BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144375.6 - phase: 0
(1419 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP041532 113 2e-25
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 37 0.028
AV776568 35 0.063
AV419013 33 0.31
TC12726 similar to UP|BCCP_SOYBN (Q42783) Biotin carboxyl carrie... 32 0.70
AW719654 32 0.91
TC13459 30 2.0
TC11140 weakly similar to UP|Q9HD42 (Q9HD42) Charged multivesicu... 30 2.7
TC9726 weakly similar to UP|Q93Y18 (Q93Y18) SNF1 related protein... 30 2.7
TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 prote... 30 2.7
TC19679 similar to UP|Q9SSX8 (Q9SSX8) WIZZ, partial (23%) 30 2.7
TC18818 similar to UP|Q8LJ87 (Q8LJ87) Extensin-like protein, par... 30 3.5
TC16697 30 3.5
BE122436 29 4.5
TC7823 similar to UP|O24470 (O24470) Lipoxygenase , partial (96%) 29 4.5
TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial... 29 4.5
AV427333 29 5.9
TC10538 weakly similar to UP|Q8RW90 (Q8RW90) At1g12050/F12F1_8, ... 28 7.7
AW720491 28 7.7
>BP041532
Length = 455
Score = 113 bits (282), Expect = 2e-25
Identities = 58/76 (76%), Positives = 60/76 (78%)
Frame = -3
Query: 1340 DTRHVVLSTTCLGNKRCRLYSIPSSPCCHWFGSSF*RHLYQISKIYLQSVRQKPRRMQHC 1399
DT HVVLS TCLGNKRCRL+SIPSS CCH F SS RHLYQISKIY VR K RRM H
Sbjct: 453 DT*HVVLSRTCLGNKRCRLHSIPSSSCCHGFSSSISRHLYQISKIYWLCVR*KSRRM*HS 274
Query: 1400 C*YS*NVSFPDSENGC 1415
*YS*NVSF DSE+GC
Sbjct: 273 F*YS*NVSFSDSEDGC 226
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 36.6 bits (83), Expect = 0.028
Identities = 29/83 (34%), Positives = 45/83 (53%), Gaps = 6/83 (7%)
Frame = +2
Query: 519 SSQTPVPTHRSC----SSNDTSPLSKSNLKSFSSNDASPFSKSNLNNTNST--TKKLDLF 572
S TP P++ SC SS+ TSP K+++K S+ ASP + S L ++S+ +K +
Sbjct: 206 SPTTPTPSNPSCTSPSSSSTTSPSLKTSVKPSVSSPASPPTSSPLGPSSSSAPSKASSVT 385
Query: 573 RSQESKLTNLRKALSNQISPSKR 595
S S L N S+ +SP+ R
Sbjct: 386 ASSGSSLAN-----SSTLSPTGR 439
>AV776568
Length = 628
Score = 35.4 bits (80), Expect = 0.063
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 764 KYNPKEHACWRDGQPAPYLHLARTFSLLEDEKGK 797
+++P CW G+P P+L L F +++ E G+
Sbjct: 526 EFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGR 627
>AV419013
Length = 369
Score = 33.1 bits (74), Expect = 0.31
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 206 DVVKECDGENVLFLVATYVVGKEKILLEIARRCGKKVCVDGKKMEVLRALGYGESGEFTE 265
D+VK +V+ + + +GKE +L++IA KVCV +++ +R LG + FT
Sbjct: 3 DLVKSLPDHDVIIGINS--LGKEDLLVQIAMELNIKVCVWPERLRTMRILGLPD--VFTT 170
Query: 266 DRLESNVHVV 275
D + V V
Sbjct: 171 DTTITRVRAV 200
>TC12726 similar to UP|BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein
of acetyl-CoA carboxylase, chloroplast precursor (BCCP)
, partial (8%)
Length = 393
Score = 32.0 bits (71), Expect = 0.70
Identities = 26/67 (38%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Frame = -2
Query: 3 PKSKSQTLESLNSTQLYLNALQSLNLPPPTLPLPPLPSSTIPHSKLIPNT-RFLIDSFRH 61
