TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144345.13 + phase: 0 
         (471 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain...    28  2.5
TC17664                                                                28  4.2
BP042068                                                               28  4.2
AV766732                                                               27  5.5
AV780255                                                               27  5.5
TC13074 similar to GB|AAO42946.1|28416831|BT004700 At3g18880 {Ar...    27  5.5
TC15304                                                                27  7.2

>TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain (Beta-3
            tubulin), complete
          Length = 2208

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 227  HSFQANPENLSWPKRIMSLTPSDITWYRATCNFTNIIVSCGEYSNVP 273
            HS+ +N  + S P    +   S   WY AT +F  +  S    S++P
Sbjct: 1408 HSYVSNSSSSSSPSSSSTAVAS*YCWYSATKSFMLLSASVNSISSIP 1268


>TC17664 
          Length = 657

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 KFLYQQAFNFSKTNNVEAFYSILALLIYGLVLFPNID 169
           KF +  +F F    N E F+S   L++ G+   PN D
Sbjct: 475 KFFFIGSFMFVVAENNEVFFSC*LLIMLGMDYIPNFD 585


>BP042068 
          Length = 558

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 4/58 (6%)
 Frame = +1

Query: 189 LLADIYHSIHDRTQVG----RGAILGCAPLLYKWFTSHLPQTHSFQANPENLSWPKRI 242
           L+  I   + DR ++G    +  +L C P L K    +L +    Q NPEN  +PKRI
Sbjct: 340 LVEAIVLDVKDRDRIGGSYLKSDLLCCNPELSKDQNCNLGEV-IIQMNPENPQFPKRI 510


>AV766732 
          Length = 565

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 373 TTPAPALPLAPATVEECQERLAQSECVGATWKR 405
           TTP+    LAP T++EC   L +++ V  T  R
Sbjct: 331 TTPSCTTLLAPTTIQECAFLLQRNQLVKVTISR 233


>AV780255 
          Length = 550

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 15/45 (33%), Positives = 23/45 (50%)
 Frame = +1

Query: 115 SLIKEKLTLKGNLPSLPTKFLYQQAFNFSKTNNVEAFYSILALLI 159
           SL+     + GN PSL    L+   F+FS  + ++    ILAL +
Sbjct: 166 SLLPSLEVIYGNTPSLVFTLLWHSLFSFSTLDVLQLTLQILALCL 300


>TC13074 similar to GB|AAO42946.1|28416831|BT004700 At3g18880 {Arabidopsis
           thaliana;}, partial (79%)
          Length = 673

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 373 TTPAPALPLAPATVEECQERLAQSECVGATWKRKYDEA 410
           + P  +L L+P  +  C  R ++S    A W+R+ DEA
Sbjct: 40  SVPFISLSLSPPPISVCCRRASESGLRIAGWERREDEA 153


>TC15304 
          Length = 477

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -3

Query: 365 HLPRYLSSTTPAP---ALPLAPATVE 387
           H PR L ST P P   A+P+AP T +
Sbjct: 421 HQPRRLHSTAPEPKTSAVPIAPTTTK 344


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,891,834
Number of Sequences: 28460
Number of extensions: 138498
Number of successful extensions: 702
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of query: 471
length of database: 4,897,600
effective HSP length: 94
effective length of query: 377
effective length of database: 2,222,360
effective search space: 837829720
effective search space used: 837829720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)