TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144404.22 + phase: 0 
         (471 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8184 similar to UP|Q9LJQ4 (Q9LJQ4) Muconate cycloisomerase-lik...    30  1.1
TC18509 weakly similar to UP|Q9LFY7 (Q9LFY7) T7N9.4, partial (8%)      29  1.9
BP058959                                                               28  2.5
TC10221                                                                28  3.2
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete          27  7.2
BF177754                                                               27  9.4

>TC8184 similar to UP|Q9LJQ4 (Q9LJQ4) Muconate cycloisomerase-like protein,
           partial (17%)
          Length = 683

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 208 CCAQLLYRWITSLLPRTPHFTTNPENLLWSKRLMSL 243
           CC+++LY W+  LLP  P   T P  +   K L ++
Sbjct: 449 CCSRILYLWLLLLLP--PANVTTPHLIFMQKALCTI 348


>TC18509 weakly similar to UP|Q9LFY7 (Q9LFY7) T7N9.4, partial (8%)
          Length = 688

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 5/35 (14%)
 Frame = +2

Query: 15  LSLRKLGKKVLCTDDF-----FEQHGNLLGVVKTD 44
           L LRK+GK VL TDD      F+ +GN++  +  D
Sbjct: 497 LLLRKMGKIVLQTDDIQMEIVFKSYGNIISQISKD 601


>BP058959 
          Length = 435

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 217 ITSLLPRTPHFTTNPENLLWS 237
           ++ LLP  PHF  N E L WS
Sbjct: 246 LSHLLPHLPHFVENNEKLQWS 184


>TC10221 
          Length = 1398

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 110 LETDEVKTHLITRGKFLGFSTDFLYERTTF-FDKMGVAYAFNSILALLVYGLVLFPSLDN 168
           +E  +++THL+ RG +L F  +      TF F  +  A    SI+ ++V  +V FP L  
Sbjct: 241 IEEGQLETHLLLRG-YLRFPENE*ESTPTFSFQPLLPAPPPLSIVVVVVAVVVSFPDLSV 65

Query: 169 FVDIKAIQIFLSKNPVPT 186
           F     I     K+PV T
Sbjct: 64  FASRDKIDPSTVKSPVLT 11


>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
          Length = 1064

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 358 IRMPYKISRFVSAITPAPPLPMTFDTEKEC 387
           IR+P++I+       P PPLP   + +  C
Sbjct: 77  IRIPHRIAPPFDETLPPPPLPAAIEDDNRC 166


>BF177754 
          Length = 416

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 428 QEKEENIRLRAALQKKEDFLDKV 450
           Q K+  I++++ LQ  +DFLDKV
Sbjct: 193 QGKQIGIKIKSVLQMTKDFLDKV 261


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,276,362
Number of Sequences: 28460
Number of extensions: 117174
Number of successful extensions: 548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of query: 471
length of database: 4,897,600
effective HSP length: 94
effective length of query: 377
effective length of database: 2,222,360
effective search space: 837829720
effective search space used: 837829720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)