BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144343.7 - phase: 0
(480 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV423524 250 4e-67
AV769898 231 2e-61
AV410467 176 1e-44
TC12061 similar to UP|Q9LN49 (Q9LN49) F18O14.21, partial (35%) 117 2e-30
TC8454 similar to UP|Q84UX3 (Q84UX3) Fatty acid elongase (Fragme... 122 1e-28
AV426594 119 8e-28
TC19140 similar to PIR|F86141|F86141 protein T25K16.11 [imported... 117 4e-27
TC13993 similar to UP|Q8VWP9 (Q8VWP9) Fiddlehead-like protein, p... 116 7e-27
TC8767 homologue to UP|Q8LAZ1 (Q8LAZ1) Very-long-chain fatty aci... 116 9e-27
TC8766 similar to UP|Q8LAZ1 (Q8LAZ1) Very-long-chain fatty acid ... 112 1e-25
AV409201 110 7e-25
AV427430 109 1e-24
TC16819 similar to UP|Q8LAZ1 (Q8LAZ1) Very-long-chain fatty acid... 108 2e-24
AV778558 106 1e-23
TC18581 similar to UP|Q9FG87 (Q9FG87) Beta-ketoacyl-CoA synthase... 87 2e-23
AV773511 104 4e-23
BP039611 103 5e-23
TC12004 similar to UP|Q8VWP9 (Q8VWP9) Fiddlehead-like protein, p... 102 1e-22
BP036446 91 5e-19
TC13771 84 7e-17
>AV423524
Length = 528
Score = 250 bits (638), Expect = 4e-67
Identities = 118/163 (72%), Positives = 146/163 (89%)
Frame = +2
Query: 62 IGLDECKFFLKAVVNSGIGEETYAPRNFIEGRTVNPTLEDGVEEMEEFCNDSITKLLNKS 121
+GL+E KF LKA+V+SGIGE+TYAPRN +GR +PTLEDG+ EMEEF NDSI KLL ++
Sbjct: 38 LGLNEYKFLLKAIVSSGIGEQTYAPRNVFDGREASPTLEDGILEMEEFFNDSIAKLLQRT 217
Query: 122 GISPSEIDILVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLSGMGCSASLISLDVIQNI 181
ISPSEID+LVVN+S+F++VPSL+SRIIN YK+R DIK YNL+GMGCSASLIS+D++QNI
Sbjct: 218 SISPSEIDVLVVNISMFAAVPSLSSRIINRYKLRHDIKVYNLTGMGCSASLISVDIVQNI 397
Query: 182 FKSEKNKYALLLTSESLSTNWYSGINRSMILANCLFRTGGCAI 224
FK++KNK ALL+TSESLS NWY+G +RSMILANCLFR+GGCA+
Sbjct: 398 FKTQKNKLALLVTSESLSPNWYNGNDRSMILANCLFRSGGCAM 526
>AV769898
Length = 460
Score = 231 bits (590), Expect = 2e-61
Identities = 108/140 (77%), Positives = 124/140 (88%)
Frame = -3
Query: 331 KSPVNFKTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLG 390
+S +NFK+GVDHF LHTGGKAVIDGIG+SLDL +YDLEPARM+LHRFGNTSASSLWYVLG
Sbjct: 455 RSGLNFKSGVDHFCLHTGGKAVIDGIGLSLDLCEYDLEPARMTLHRFGNTSASSLWYVLG 276
Query: 391 YMEAKKRLKKGERVLMISLGAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYPPHSLAN 450
YMEAKKRLKKG+RVLMIS GAGFKCNSC WEV++D+ + NVWDD ID YPP SLAN
Sbjct: 275 YMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVVKDL----EGRNVWDDRIDGYPPESLAN 108
Query: 451 PFMEKYGWINNIQDPSTFKL 470
PFM+K+GWINN++D + FKL
Sbjct: 107 PFMKKFGWINNVEDATNFKL 48
>AV410467
Length = 411
Score = 176 bits (445), Expect = 1e-44
Identities = 83/114 (72%), Positives = 97/114 (84%)
Frame = +3
Query: 1 MEFLTLLFIFTTMHLCFLIWKKFDQRRDQECYILNYQCYKPSDERKLGSVQCGKIIGNNE 60
MEFLTL + T ++LCFLIWK FDQRRDQECYIL+YQ YK SDERKLG+ CG+II N+
Sbjct: 66 MEFLTLFSLVTVLYLCFLIWKLFDQRRDQECYILDYQLYKGSDERKLGTDYCGRIIERNK 245
Query: 61 SIGLDECKFFLKAVVNSGIGEETYAPRNFIEGRTVNPTLEDGVEEMEEFCNDSI 114
