFLL 77
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,858,482
Number of Sequences: 28460
Number of extensions: 19391
Number of successful extensions: 103
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of query: 106
length of database: 4,897,600
effective HSP length: 82
effective length of query: 24
effective length of database: 2,563,880
effective search space: 61533120
effective search space used: 61533120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)
Medicago: description of AC144406.8