P ++SQT++ + L+L Q LP LPLPP P+ + LIP T FL S +
Sbjct: 377 PHTQSQTVQFKSWLPLWL---QHHLLP---LPLPPPPNPPPIFASLIPPTPTFLSASLLN 216
Query: 62 TTPSSFT 68
TPS+F+
Sbjct: 215 PTPSAFS 195
>AW719654
Length = 491
Score = 31.6 bits (70), Expect = 0.91
Identities = 24/73 (32%), Positives = 32/73 (42%), Gaps = 13/73 (17%)
Frame = +3
Query: 28 LPPPTLPLPPLPSST----IPHSKLIP-----NTRFLIDSFR----HTTPSSFTYFLSHF 74
LPPP PLPPLP + +P +K +P N L FR H + + L F
Sbjct: 222 LPPPPPPLPPLPQTATPPPLPQTKTLPPFHFFNVPTLHPLFRSQKTHHSHCQSLFLLLSF 401
Query: 75 HSDHYSPLSSSWS 87
H+ S+S S
Sbjct: 402 HNPSSGSRSASGS 440
>TC13459
Length = 512
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = -1
Query: 555 SKSNLNNTNSTTKKLDLFRSQESKLTNLRKALSNQISPSKRKKGSESKSNKKVKVKAKS 613
SKS+ N N+ TK LF +TNL + L + S K+ +K N K ++ KS
Sbjct: 503 SKSSRLNLNTPTKARGLFTPAIFTITNLSRGLKPEPQSSPIKEAMANK*NIKSRLHKKS 327
>TC11140 weakly similar to UP|Q9HD42 (Q9HD42) Charged multivesicular body
protein 1/chromatin modifying protein 1 (Procollagen
(Type III) N-endopeptidase), partial (33%)
Length = 392
Score = 30.0 bits (66), Expect = 2.7
Identities = 20/65 (30%), Positives = 31/65 (46%)
Frame = +1
Query: 557 SNLNNTNSTTKKLDLFRSQESKLTNLRKALSNQISPSKRKKGSESKSNKKVKVKAKSESS 616
S +NN N +T+K +Q S + + L NQI K S + +K + + KSE
Sbjct: 19 SQINNPNPSTRKKKKESNQPSIMGGSAEKLMNQIMELKFTSKSLQRQARKCEKEEKSEKL 198
Query: 617 GSKQA 621
K+A
Sbjct: 199 KVKKA 213
>TC9726 weakly similar to UP|Q93Y18 (Q93Y18) SNF1 related protein kinase,
partial (6%)
Length = 641
Score = 30.0 bits (66), Expect = 2.7
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = -1
Query: 3 PKSKSQTLESLNSTQLYLNALQSLNLPPPTLPLPPLPSSTIPHSKLIPNTRFLIDSFRHT 62
P S S T + L+S+Q L S P P+ PLP PS T S P T F T
Sbjct: 371 PLSPSPT-QWLHSSQSQP*TLNSHQPPSPSPPLPQPPSPT*TSSLSSPTTPF------RT 213
Query: 63 TPSS 66
TPSS
Sbjct: 212 TPSS 201
>TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 protein, partial
(37%)
Length = 715
Score = 30.0 bits (66), Expect = 2.7
Identities = 21/54 (38%), Positives = 24/54 (43%), Gaps = 1/54 (1%)
Frame = -3
Query: 3 PKSKSQTLESLNSTQLYLNALQSLNLPP-PTLPLPPLPSSTIPHSKLIPNTRFL 55
P TL L S+Q L LPP PT PLP P T+P +P FL
Sbjct: 449 PTMPKFTLPPLPSSQPQLPN----TLPPLPTFPLPTAPKLTLPSLPTLPTVPFL 300
>TC19679 similar to UP|Q9SSX8 (Q9SSX8) WIZZ, partial (23%)
Length = 605
Score = 30.0 bits (66), Expect = 2.7
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Frame = +1
Query: 538 LSKSNLKSFSSN----DASPFSKSNLNNTNSTTKKLDLFRSQESKLTN-LRKALSNQ--I 590
L KS++K S+ + S N T T+ + + + S LT +R N+ I
Sbjct: 226 LRKSSVKEESNGALVEELKRVSAENKKLTEMLTEMCENYNTLRSNLTEYMRNNPDNKEVI 405
Query: 591 SPSKRKKGSESKSNKK-VKVKAKSESSGSKQATITK 625
S SK++K S +N + V SESS + + T K
Sbjct: 406 STSKKRKSESSNNNSNPLGVNGNSESSSTDEETCKK 513
>TC18818 similar to UP|Q8LJ87 (Q8LJ87) Extensin-like protein, partial (4%)
Length = 846
Score = 29.6 bits (65), Expect = 3.5
Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Frame = +3