S+GL+E KF LKA+VNSGIGEETYAPRNF+EGR +PTL+DGVEEMEEF D+I
Sbjct: 246 SLGLNEYKFLLKAIVNSGIGEETYAPRNFLEGRESSPTLKDGVEEMEEFFQDTI 407
>TC12061 similar to UP|Q9LN49 (Q9LN49) F18O14.21, partial (35%)
Length = 613
Score = 117 bits (292), Expect(2) = 2e-30
Identities = 67/159 (42%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Frame = +1
Query: 205 GINRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDE 264
G +SM++ NCLFR GG A+LL+NK S K +A KL +VRTH GA D A C Q++DE
Sbjct: 7 GNKKSMLIPNCLFRVGGSAVLLSNKASDKFRAKYKLVHVVRTHKGADDKAFRCVYQEQDE 186
Query: 265 QGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPARELLRYMLMSLIKKVIKYFAPKSAAR 324
GK G L+KDL A A N+ L P +LP E L + ++KKV
Sbjct: 187 AGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPVSEQLLFFATLIVKKV----------- 333
Query: 325 WFGTSSKSPV-NFKTGVDHFVLHTGGKAVIDGIGMSLDL 362
F +K + +FK DHF +H GG+AVID + +L L
Sbjct: 334 -FNAKAKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQL 447
Score = 32.7 bits (73), Expect(2) = 2e-30
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = +3
Query: 378 GNTSASSLWYVLGYMEA 394
GNTS+SS+WY LGY EA
Sbjct: 495 GNTSSSSIWYELGYTEA 545
>TC8454 similar to UP|Q84UX3 (Q84UX3) Fatty acid elongase (Fragment),
partial (50%)
Length = 661
Score = 122 bits (307), Expect = 1e-28
Identities = 54/112 (48%), Positives = 80/112 (71%)
Frame = +1
Query: 335 NFKTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEA 394
+FK +HF +H GG+AV+D + +LDL+D+ +EP+RM+L+RFGNTS+SSLWY L Y EA
Sbjct: 37 DFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTSSSSLWYELAYTEA 216
Query: 395 KKRLKKGERVLMISLGAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYPPH 446
K R++KG+R I+ G+GFKCNS W+ ++ + ++ N W D I +P H
Sbjct: 217 KGRIRKGDRTWQIAFGSGFKCNSAVWQALKTINPAKEK-NPWMDEIHEFPVH 369
>AV426594
Length = 415
Score = 119 bits (299), Expect = 8e-28
Identities = 58/137 (42%), Positives = 87/137 (63%)
Frame = +1
Query: 168 CSASLISLDVIQNIFKSEKNKYALLLTSESLSTNWYSGINRSMILANCLFRTGGCAILLT 227
CSA +IS+D+ + + + N YAL+++ E+++ NWY G +RS +++NCLFR GG AILL+
Sbjct: 4 CSAGIISIDLAKELLQVHPNSYALVVSMENITLNWYPGNDRSKLVSNCLFRMGGAAILLS 183
Query: 228 NKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDN 287
NK S + ++ +L VRTH G+ D +C +Q+ED GK G L+KDL A A N
Sbjct: 184 NKSSDRRRSKYQLVDTVRTHKGSDDKCFSCVTQEEDANGKTGVTLSKDLMAVAGDALKTN 363
Query: 288 LRVLSPKILPARELLRY 304
+ L P +LP E L +
Sbjct: 364 ITTLGPLVLPTSEQLLF 414
>TC19140 similar to PIR|F86141|F86141 protein T25K16.11 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(14%)
Length = 525
Score = 117 bits (293), Expect = 4e-27
Identities = 54/96 (56%), Positives = 74/96 (76%), Gaps = 1/96 (1%)
Frame = +2
Query: 350 KAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISL 409
+AV+D + +L+L+++ +EP+RM+LHRFGNTS+SSLWY L Y EAK R+ KG+RV I+
Sbjct: 2 RAVLDEMQKNLELSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKARVGKGDRV*QIAF 181
