BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143341.11 - phase: 0
(289 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding pro... 121 1e-28
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 91 3e-19
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 89 1e-18
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 87 3e-18
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 84 3e-17
TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive e... 84 3e-17
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 84 3e-17
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 84 4e-17
TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive elem... 84 4e-17
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 83 5e-17
TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like ... 82 8e-17
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 80 5e-16
TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elemen... 79 7e-16
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 79 1e-15
BP036840 79 1e-15
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 77 3e-15
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 77 4e-15
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 75 2e-14
TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene respon... 73 5e-14
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 71 2e-13
>TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding protein,
partial (27%)
Length = 1135
Score = 121 bits (304), Expect = 1e-28
Identities = 56/84 (66%), Positives = 66/84 (77%)
Frame = +1
Query: 6 KKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEE 65
+K P K KKG +GKGGP+N+ C YRGVRQRTWGKWVAEIREP + RLWLG+FATA
Sbjct: 313 RKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFATAIG 492
Query: 66 AAMAYDEAARRLYGPDAYLNLPHM 89
AA+AYDEAAR +YG A LN P++
Sbjct: 493 AALAYDEAARAMYGSSARLNFPNV 564
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 90.5 bits (223), Expect = 3e-19
Identities = 44/77 (57%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Frame = +3
Query: 14 KKGPTRGKGGPQNASCE---YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAY 70
KK G GG + YRG+RQR WGKW AEIR+P+K R+WLG+F TAEEAA AY
Sbjct: 342 KKKSVVGSGGAGKKNARKNVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFPTAEEAARAY 521
Query: 71 DEAARRLYGPDAYLNLP 87
DEAA+R+ G A LN P
Sbjct: 522 DEAAKRIRGDKAKLNFP 572
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 88.6 bits (218), Expect = 1e-18
Identities = 50/113 (44%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Frame = +2
Query: 13 WKKGPTRGKGGPQNASCE----------YRGVRQRTWGKWVAEIREPKKRTRLWLGSFAT 62
+ KG T K N E YRG+RQR WGKW AEIR+P+K R+WLG+F T
Sbjct: 440 FSKGSTAAKSVESNEQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNT 619
Query: 63 AEEAAMAYDEAARRLYGPDAYLNLPHMQTHSNSTMKTGKFKWLPSKNFISMFP 115
AEEAA AYD ARR+ G A +N P S+ +K K L N S+ P
Sbjct: 620 AEEAARAYDAEARRIRGNKAKVNFPVEPQLSSKRLKANPEKQLLKGNPNSVQP 778
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 87.0 bits (214), Expect = 3e-18
Identities = 46/76 (60%), Positives = 53/76 (69%)
Frame = +2
Query: 4 NSKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATA 63
N+ S L P K P + P + YRGVRQR WGKWVAEIR PK RTRLWLG+F TA
Sbjct: 953 NTTLSFLSP-KPIPMKHVANPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTA 1129
Query: 64 EEAAMAYDEAARRLYG 79
EEAA+AYD+AA +L G
Sbjct: 1130 EEAALAYDKAAYKLRG 1177
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 84.0 bits (206), Expect = 3e-17
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +3
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPH 88
YRG+RQR WGKW AEIR+P+K R+WLG+F TAEEAA AYD AR++ G A +N P+
Sbjct: 396 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPN 569
>TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive element
binding protein, partial (37%)
Length = 382
Score = 84.0 bits (206), Expect = 3e-17
Identities = 37/59 (62%), Positives = 44/59 (73%)
Frame = +1
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHM 89
YRG+RQR WGKWVAE+REP KR+R+WLGS+A+ AA AYD A L GP A LN P +
Sbjct: 151 YRGIRQRKWGKWVAEVREPNKRSRIWLGSYASPVAAARAYDTAVFYLRGPSARLNFPEL 327
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 84.0 bits (206), Expect = 3e-17
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Frame = +3
Query: 24 PQNASCE--YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPD 81
P N + E +RGVR+R WG++ AEIR+P K++R+WLG+F TAEEAA AYD AAR+ GP
Sbjct: 150 PSNNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPK 329
Query: 82 AYLNLPHMQTHSNST 96
A N P + N+T
Sbjct: 330 AKTNFPQSPSPDNNT 374
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 83.6 bits (205), Expect = 4e-17
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = +2
Query: 14 KKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEA 73
++G +GK +N YRG+RQR WGKW AEIR+P+K R+ LG+F TAEEAA AYD+A
Sbjct: 296 EEGIKKGKRVRKNL---YRGIRQRPWGKWAAEIRDPRKGVRVGLGTFNTAEEAAQAYDDA 466
Query: 74 ARRLYGPDAYLNLP 87
A+R+ G A LN P
Sbjct: 467 AKRIRGDKAKLNFP 508
>TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (47%)
Length = 1174
Score = 83.6 bits (205), Expect = 4e-17
Identities = 42/87 (48%), Positives = 54/87 (61%)
Frame = +1
Query: 1 MMDNSKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSF 60
M K + +K G G GG + +RGVR+R WG++ AEIR+P K++R+WLG+F
