TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144406.5 - phase: 0 
         (47 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding...    28  0.51
TC10792                                                                27  1.1
TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported]...    26  1.9
BP043373                                                               25  2.5
BU494350                                                               24  7.4
BP062602                                                               23  9.7

>TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein
           CP29.3, chloroplast precursor (LHCII protein 4.3)
           (LHCB4.3), partial (80%)
          Length = 1155

 Score = 27.7 bits (60), Expect = 0.51
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 5   SRCPGRTRLLLTLEDHWKRPGTRACRER-STPG 36
           SR P RT    ++  HW +P  R CR R S+PG
Sbjct: 522 SRKPPRTAETASVGLHWSQPWFR*CRRRDSSPG 424


>TC10792 
          Length = 480

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 20  HWKRPGTRACRERSTPGGRASTVSPG 45
           H K+P  R C+E+ +PG   +   PG
Sbjct: 216 HQKQPTQRPCKEKRSPGTTQTLGKPG 139


>TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (42%)
          Length = 1095

 Score = 25.8 bits (55), Expect = 1.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 5   SRCPGRTRLLLTLEDHWKRPGTRACRERSTPGGRAS 40
           SRCP         E  W+R   R     STP  R++
Sbjct: 447 SRCPNSPTQTAARESGWRRRSARFAWRSSTPATRSA 554


>BP043373 
          Length = 460

 Score = 25.4 bits (54), Expect = 2.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 2   GGRSRCPGRTRLLLTLEDHWKRPGTRACRER 32
           GGR       +L+L +ED W+R   R  R++
Sbjct: 188 GGRRHNTQVLKLMLKIEDEWQRSRRRCRRQK 280


>BU494350 
          Length = 537

 Score = 23.9 bits (50), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 21  WKRPGTRACRERSTP 35
           W RPGT+  RER +P
Sbjct: 124 WFRPGTKYYRERLSP 168


>BP062602 
          Length = 536

 Score = 23.5 bits (49), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  DHWKRPGTRACRERSTP 35
           +HWK  G+R  ++ +TP
Sbjct: 427 NHWKESGSRTTKKLATP 477


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,044,317
Number of Sequences: 28460
Number of extensions: 11406
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of query: 47
length of database: 4,897,600
effective HSP length: 23
effective length of query: 24
effective length of database: 4,243,020
effective search space: 101832480
effective search space used: 101832480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)