BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144389.3 - phase: 0
(488 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12869 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-co... 132 2e-31
TC19301 58 3e-09
BP072991 55 3e-08
CN825170 51 4e-07
TC13416 weakly similar to GB|AAP21292.1|30102748|BT006484 At1g67... 33 0.080
BP057633 33 0.10
TC19015 homologue to UP|Q94EH1 (Q94EH1) At2g20120/T2G17.8, parti... 32 0.18
AV408509 30 0.89
TC12689 similar to UP|BAD11341 (BAD11341) BRI1-KD interacting pr... 30 1.2
TC18556 similar to UP|Q9XIN0 (Q9XIN0) At2g27230 protein (BHLH tr... 29 1.5
TC16328 28 4.4
TC15381 similar to UP|Q9ZST9 (Q9ZST9) Tic22, partial (96%) 27 5.7
BP057638 27 9.8
>TC12869 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-containing
protein (Fragment), partial (6%)
Length = 503
Score = 132 bits (331), Expect = 2e-31
Identities = 72/157 (45%), Positives = 103/157 (64%), Gaps = 1/157 (0%)
Frame = +2
Query: 1 MIMVKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLE 60
++M + L+E+ TD+NK L G L PLL+L+ +ND+E+K VA+KAL LS+L +NGL
Sbjct: 32 IVMAETLSEIPLTDQNKLSLVKDGALQPLLQLLVNNDLEIKNVAVKALLQLSSLPENGLH 211
Query: 61 MIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQT-PVSLLESDEDVFN 119
M+++G A+ L +L+ HS S++L E V IM LA ST Q+ VS L SDED F
Sbjct: 212 MLKEGVAQPLLELLYHHSFQSTTLLEQVVATIMHLAISTTHQEAVAGQVSFLASDEDTFK 391
Query: 120 LFSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLR 156
FSL+S T P+++ I++ F +LC S S IRN+LR
Sbjct: 392 FFSLISLTEPEIQNKILKAFQALCQSFSGFSIRNRLR 502
>TC19301
Length = 395
Score = 58.2 bits (139), Expect = 3e-09
Identities = 40/131 (30%), Positives = 62/131 (46%)
Frame = +3
Query: 308 QTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHGGVCIVESSFCLLEAD 367
Q K AA + S S+ L+ + K G W + C H +C V ++FCLLEAD
Sbjct: 6 QAKARAAAFIGDLSMSTPNLTV-VSKSPGCWFLRSSRVPLCSAHDSLCSVITTFCLLEAD 182
Query: 368 AVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPSPGL 427
A+ L K L ++ L TL+ E Q G+ VL + N + ++ L S L
Sbjct: 183 ALPGLIKLLHGEVHATAYEAIQTLSTLVLEECPQRGAHVLHEANAMRPLLDILNWGSDSL 362
Query: 428 QEKSLNALERI 438
+ ++L LE++
Sbjct: 363 KAEALGLLEKV 395
>BP072991
Length = 411
Score = 54.7 bits (130), Expect = 3e-08
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = -2
Query: 431 SLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARILAHLNVLHDQSSYF 488
S LERIF E K Y + A MPLVD+TQ + ++SLAA+ LA L VL QSSYF
Sbjct: 410 SSGGLERIFLPDEVKNNYKSLATMPLVDITQSKDSRLRSLAAKGLAQLGVLDKQSSYF 237
>CN825170
Length = 539
Score = 51.2 bits (121), Expect = 4e-07
Identities = 43/180 (23%), Positives = 81/180 (44%), Gaps = 3/180 (1%)
Frame = +2
Query: 111 LESDEDVFNLFSLV--SYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLF 168
LE D NL SL S + +R+ ++ +C S ++ + V ++ L
Sbjct: 17 LELDSFFTNLLSLQQSSSSGHSLRKPTLRALLGIC-KVETSLVKKAILAANGVSQILPLL 193
Query: 169 ENESLSLRASAVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIR 228
++ +R +A+ L + E + + +E L+ +L + + ++A G++
Sbjct: 194 DDSDSEIRETAINLLFLFSQHVPEGVVEYLFKPRRLEALIVLLDNEDNDNVQMAAAGLLA 373
Query: 229 YLPKVQ-QITQWLYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQK 287
LPK + ++T L G L I ++ G K + EN+ AL RFT PT++E Q+
Sbjct: 374 NLPKSERELTMKLIKMGGLDAIISILKTG------KMEAKENALSALFRFTDPTDIESQR 535
>TC13416 weakly similar to GB|AAP21292.1|30102748|BT006484 At1g67530
{Arabidopsis thaliana;}, partial (23%)
Length = 557
Score = 33.5 bits (75), Expect = 0.080
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 3/53 (5%)
Frame = +2
Query: 201 QKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYD---AGALSIIC 250
+KCI L+ + S + +EE+VSA G+I L + I + + A L I+C
Sbjct: 386 EKCIAVLINLATSQAGREEMVSAPGLISALASILDIGELIVQEQAASCLLILC 544
>BP057633
Length = 570
