BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144345.7 - phase: 0 /pseudo
(366 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 134 2e-32
AV780221 122 9e-29
AV780705 67 5e-12
BP060613 59 1e-09
BP085058 49 1e-06
TC13572 41 4e-06
CB828232 39 0.001
AV426437 37 0.005
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 31 0.28
TC17916 weakly similar to PIR|B97853|B97853 NADH2 dehydrogenase ... 29 1.4
TC10725 homologue to UP|Q9LIP9 (Q9LIP9) Glutamine-fructose-6-pho... 28 1.8
BP064845 28 1.8
BP079877 28 2.4
AW720120 28 3.1
TC11302 similar to UP|Q93ZM9 (Q93ZM9) AT5g13220/T31B5_40, partia... 28 3.1
BI418443 27 4.1
AW720106 27 5.4
TC14602 UP|Q8GS56 (Q8GS56) Phosphoenolpyruvate carboxylase kinas... 27 5.4
AV415491 27 5.4
TC8775 27 5.4
>AV767121
Length = 525
Score = 134 bits (337), Expect = 2e-32
Identities = 75/181 (41%), Positives = 99/181 (54%)
Frame = +2
Query: 24 LSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGGCEDIRK 83
LS WK + +S GGR+ L++ VL+++P++FLSFFK P G+ + L F WGG E+ K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 84 ITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARYGEEGGR 143
I +KW VC K GGLG++ L FN ALLGK WR L E +LW RV+ A+
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDH---- 349
Query: 144 LCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLEEKPLS* 203
SC GS WW IL + + GW + + VG G T FW + WL LS
Sbjct: 350 --YSC---GSSWWNDILSL---CPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLLSA 505
Query: 204 R 204
R
Sbjct: 506 R 508
>AV780221
Length = 461
Score = 122 bits (306), Expect = 9e-29
Identities = 66/162 (40%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Frame = +3
Query: 38 LILLKPVLSSIPVYFLSFFKAPSG-IISTLESLFNAFFWGGCEDIRKITWIKWETVCSRK 96
L L++ VL ++P++ L FFK P+G + + + + FF E +KI W+KW TVC K
Sbjct: 3 LCLIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPK 182
Query: 97 GEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARYGEEGGRLCCSCRDGGSVWW 156
EGGLGV+ L FN ALLGKW WR+L+ER LWY+VL +Y + S WW
Sbjct: 183 DEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKN-------AIPQSASSWW 341
Query: 157 QTILDV--RDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWL 196
+ DG G GWM + RR+G G FW + WL
Sbjct: 342 NDLHSTCFEDGGG----GWMQRGLCRRIGEGTEVKFWNENWL 455
>AV780705
Length = 524
Score = 67.0 bits (162), Expect = 5e-12
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Frame = -2
Query: 18 DRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGG 77
+++K +L WK L+ G+ +L+K ++ +IP Y ++ P ++L +L F+W
Sbjct: 424 EKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLYALVADFWWKS 245
Query: 78 C-EDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCAR 136
E + T K +GG+G R LR NLA L + WR+L LW RV+ +
Sbjct: 244 QGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSL 65
Query: 137 YGEEGGRLCCSCRDGGSVW 155
Y LC DG W
Sbjct: 64 YFPTPA-LCLLLWDGTHPW 11
>BP060613
Length = 378
Score = 59.3 bits (142), Expect = 1e-09
Identities = 36/103 (34%), Positives = 48/103 (45%), Gaps = 5/103 (4%)
Frame = +1
Query: 75 WGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLC 134
W + R + W KW+ + K EGGLG + N ALL K WRIL LW ++L
Sbjct: 46 WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225
Query: 135 ARYGEEGGRLCCSCRDGGSVWWQTILDVRD-----GVGQIDSG 172
A Y L + R G S W ++L R+ G Q+ SG
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSG 354
>BP085058
Length = 452
Score = 49.3 bits (116), Expect = 1e-06
Identities = 30/85 (35%), Positives = 45/85 (52%)
Frame = +2
Query: 17 VDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWG 76
+DR+ RL+ K+ L+ RL L KPVLS+I +Y + P I + ++ F W
Sbjct: 194 LDRVISRLAC*KAYLLNKPARLTLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVW- 370
Query: 77 GCEDIRKITWIKWETVCSRKGEGGL 101
E++ I + WET+ SRK GL
Sbjct: 371 --ENVNGIPLVAWETIQSRKSMVGL 439
>TC13572
Length = 534
Score = 41.2 bits (95), Expect(2) = 4e-06
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = -3
Query: 129 WYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLST 188
W RV+ A+YG+ G C + S WW+ + G ++GW + + + + +G T
Sbjct: 478 WCRVVLAKYGDGG---CTNI----SSWWRDVQTAGGG----ENGWFEEGVHKVLRSGNHT 332
Query: 189 LFWVDPW-----LEEKPLS*RRINYTRWPSCLREGGELMG 223
FW++ W L EK ++ +W S GG G
Sbjct: 331 RFWLENWTGVGILREKYYRLYNLSKLKWASIDECGGWSQG 212
