BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.4 - phase: 1 /pseudo
(322 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10390 similar to UP|Q9LHJ7 (Q9LHJ7) RING zinc finger protein-l... 39 0.001
TC19857 weakly similar to UP|RBS_LARLA (P16031) Ribulose bisphos... 28 1.6
TC17030 similar to UP|Q8S995 (Q8S995) Glucosyltransferase-14, pa... 28 2.1
TC15399 homologue to UP|Q39828 (Q39828) SDL5A, partial (28%) 28 2.7
AV413583 27 3.6
TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-r... 27 3.6
TC10607 27 3.6
TC17365 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (19%) 27 3.6
TC11488 homologue to UP|Q84W07 (Q84W07) At1g18890, partial (18%) 27 3.6
TC10986 similar to GB|AAL56097.1|18028661|AF334030 ORF91 {Helico... 27 4.6
AV780444 27 4.6
AV420698 27 6.1
TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), p... 27 6.1
TC17046 weakly similar to UP|Q7XXP0 (Q7XXP0) Hydroxyanthranilate... 27 6.1
TC10114 similar to UP|Q9LYV6 (Q9LYV6) ABA-responsive protein-lik... 27 6.1
>TC10390 similar to UP|Q9LHJ7 (Q9LHJ7) RING zinc finger protein-like,
partial (44%)
Length = 722
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = -1
Query: 64 HFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVR 123
HFP + + L R RRL + +S G +G+ A G IG L S K+ EER E+
Sbjct: 197 HFPAKPAVTLSLISRSRRLNQNRESEAGDLRGKRMA--SRG*IGKLEESGKR*EERVEID 24
Query: 124 GRRA 127
GRR+
Sbjct: 23 GRRS 12
>TC19857 weakly similar to UP|RBS_LARLA (P16031) Ribulose bisphosphate
carboxylase small chain, chloroplast precursor (RuBisCO
small subunit) , partial (65%)
Length = 501
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 1/35 (2%)
Frame = +2
Query: 84 RRDKSR-PGKEKGRWWAFGKVGPIGCLHSSNKKDE 117
RR+ SR PG GR+W K+ GC SS +E
Sbjct: 308 RRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLNE 412
>TC17030 similar to UP|Q8S995 (Q8S995) Glucosyltransferase-14, partial (51%)
Length = 1098
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +1
Query: 255 HFVAPGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSE 295
+FV PGV + M G S + ++RIAF+ E++ +E
Sbjct: 697 YFVLPGVPDKIEMTKAQIPGPSGARMDQNRIAFYAETAAAE 819
>TC15399 homologue to UP|Q39828 (Q39828) SDL5A, partial (28%)
Length = 801
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 245 MHFD--PVVVLNHFVAPGVAEPSTMGGTNA 272
+HFD PV +L H+V P + +P ++ TNA
Sbjct: 480 VHFDITPVSLLGHYVVP*LQDPHSVMRTNA 391
>AV413583
Length = 429
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 77 RRPRRLKRRDKSRPGKEKGRWW 98
+RPR RRD R GK + WW
Sbjct: 99 KRPRDESRRDGRRRGKRRR*WW 34
Score = 26.2 bits (56), Expect = 7.9
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -3
Query: 81 RLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDRE 140
RLK R + K++ RWW P C RNE G + R ++ E
Sbjct: 220 RLKGRRGPKEKKKRRRWW------PEKC----------RNEKEESDGGGEDDK*REEETE 89
Query: 141 KQNEIRIWPKKKQR 154
++ R WP+K+++
Sbjct: 88 RREPQR-WPEKRKK 50
>TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol
4-reductase-like (Cinnamoyl-CoA reductase-like protein),
partial (21%)
Length = 479
Score = 27.3 bits (59), Expect = 3.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 77 RRPRRLKRRDKSRPGKEKGRWWAF 100
RRPRR RR R + RWW F
Sbjct: 400 RRPRRRGRRGSLRRSRVVLRWWRF 471
>TC10607
Length = 411
Score = 27.3 bits (59), Expect = 3.6
