TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144375.4 - phase: 0 
         (340 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11220 similar to UP|Q96259 (Q96259) AR401, partial (37%)            275  1e-74
TC9838 similar to UP|Q96347 (Q96347) SLL2, partial (28%)              191  2e-49
BP047635                                                               27  3.8
AV772272                                                               26  8.4
TC17103 homologue to UP|Q9FVD7 (Q9FVD7) Ser/Thr specific protein...    26  8.4

>TC11220 similar to UP|Q96259 (Q96259) AR401, partial (37%)
          Length = 536

 Score =  275 bits (702), Expect = 1e-74
 Identities = 138/163 (84%), Positives = 147/163 (89%), Gaps = 2/163 (1%)
 Frame = +3

Query: 1   MAGIRLQPEDSDVSQQARAVAL--VDLVSDDDRSIAADSWSIKSEYGSTLDDDQRHADAA 58
           MAGIRLQPEDSDVSQQ R+V+L   DLVSDDDRSIAADSWSIKSEYGSTLDDDQRHADAA
Sbjct: 48  MAGIRLQPEDSDVSQQVRSVSLSTADLVSDDDRSIAADSWSIKSEYGSTLDDDQRHADAA 227

Query: 59  EALSNVNLRAASDYSSDKDEPDAEAVSSMLGFQSYWDAAYTDELTNFHEHGHAGEVWFGD 118
           EALSN NL   SDYSSDK+EPDAEAV+S LGFQSYWDAAY+DELTNF EHGHAGEV FG 
Sbjct: 228 EALSNANLPPPSDYSSDKEEPDAEAVASRLGFQSYWDAAYSDELTNFREHGHAGEVGFGV 407

Query: 119 NVMEVVASWTKTLCIDISQGRLPNHVDDVKADAGELDDKLLSS 161
           +VMEVVASWT+ LCIDISQGRLPNH DDVKA+A EL DK+LSS
Sbjct: 408 DVMEVVASWTRALCIDISQGRLPNHTDDVKAEASELGDKILSS 536


>TC9838 similar to UP|Q96347 (Q96347) SLL2, partial (28%)
          Length = 562

 Score =  191 bits (484), Expect = 2e-49
 Identities = 95/114 (83%), Positives = 101/114 (88%)
 Frame = +1

Query: 227 FQLVMDKGTLDAIGLHPDGPVKRMMYWDSVSRLVAPGGILVVTSCNSTKDELVQEVESFN 286
           FQLV+DKGTLDAIGLHPDG VKRMMYWDSV++LVAPGGILV+TSCN+TKDELVQEVESFN
Sbjct: 1   FQLVVDKGTLDAIGLHPDGSVKRMMYWDSVAKLVAPGGILVITSCNNTKDELVQEVESFN 180

Query: 287 QRKSATAPEPEVAKDDESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAFLRK 340
           QR  A          +ESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAFLRK
Sbjct: 181 QRNHA----------EESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAFLRK 312


>BP047635 
          Length = 467

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 13/51 (25%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
 Frame = +2

Query: 76  KDEPDAEAVSSMLGFQSYW---DAAYTDELTNFHEHGHAGEVWFGDNVMEV 123
           K  P+A+        ++ W   +  YT+  T++H H H    W+   + EV
Sbjct: 83  KTSPNAQIKIHNFNNRTVWVVREGHYTNLQTHYHHHHHRDSAWWVGGLAEV 235


>AV772272 
          Length = 436

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (60%)
 Frame = -1

Query: 234 GTLDAIGLHPDGPVKRMMYWDSVSRLVAPGGILVVT 269
           GTLD + +H D PV R++   SVS +     I+V++
Sbjct: 109 GTLDNVYVHLDSPV*RIIK*SSVSNIKKNYQIVVIS 2


>TC17103 homologue to UP|Q9FVD7 (Q9FVD7) Ser/Thr specific protein
           phosphatase 2A A regulatory subunit alpha isoform,
           partial (19%)
          Length = 685

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 203 ANRDGFPNIKFLVDDVLETKLEQVFQLVMDK 233
           A++D  PNIKF V  VLE+    + Q V++K
Sbjct: 146 ASKDRVPNIKFNVAKVLESIFPILDQSVVEK 238


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,195,919
Number of Sequences: 28460
Number of extensions: 63795
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of query: 340
length of database: 4,897,600
effective HSP length: 91
effective length of query: 249
effective length of database: 2,307,740
effective search space: 574627260
effective search space used: 574627260
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)