Query: 410 GAGFKCNSCYWEVMRDV-VVGDDRNNVWDDCIDYYP 444
G+GFKCNS W+ +RD+ +GD R N WDD ID YP
Sbjct: 182 GSGFKCNSAVWKAVRDMPELGDWRGNPWDDSIDKYP 289
>TC13993 similar to UP|Q8VWP9 (Q8VWP9) Fiddlehead-like protein, partial
(26%)
Length = 437
Score = 116 bits (291), Expect = 7e-27
Identities = 55/128 (42%), Positives = 87/128 (67%)
Frame = +3
Query: 69 FFLKAVVNSGIGEETYAPRNFIEGRTVNPTLEDGVEEMEEFCNDSITKLLNKSGISPSEI 128
F + +++SGIG+ETY P+ + T T+++G E ++ +L K+GI P +I
Sbjct: 54 FQKRILMSSGIGDETYIPKAVVSSTTNTATMKEGRAEASTVMFGALDELFEKTGIRPKDI 233
Query: 129 DILVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLSGMGCSASLISLDVIQNIFKSEKNK 188
ILVVN S+F+ PSL++ IINHYKMR +I +YNL GMGCSA +I +D+ ++I +S N
Sbjct: 234 GILVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIGVDLARDILQSNPNN 413
Query: 189 YALLLTSE 196
YA+++++E
Sbjct: 414 YAVVVSTE 437
>TC8767 homologue to UP|Q8LAZ1 (Q8LAZ1) Very-long-chain fatty acid
condensing enzyme CUT1, partial (23%)
Length = 770
Score = 116 bits (290), Expect = 9e-27
Identities = 55/110 (50%), Positives = 74/110 (67%)
Frame = +1
Query: 337 KTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKK 396
K +HF +H GG+AVID + +L L+ +E +RM+LHRFGNTS+SSLWY L Y+E+K
Sbjct: 1 KQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKG 180
Query: 397 RLKKGERVLMISLGAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYPPH 446
R+K+G+RV I+ G+GFKCNS W+ R + D DCID YP H
Sbjct: 181 RMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFD--GPCSDCIDRYPVH 324
>TC8766 similar to UP|Q8LAZ1 (Q8LAZ1) Very-long-chain fatty acid condensing
enzyme CUT1, partial (31%)
Length = 462
Score = 112 bits (281), Expect = 1e-25
Identities = 61/163 (37%), Positives = 95/163 (57%)
Frame = +3
Query: 187 NKYALLLTSESLSTNWYSGINRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRT 246
N A+++++E ++ N+Y G R+M+L NCLFR GG AI+L+N+ S +A KL +VRT
Sbjct: 6 NSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIMLSNRSSESSRAKYKLVHVVRT 185
Query: 247 HHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPARELLRYML 306
H G+ D A+ C ++ED++GK+G L KDL A A N+ + P +LPA E + ++
Sbjct: 186 HKGSDDKAYRCVFEEEDKEGKVGISLQKDLMAIAGEALKSNITTMGPLVLPASEQVLFLA 365
Query: 307 MSLIKKVIKYFAPKSAARWFGTSSKSPVNFKTGVDHFVLHTGG 349
+ +K+ F PK W +FK +HF +H GG
Sbjct: 366 TLIGRKI---FNPK----W----KPYIPDFKQAFEHFCIHAGG 461
>AV409201
Length = 426
Score = 110 bits (274), Expect = 7e-25
Identities = 55/131 (41%), Positives = 87/131 (65%)
Frame = +2
Query: 190 ALLLTSESLSTNWYSGINRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHG 249
A+++++E ++ N+Y G R+M+L NCLFR GG AILLTN++S K +A +L +VRTH G
Sbjct: 8 AVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAILLTNRKSAKTRAKYRLVHVVRTHKG 187
Query: 250 ARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPARELLRYMLMSL 309
+ D A+ C ++ED++GK+G L+KDL A A N+ + P +LPA E L +++ +