Query: 13 LNSTQLYLNALQSLNLPPPT-LPLPPLPSSTIPHSKLIPNTRFLIDSFRHT-TPSSFT 68
++ T YLN L+S+ PPP+ P PP P+ P FL S RH P +F+
Sbjct: 6 ISKTPKYLNFLRSITPPPPSPSPSPPPPACPRP---------FLFVSSRHNHQPPAFS 152
>TC16697
Length = 635
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/70 (32%), Positives = 28/70 (39%)
Frame = -1
Query: 29 PPPTLPLPPLPSSTIPHSKLIPNTRFLIDSFRHTTPSSFTYFLSHFHSDHYSPLSSSWSH 88
PPP+ P PP PS P P + + + + T H H SP SSS S
Sbjct: 557 PPPSSPSPPAPSQRKPAPATAPPSNSSQSPPPNPSSTDPTSPAPQPHPSHLSPASSS-SQ 381
Query: 89 GIIFCSPITS 98
G SP S
Sbjct: 380 GSPVPSPSPS 351
>BE122436
Length = 371
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/29 (58%), Positives = 18/29 (61%), Gaps = 6/29 (20%)
Frame = +2
Query: 28 LPP-PTLP-----LPPLPSSTIPHSKLIP 50
LPP PTLP LPPLP+ TIP IP
Sbjct: 215 LPPFPTLPTQGANLPPLPTMTIPSLPTIP 301
>TC7823 similar to UP|O24470 (O24470) Lipoxygenase , partial (96%)
Length = 2909
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 778 PAPY-LHLARTFSLLEDEKGKIKATSILCNMFRSLLVLSPEDVLPAVYLCTNKIAADHEN 836
P P+ + ++++ + ++E G+ + N+ L P L EN
Sbjct: 1120 PKPHVIQVSKSAWMTDEEFGREMIAGVNPNVICRLQEFPPRSNLDVAIYGDRTSRITKEN 1299
Query: 837 VELNIGGSLVTTALEEACGTNRLKIKEMYN 866
+E+N+GG V EEA G RL I + ++
Sbjct: 1300 LEINLGGLTV----EEALGAQRLFILDYHD 1377
>TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial (69%)
Length = 1578
Score = 29.3 bits (64), Expect = 4.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 405 GRSGFEVGKDVGNDTEPGHSVEKEVKPSDVGGDKSID 441
G GF G++VG E GH V V DVG D D
Sbjct: 566 GEGGFGGGEEVGEAFEDGHLVCHLVDVGDVGRDGEAD 456
>AV427333
Length = 387
Score = 28.9 bits (63), Expect = 5.9
Identities = 23/68 (33%), Positives = 31/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 6 KSQTLESLNSTQLYLNALQSLNLP---PPTLPLPPL--PSSTIPHSKLIPNTRFLIDSFR 60
+ Q + LNSTQL L L S P P PPL ++T+P ++ LI S
Sbjct: 26 QEQEQDGLNSTQLLLPTLPSSTFPPLQPSNTTFPPL*PSTNTLPLLQISTTPLSLICSSS 205
Query: 61 HTTPSSFT 68
TP + T
Sbjct: 206TRTPFTTT 229
>TC10538 weakly similar to UP|Q8RW90 (Q8RW90) At1g12050/F12F1_8, partial (49%)
Length = 720
Score = 28.5 bits (62), Expect = 7.7
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 1353 NKRCRLYSIPSSPCCHW 1369
NK+CR+ +SPCCHW
Sbjct: 441 NKQCRI----TSPCCHW 479
>AW720491
Length = 509
Score = 28.5 bits (62), Expect = 7.7
Identities = 14/30 (46%), Positives = 16/30 (52%)
Frame = +3
Query: 15 STQLYLNALQSLNLPPPTLPLPPLPSSTIP 44
S+ + N SL LPPP P P S TIP
Sbjct: 327 SSASFANPSTSLPLPPPCAPPSPFSSLTIP 416
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,983,499
Number of Sequences: 28460
Number of extensions: 376172
Number of successful extensions: 3529
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3504
length of query: 1419
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1317
effective length of database: 1,994,680
effective search space: 2626993560
effective search space used: 2626993560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144375.6