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = -3
Query: 77 RRPRRLKRRDKSRPGKEKGRWW 98
R+ R+ R +K + K+KG+WW
Sbjct: 82 RKEDRVIREEKKKKKKKKGKWW 17
>TC17365 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (19%)
Length = 364
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -1
Query: 76 PRRPRRLKR---RDKSRPGKEKGRW 97
PRRPRR R R+ SR G+ G W
Sbjct: 196 PRRPRRSARMGGREPSRRGRRSGAW 122
>TC11488 homologue to UP|Q84W07 (Q84W07) At1g18890, partial (18%)
Length = 670
Score = 27.3 bits (59), Expect = 3.6
Identities = 37/146 (25%), Positives = 57/146 (38%), Gaps = 9/146 (6%)
Frame = +3
Query: 12 RSGYSHGGVTIDSIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRL---------GRCIL 62
R G HG V ++YG + R G + P R G GR +
Sbjct: 156 RRGRVHGRVCTCR*FWYGGSSESRPSGRGS-GPLTGPVRQRVGLVFCGLAPFSGSGRLVW 332
Query: 63 IHFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEV 122
+ +R + ++ R PR+L R S P W F +HS +++ ER+
Sbjct: 333 WWWLRRLWWWWWCFRPPRQLYRTRCSFP*------WVFSSTEGSSSIHSIKERERERDRE 494
Query: 123 RGRRAGKRVESIRLDDREKQNEIRIW 148
R R E + + REK+ E R+W
Sbjct: 495 RER------ERVLVFVREKK*E-RVW 551
>TC10986 similar to GB|AAL56097.1|18028661|AF334030 ORF91 {Helicoverpa zea
single nucleocapsid nucleopolyhedrovirus;}, partial
(15%)
Length = 655
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 61 ILIHFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRW 97
IL+H R H +PR+ KR + G+EK +W
Sbjct: 287 ILVHRSCRARKHGKTYHKPRKQKREENPIFGREKAKW 177
>AV780444
Length = 515
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/37 (37%), Positives = 23/37 (61%), Gaps = 2/37 (5%)
Frame = -2
Query: 284 RIAFFVESSTSEKK--CLAEAKKVAIPSVVCKPPLHP 318
++AFF++ + S+ + EAK +A PS C PL+P
Sbjct: 502 KLAFFLQPTESQYQHDLSQEAKGLAFPSCDCT*PLYP 392
>AV420698
Length = 250
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 158 HDRSPSIKKNLSKSL-RVSGAHPKYAGAVND 187
+ +SP++K+N+SKS R++G K G +D
Sbjct: 51 YSQSPALKRNISKSCGRINGNQEKCGGTRSD 143
>TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), partial (7%)
Length = 528
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +3
Query: 112 SNKKDEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKS 171
S KK +++N+ + + K +L++ + QN KKK++ HD +K
Sbjct: 129 SEKKKKKKNKDKHQNGEKTSPKRKLEELDNQNGTESEKKKKKKKEKHDNKSEENAEETKE 308
Query: 172 LRVSG 176
+G
Sbjct: 309 ANGNG 323
>TC17046 weakly similar to UP|Q7XXP0 (Q7XXP0) Hydroxyanthranilate
hydroxycinnamoyltransferase 4 (Fragment), partial (10%)
Length = 548
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -1
Query: 138 DREKQNEIRIWPKKKQRYGYHDRSPSIKKNL 168
+R +Q I IW +KKQR P +NL
Sbjct: 212 NRNEQRSISIWTRKKQRISIRVMRPWTHENL 120
>TC10114 similar to UP|Q9LYV6 (Q9LYV6) ABA-responsive protein-like, partial
(35%)
Length = 633
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 253 LNHFVAPGVAEPST 266
++HFV PGVA PST
Sbjct: 304 ISHFVVPGVAAPST 345
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,111,704
Number of Sequences: 28460
Number of extensions: 88655
Number of successful extensions: 525
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of query: 322
length of database: 4,897,600
effective HSP length: 90
effective length of query: 232
effective length of database: 2,336,200
effective search space: 541998400
effective search space used: 541998400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144406.4