Sbjct: 188 SDDKAYRCVYEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPIVLPASEQLIFLVTLI 367
Query: 310 IKKVIKYFAPK 320
+K+ F PK
Sbjct: 368 GRKI---FNPK 391
>AV427430
Length = 345
Score = 109 bits (272), Expect = 1e-24
Identities = 52/112 (46%), Positives = 79/112 (70%)
Frame = +2
Query: 169 SASLISLDVIQNIFKSEKNKYALLLTSESLSTNWYSGINRSMILANCLFRTGGCAILLTN 228
SA LIS+D+ +++ K+ N YA+++++E+++ NWY G +RSM+L NC+FR GG A+LL+N
Sbjct: 5 SAGLISIDLAKDLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAVLLSN 184
Query: 229 KRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAA 280
K S + K+ +L VRTH G D +NC Q EDE+GK+G LA++L A
Sbjct: 185 KSSDRAKSKYELVHTVRTHKGFDDKHYNCVYQMEDEKGKVGVCLARELMAVA 340
>TC16819 similar to UP|Q8LAZ1 (Q8LAZ1) Very-long-chain fatty acid condensing
enzyme CUT1, partial (21%)
Length = 723
Score = 108 bits (270), Expect = 2e-24
Identities = 50/98 (51%), Positives = 68/98 (69%)
Frame = +1
Query: 349 GKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMIS 408
G+AVID + +L L+ +E +RM+LHRFGNTS+SSLWY L Y+E+K R+K+G+R+ I
Sbjct: 1 GRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRIWQIG 180
Query: 409 LGAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYPPH 446
G+GFKCNS W+ R + D W+DCID YP H
Sbjct: 181 FGSGFKCNSAVWKCNRSIKTPVD--GPWEDCIDRYPVH 288
>AV778558
Length = 444
Score = 106 bits (264), Expect = 1e-23
Identities = 60/151 (39%), Positives = 87/151 (56%)
Frame = -2
Query: 294 KILPARELLRYMLMSLIKKVIKYFAPKSAARWFGTSSKSPVNFKTGVDHFVLHTGGKAVI 353
+ILP E Y + + KK IK + NFKT + HF L G+AVI
Sbjct: 437 EILPPSEKFWYGVSVIQKKFIK------------SEGIYVPNFKTVIQHFCLPCSGRAVI 294
Query: 354 DGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGF 413
+G L L + D+EPA M+L+RFG+ S+SSLWY L Y+EAK+R++KG++V + +G+G
Sbjct: 293 REVGKGLKLAERDIEPAMMTLYRFGDPSSSSLWYELAYLEAKERVQKGDKVWPLGMGSGP 114
Query: 414 KCNSCYWEVMRDVVVGDDRNNVWDDCIDYYP 444
KC + +R +VG+ + W DCI YP
Sbjct: 113 KCIRVVLKCVRP-LVGESQKGPWADCIHPYP 24
>TC18581 similar to UP|Q9FG87 (Q9FG87) Beta-ketoacyl-CoA synthase
(AT5g43760/MQD19_11), partial (28%)
Length = 465
Score = 86.7 bits (213), Expect(2) = 2e-23
Identities = 45/108 (41%), Positives = 65/108 (59%)
Frame = +2
Query: 208 RSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGK 267
R M+++NCLFR GG AILL++K S + +A +L VRTH GA D ++ C Q+EDE
Sbjct: 122 RPMLVSNCLFRMGGAAILLSSKSSDRRRAKYQLVHTVRTHKGADDKSYGCVFQEEDETKT 301
Query: 268 LGFYLAKDLPKAATRAFTDNLRVLSPKILPARELLRYMLMSLIKKVIK 315
+G L+KDL A A N+ L P +LP E + + + + +KV K
Sbjct: 302 VGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQILFFVTLVARKVFK 445
Score = 39.7 bits (91), Expect(2) = 2e-23
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 169 SASLISLDVIQNIFKSEKNKYALLLTSESLSTNWYSGIN 207
SA LIS+D+ + + + N YAL+++ E+++ NWY G N
Sbjct: 4 SAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNN 120
>AV773511
Length = 463
Score = 104 bits (259), Expect = 4e-23
Identities = 49/95 (51%), Positives = 66/95 (68%)