Score = 33.1 bits (74), Expect = 0.10
Identities = 32/118 (27%), Positives = 52/118 (43%), Gaps = 5/118 (4%)
Frame = -2
Query: 365 EADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPS 424
+A AV L + + +D G+ + ++ L L + G +A E IPL++ + S
Sbjct: 569 QAGAVKFLVQLMNTAD-GMVDKAVALLSNL---STITEGRSEIAREGGIPLLVEIIES-- 408
Query: 425 PGLQEKSLNALERIFRLLEFKQKYGA-----SAQMPLVDLTQRGNGSIKSLAARILAH 477
G Q NA + +L K+ A PLV L+Q G K A ++L+H
Sbjct: 407 -GSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSH 237
>TC19015 homologue to UP|Q94EH1 (Q94EH1) At2g20120/T2G17.8, partial (25%)
Length = 414
Score = 32.3 bits (72), Expect = 0.18
Identities = 13/42 (30%), Positives = 24/42 (56%)
Frame = -3
Query: 301 LLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSA 342
+L +G ++ L+ L++T + ++SSP+P G W F A
Sbjct: 169 VLATGMRSSRSLSLLAITAEEEEEEDISSPIPAHDGVWKFPA 44
>AV408509
Length = 428
Score = 30.0 bits (66), Expect = 0.89
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 132 RQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESC 190
+ I+Q FY+ CH PS ++ +K C ++ F N+S + +F C +C
Sbjct: 24 KSMIVQAFYTKCHQPSLCHLLSK-DSC*HPYDTMRSFYNKSAAYLPCKRNIFPCS*FTC 197
>TC12689 similar to UP|BAD11341 (BAD11341) BRI1-KD interacting protein 113
(Fragment), partial (9%)
Length = 734
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 28/56 (49%)
Frame = -3
Query: 50 NLSTLKKNGLEMIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQ 105
+L K GL + GAA+ F + + SLP + L + A L S++S DT+
Sbjct: 282 DLFASKPRGLTFL--GAAKVFFPLSWTSSLPLTFLEDSFASFTSSLEVSSVSMDTE 121
>TC18556 similar to UP|Q9XIN0 (Q9XIN0) At2g27230 protein (BHLH transcription
factor), partial (24%)
Length = 710
Score = 29.3 bits (64), Expect = 1.5
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 7/91 (7%)
Frame = +2
Query: 185 CLVES-CDEDAILKHVNQKCIETLLQMLKSSSDK------EEIVSAMGIIRYLPKVQQIT 237
CL+E+ C DA+L+ + + LQ + +DK +IVS G + +
Sbjct: 299 CLMEAKCSIDALLERTIKHML--FLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGA 472
Query: 238 QWLYDAGALSIICKYVQDGTDKDLQKSKLVE 268
W Y+ G+ S++C + + D + + LVE
Sbjct: 473 TWAYEVGSQSMVCPIIVE--DLNPPRQMLVE 559
>TC16328
Length = 482
Score = 27.7 bits (60), Expect = 4.4
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = -3
Query: 323 SSNELSSPMPKRKGFWCFSAQTEAGCLVHGG----VCIVESSFCLLEADAVGALAKTLGD 378
SS L +P K FWCF + + L H + IV S C D+ + +L
Sbjct: 219 SSKSLETPTRKSSCFWCFE-RRRSSKLFHPSYWRRISIVISVLCRSSVDSCRQVLNSLDG 43
Query: 379 SD 380
SD
Sbjct: 42 SD 37
>TC15381 similar to UP|Q9ZST9 (Q9ZST9) Tic22, partial (96%)
Length = 1170
Score = 27.3 bits (59), Expect = 5.7
Identities = 24/101 (23%), Positives = 39/101 (37%)
Frame = +3
Query: 76 QHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYI 135
+H+L ++ S HVA + A T+S V L SD D L+ + D ++
Sbjct: 138 KHALAATLTSHHVAKSLAGTAVYTVSNSNNEFV--LISDADAAKSIGLLCFRQEDAEAFL 311
Query: 136 IQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLR 176
Q +R R P L V + + E ++ R
Sbjct: 312 AQV------RSRKRELRGNARVVPITLDQVYMLKVEGIAFR 416
>BP057638
Length = 447
Score = 26.6 bits (57), Expect = 9.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 331 MPKRKGFWCFSAQTEAGCLVHGGVCI-VESSFC 362
+P+RKG WC CLV G+ I V FC
Sbjct: 261 VPRRKGTWCAERDLLEICLVFRGLVI*VN*YFC 163
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,632,242
Number of Sequences: 28460
Number of extensions: 99291
Number of successful extensions: 450
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of query: 488
length of database: 4,897,600
effective HSP length: 94
effective length of query: 394
effective length of database: 2,222,360
effective search space: 875609840
effective search space used: 875609840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144389.3