Sbjct: 115 MAPRDKTNAVKVSGNGNGNGNGGVKEV--HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTF 288
Query: 61 ATAEEAAMAYDEAARRLYGPDAYLNLP 87
TAEEAA AYD AAR GP A N P
Sbjct: 289 DTAEEAARAYDTAAREFRGPKAKTNFP 369
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 83.2 bits (204), Expect = 5e-17
Identities = 39/63 (61%), Positives = 45/63 (70%)
Frame = +3
Query: 25 QNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYL 84
Q +YRGVRQR WGKW AEIR+P K R+WLG+F TAEEAA AYD+A+ R G A L
Sbjct: 192 QQPKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEEAARAYDQASLRFRGNKAKL 371
Query: 85 NLP 87
N P
Sbjct: 372 NFP 380
>TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like protein,
partial (29%)
Length = 454
Score = 82.4 bits (202), Expect = 8e-17
Identities = 41/83 (49%), Positives = 50/83 (59%)
Frame = +3
Query: 5 SKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAE 64
S SP P + N YRGVR RTWGKWV+EIREP+K++R+WLG+F T E
Sbjct: 210 SSSSP--PQSNNNNTKRNRESNTHAVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFCTPE 383
Query: 65 EAAMAYDEAARRLYGPDAYLNLP 87
AA A+D AA + G A LN P
Sbjct: 384 MAARAHDVAALSIKGSAAILNFP 452
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 79.7 bits (195), Expect = 5e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +2
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP 87
YRGVR+R WG++ AEIR+P K+ R+WLG+F +AEEAA AYD AAR L GP A N P
Sbjct: 434 YRGVRKRPWGRFAAEIRDPMKKARVWLGTFDSAEEAARAYDAAARALRGPKAKTNFP 604
>TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (33%)
Length = 580
Score = 79.3 bits (194), Expect = 7e-16
Identities = 40/88 (45%), Positives = 52/88 (58%), Gaps = 1/88 (1%)
Frame = +3
Query: 3 DNSKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKR-TRLWLGSFA 61
+NS S K R P +RGVR+R WGK+ AEIR+PKK R+WLG++
Sbjct: 213 NNSSPSGCKKGSSAEARSSHAPPAEWKRFRGVRRRPWGKFAAEIRDPKKNGARVWLGTYE 392
Query: 62 TAEEAAMAYDEAARRLYGPDAYLNLPHM 89
T EEA +AYD AA ++ G A LN PH+
Sbjct: 393 TEEEAGLAYDRAAFKIRGRKAKLNFPHL 476
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 78.6 bits (192), Expect = 1e-15
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +2
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP 87
YRGVR+R WG++ AEIR+P K+TR+WLG+F T EEAA+AYD AAR L G A N P
Sbjct: 185 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFP 355
>BP036840
Length = 584
Score = 78.6 bits (192), Expect = 1e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = +3
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP 87
YRGVR+R WG+WV+EIREP+K++R+WLGSF E AA AYD AA L G A LN P
Sbjct: 87 YRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFP 257
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 77.4 bits (189), Expect = 3e-15
Identities = 34/64 (53%), Positives = 45/64 (70%)
Frame = +1
Query: 24 PQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAY 83
P+ +RGVR+R WG++ AEIR+P K+ R+WLG+F +AE+AA AYD AAR GP A
Sbjct: 220 PETKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAK 399
Query: 84 LNLP 87
N P
Sbjct: 400 TNFP 411
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 76.6 bits (187), Expect = 4e-15
Identities = 39/65 (60%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Frame = +2
Query: 24 PQNASCEYRGVRQRTWGKWVAEIREPKKR-TRLWLGSFATAEEAAMAYDEAARRLYGPDA 82
P YRGVRQR WGK+ AEIR+P KR +R+WLG+F TA EAA AYD AA +L G A
Sbjct: 530 PAEKKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKA 709
Query: 83 YLNLP 87
LN P
Sbjct: 710 ILNFP 724
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 74.7 bits (182), Expect = 2e-14
Identities = 43/98 (43%), Positives = 56/98 (56%), Gaps = 12/98 (12%)
Frame = +1
Query: 2 MDNSKKSPLKPWKKGPTRGKGGP-------QNASC----EYRGVRQRTWGKWVAEIREP- 49
M + K+ + P G T+ P Q +C YRGVR+R WGK+ AEIR+P
Sbjct: 64 MSHEAKNSITPTHSGETQKSSSPEPEVSGKQEQTCYQGRRYRGVRRRPWGKFAAEIRDPT 243
Query: 50 KKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP 87
+K TR+WLG+F T +AA AYD AA R+ G A LN P
Sbjct: 244 RKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFP 357
>TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
element binding factor 5 (ATERF5) {Arabidopsis
thaliana;} , partial (22%)
Length = 785
Score = 73.2 bits (178), Expect = 5e-14
Identities = 37/58 (63%), Positives = 42/58 (71%), Gaps = 1/58 (1%)
Frame = +1
Query: 31 YRGVRQRTWGKWVAEIREPKKR-TRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP 87
YRGVRQR WGK+ AEIR+P KR +RLWLG+F TA EAA YD AA G +A LN P
Sbjct: 607 YRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFDTAIEAAKVYDRAAFTFRGLEAVLNFP 780
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 71.2 bits (173), Expect = 2e-13
Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = +3
Query: 31 YRGVRQRTWGKWVAEIREP-KKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP 87
YRGVR+R WGK+ AEIR+P +K +R+WLG+F TA EAA AYD AA ++ G A LN P
Sbjct: 390 YRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNFP 563
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,024,461
Number of Sequences: 28460
Number of extensions: 65431
Number of successful extensions: 342
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of query: 289
length of database: 4,897,600
effective HSP length: 89
effective length of query: 200
effective length of database: 2,364,660
effective search space: 472932000
effective search space used: 472932000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC143341.11