Frame = -2
Query: 350 KAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISL 409
+AVID + +L L +E +RM+LHRFG TS+SS+WY L Y+EAK R++KG R+ I+
Sbjct: 462 RAVIDELEKNLQLLPVHVEASRMTLHRFGYTSSSSIWYELAYIEAKGRVRKGNRLWQIAF 283
Query: 410 GAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYP 444
G+GFKCNS WE +R+ V N W+DCID YP
Sbjct: 282 GSGFKCNSAVWEALRN--VRSSPNGPWEDCIDKYP 184
>BP039611
Length = 509
Score = 103 bits (258), Expect = 5e-23
Identities = 51/97 (52%), Positives = 66/97 (67%)
Frame = -1
Query: 348 GGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMI 407
GGK+VI+ I SL+L D E +RM+L+RFGNTS+SSLWY L Y+EAK R+KKG R I
Sbjct: 506 GGKSVINAIEESLNLQKEDAEASRMALYRFGNTSSSSLWYELCYLEAKGRVKKGHRAWQI 327
Query: 408 SLGAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYP 444
+ G+GFKCNS W+ + D + + N W D I YP
Sbjct: 326 AFGSGFKCNSAVWKCLYD--IDPNVRNAWSDRIHLYP 222
>TC12004 similar to UP|Q8VWP9 (Q8VWP9) Fiddlehead-like protein, partial
(18%)
Length = 567
Score = 102 bits (255), Expect = 1e-22
Identities = 46/95 (48%), Positives = 70/95 (73%)
Frame = +3
Query: 350 KAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISL 409
K ++D + +L+L++ ++E +RM+LHRFGNTS+SS+WY L YMEAK+R+++G+RV ++
Sbjct: 6 KPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLAF 185
Query: 410 GAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYP 444
G+GFKC+ W M+ V RNN W DCI+ YP
Sbjct: 186 GSGFKCHRVVWLSMKR-VNQPSRNNPWLDCINRYP 287
>BP036446
Length = 522
Score = 90.5 bits (223), Expect = 5e-19
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Frame = -1
Query: 286 DNLRVLSPKILPARELLRYMLMSLIK-KVIKYFAPKSAARWFGTSSKSPVNFKTGVDHFV 344
DN+ L P +LP E + + + K K + P ++K +H
Sbjct: 516 DNITTLGPLVLPVSEQFHFFTNLVFRRKKTKPYIP---------------DYKLAFEHVC 382
Query: 345 LHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERV 404
+ K V+D + +L+L + +E +R +L RFGNTS+SS WY L Y+E ++R++KG+RV
Sbjct: 381 VVATSKKVLDEVQKNLELTEEYMEASRKTLERFGNTSSSSNWYELAYLEFEERVQKGDRV 202
Query: 405 LMISLGAGFKCNSCYWEVMRDV 426
I+ G+GF CNS W+ +++V
Sbjct: 201 CQIAAGSGFMCNSVVWKALKNV 136
>TC13771
Length = 474
Score = 83.6 bits (205), Expect = 7e-17
Identities = 36/58 (62%), Positives = 43/58 (74%)
Frame = +2
Query: 404 VLMISLGAGFKCNSCYWEVMRDVVVGDDRNNVWDDCIDYYPPHSLANPFMEKYGWINN 461
+LMISLG GFKC+ C WEVMRD+ NVW DCID YPP++L NPF EKY W+N+
Sbjct: 2 ILMISLGTGFKCHHCVWEVMRDL----SDANVWKDCIDSYPPNTLDNPFKEKYNWLND 163
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,215,531
Number of Sequences: 28460
Number of extensions: 133485
Number of successful extensions: 657
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of query: 480
length of database: 4,897,600
effective HSP length: 94
effective length of query: 386
effective length of database: 2,222,360
effective search space: 857830960
effective search space used: 857830960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144343.7