Score = 25.4 bits (54), Expect(2) = 4e-06
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 110 NLALLGKWWWRI 121
N ALLGKW WR+
Sbjct: 534 NKALLGKWLWRL 499
>CB828232
Length = 532
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 27 WKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWG 76
WK+ LS G R+ K VLSS+P++FLSFFK + + + + F WG
Sbjct: 388 WKTLCLS-GARVCCFKMVLSSLPLFFLSFFKIKC-VAKVCKQIQSRFLWG 531
>AV426437
Length = 303
Score = 37.0 bits (84), Expect = 0.005
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 79 EDIRKITWIKWETVCSRKGEGGLGVRRLRE 108
E+ RKI WI WET+C K GLGV+ E
Sbjct: 214 ENQRKIAWINWETICKPKWLRGLGVKNWGE 303
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 16 LVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSI 48
LVDR +L W R+LS GRL L+ +L S+
Sbjct: 103 LVDRKPSKLQHWTGRSLSYAGRLQLINSILFSM 5
>TC17916 weakly similar to PIR|B97853|B97853 NADH2 dehydrogenase
(ubiquinone) - Rickettsia conorii
(strain Malish 7) {Rickettsia conorii;} , partial (3%)
Length = 520
Score = 28.9 bits (63), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (50%)
Frame = -2
Query: 41 LKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGGCEDIRKITWI 87
+KP+ S +FLSF SG+ TL SL WG ++ + WI
Sbjct: 375 IKPLYS----FFLSFKFLLSGVEITLVSLIKTSIWGKEKNEEQFAWI 247
>TC10725 homologue to UP|Q9LIP9 (Q9LIP9) Glutamine-fructose-6-phosphate
transaminase 2, partial (25%)
Length = 811
Score = 28.5 bits (62), Expect = 1.8
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 6/51 (11%)
Frame = -3
Query: 183 GNGLSTLFWVDPWLEEKPLS*RRI--NYTRWPSCLR----EGGELMGSVEV 227
GNG V WL KPLS N TR P CLR + GEL +++
Sbjct: 710 GNG*CLFCLVRRWLVNKPLSLHLFIYNTTRMPPCLRQRIADQGELSKDLDI 558
>BP064845
Length = 472
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -2
Query: 97 GEGGLGVR--RLREFNLALLGKWWW 119
GE GLGV R+ F L G WWW
Sbjct: 174 GELGLGVELGRVEPFETLLDGSWWW 100
>BP079877
Length = 381
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 45 LSSIPVYFLSFFKAPSGIISTLESLFNAF 73
+ +IP+YFLSFF S +IS+L S + F
Sbjct: 101 VKTIPLYFLSFFLLISFVISSLFSFKSHF 15
>AW720120
Length = 246
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 117 WWWRILQERGTLWYRVLCARYGEEGG 142
W+W + + +G W V A+ EEGG
Sbjct: 185 WFWWVKRRKGFYWLEVAEAKRREEGG 108
>TC11302 similar to UP|Q93ZM9 (Q93ZM9) AT5g13220/T31B5_40, partial (13%)
Length = 922
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 12/24 (49%)
Frame = -1
Query: 118 WWRILQERGTLWYRVLCARYGEEG 141
WWR RG+LW R C EG
Sbjct: 376 WWRSQTVRGSLWRRRACGNE*HEG 305
>BI418443
Length = 593
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 80 DIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWR 120
D K+ W + ++ GG G + LL +WWWR
Sbjct: 497 DSHKLLWRVRGPLLDKRAIGGGGRVEEHVVSAVLLWRWWWR 375
>AW720106
Length = 392
Score = 26.9 bits (58), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +2
Query: 111 LALLGKWWWRILQERGTLWYRVL 133
+ LL +W +L ERG LW RV+
Sbjct: 158 VVLLRQWEREVLLERGLLWLRVI 226
>TC14602 UP|Q8GS56 (Q8GS56) Phosphoenolpyruvate carboxylase kinase, complete
Length = 1256
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +1
Query: 117 WWWRILQERGTLWY-RVLCARYGEEGGR----LCCSCR-DGGSVW 155
WWWR E G W+ V+ R +E G LCC+ DG VW
Sbjct: 475 WWWR--SETGGFWFGGVVW*REEDEWGGWDAVLCCAGGFDGEGVW 603
>AV415491
Length = 365
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Frame = +1
Query: 83 KITWIKWETVC-SRKGEGGLGVRRLREFNLALLGKWWWRIL 122
+ +W+ + T C R+G+G L F ALLG W+WR +
Sbjct: 157 RASWMVFLTSC*HRRGQG-----LLLWFLEALLGTWFWRFI 264
>TC8775
Length = 810
Score = 26.9 bits (58), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +2
Query: 111 LALLGKWWWRILQERGTLWYRVL 133
+ LL +W +L ERG LW RV+
Sbjct: 161 VVLLRQWEREVLLERGLLWLRVI 229
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.350 0.159 0.603
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,192,263
Number of Sequences: 28460
Number of extensions: 142458
Number of successful extensions: 1887
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of query: 366
length of database: 4,897,600
effective HSP length: 92
effective length of query: 274
effective length of database: 2,279,280
effective search space: 624522720
effective search space used: 624522720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC144345.7