BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142526.10 + phase: 0
(401 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13671 weakly similar to UP|CND0_MOUSE (Q8BU04) Protein C14orf1... 279 7e-76
AV407489 179 7e-46
TC8465 similar to UP|O65462 (O65462) Receptor like protein (Frag... 40 0.001
TC9364 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment... 32 0.19
TC14993 similar to UP|O04237 (O04237) Transcription factor, part... 31 0.32
CB828199 29 1.2
TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial ... 29 1.6
BP046167 29 1.6
TC18847 similar to UP|Q9LM40 (Q9LM40) T10O22.3 (AT1g18060/T10F20... 28 2.1
BP038568 28 3.5
AW720417 28 3.5
TC8670 weakly similar to UP|Q9ZRD1 (Q9ZRD1) NTGP4 (Fragment), pa... 27 4.6
TC19107 similar to UP|Q94JT2 (Q94JT2) AT5g17630/K10A8_110, parti... 27 7.9
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 27 7.9
AW719373 27 7.9
TC18629 27 7.9
>TC13671 weakly similar to UP|CND0_MOUSE (Q8BU04) Protein C14orf130 homolog,
partial (23%)
Length = 583
Score = 279 bits (713), Expect = 7e-76
Identities = 118/134 (88%), Positives = 126/134 (93%)
Frame = +3
Query: 14 ADLVLGGDEGRECTYNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKR 73
ADL++GGD G+ECTYNKGYMKRQAIFSC+TCTPDGNAGVCTACSLSCHDGHQ+VELWTKR
Sbjct: 180 ADLIVGGDAGKECTYNKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQVVELWTKR 359
Query: 74 NFRCDCGNSKFGEFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMIQC 133
NFRCDCGNSKFGEFYCKIFPSKD+EN EN+YNHNFKGLYCTC PYP D EEQ+EMIQC
Sbjct: 360 NFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKGLYCTCGLPYPGLDVEEQVEMIQC 539
Query: 134 CLCEDWFHEEHLGL 147
CLCEDWFH EHLGL
Sbjct: 540 CLCEDWFHVEHLGL 581
>AV407489
Length = 415
Score = 179 bits (454), Expect = 7e-46
Identities = 78/108 (72%), Positives = 89/108 (82%)
Frame = +3
Query: 24 RECTYNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSK 83
++ T NKG++KRQAI SC+TC PDG GVCTACS CHDGHQIV LWTKRNFRCDCGNS
Sbjct: 90 QQLTNNKGFLKRQAISSCLTCIPDGIDGVCTACSKCCHDGHQIV*LWTKRNFRCDCGNSM 269
Query: 84 FGEFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMI 131
FG+F+ KIFP KD+EN EN+ NHNF GLYCTC PYPD D EEQ++MI
Sbjct: 270 FGDFFGKIFPIKDVENAENADNHNFIGLYCTCGLPYPDLDVEEQVQMI 413
>TC8465 similar to UP|O65462 (O65462) Receptor like protein (Fragment),
partial (39%)
Length = 604
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/62 (35%), Positives = 30/62 (47%)
Frame = +3
Query: 111 LYCTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHLGLESSDEIPRDEEGEPLYEDFMCKA 170
+YC C PY D M+QC C+DW+H +G+ EE + L E F+C
Sbjct: 27 VYCKCEMPYNPDDL-----MVQCEGCKDWYHPACVGMTI-------EEAKKL-EHFVCSE 167
Query: 171 CS 172
CS
Sbjct: 168 CS 173
>TC9364 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(20%)
Length = 565
Score = 32.0 bits (71), Expect = 0.19
Identities = 20/58 (34%), Positives = 25/58 (42%)
Frame = +2
Query: 115 CARPYPDPDAEEQIEMIQCCLCEDWFHEEHLGLESSDEIPRDEEGEPLYEDFMCKACS 172
C PY D M+QC C DWFH + + EE E L + F C+ CS
Sbjct: 5 CEMPYHPDDL-----MVQCEGCSDWFHPACIDMTV-------EEAERL-DHFYCEGCS 139
>TC14993 similar to UP|O04237 (O04237) Transcription factor, partial (31%)
Length = 846
Score = 31.2 bits (69), Expect = 0.32
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 315 DKEDSIVEYEKMAKQKR------EEKLQQQEGAELSLFNKLGH-VEKVEILKGIEDMKDG 367
DKE ++ EYEK+ ++KR + ++++ + E L H + EI + KD
Sbjct: 94 DKEMTLEEYEKVLEEKRKALQALKTEVRKVDAKEFESMQPLSHKKDNDEIFAKLGSDKDK 273
Query: 368 LRTFLESADSSKPISAADIHQFFDDIKNKR 397
R +E S K +S I++F + +R
Sbjct: 274 RRDAIEKEKSKKSVS---INEFLKPAEGER 354
>CB828199
Length = 511
Score = 29.3 bits (64), Expect = 1.2
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Frame = -1
Query: 28 YNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFG-- 85
+ K +R+ I + C PD A CS++C + + + C KF
Sbjct: 481 FQKTVAQREKISYSLQCIPDAKAPWTAMCSIAC--------MSSTSSAVCGVNGCKFAIK 326
Query: 86 -EFYCK--IFPSKDIENVENSYN-HNFKGLYCTCARPY 119
+ +C I PS ++ + H+ + C C+RPY
Sbjct: 325 DDSFCSHHILPSVP**HLYDFMKIHSSRNRICICSRPY 212
>TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial (53%)
Length = 1554
Score = 28.9 bits (63), Expect = 1.6
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 2/40 (5%)
Frame = -3
Query: 78 DCGNSKFG--EFYCKIFPSKDIENVENSYNHNFKGLYCTC 115
DC +S E C F KDI N E SYN + L C+C
Sbjct: 511 DCTDSPINLEEQICNWFSRKDIPNHELSYNIVSRLLVCSC 392
>BP046167
Length = 503
Score = 28.9 bits (63), Expect = 1.6
Identities = 11/38 (28%), Positives = 20/38 (51%)
Frame = -1
Query: 131 IQCCLCEDWFHEEHLGLESSDEIPRDEEGEPLYEDFMC 168
++CC+ W H S ++ + EG+PL++D C
Sbjct: 386 VECCMRSLWDHTNGDHHVSRSDLRSNSEGDPLWKDEKC 273
>TC18847 similar to UP|Q9LM40 (Q9LM40) T10O22.3 (AT1g18060/T10F20.23),
partial (32%)
Length = 526
Score = 28.5 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +1
Query: 279 VIHGKAMFLSKNWRDALCKCKN---CLEYY 305
+ HG L K W A+C+C+N C YY
Sbjct: 424 LFHGGRPLLGKKWGQAICECQNMFYC*LYY 513
>BP038568
Length = 553
Score = 27.7 bits (60), Expect = 3.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 7/72 (9%)
Frame = +1
Query: 315 DKEDSIVEYEKMAKQKR------EEKLQQQEGAELSLFNKLGH-VEKVEILKGIEDMKDG 367
DKE ++ EYEK+ ++KR + ++++ + E L H + EI + KD
Sbjct: 124 DKEMTLEEYEKVLEEKRKALQALKTEVRKVDAKEFESMQPLSHKKDNDEIFAKLGSDKDK 303
Query: 368 LRTFLESADSSK 379
R +E S K
Sbjct: 304 RRDAIEKEKSKK 339
>AW720417
Length = 554
Score = 27.7 bits (60), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Frame = -1
Query: 79 CGNSKFGEFYCKIF-PSKDIENVENSYNHNF 108
CGN+K F C IF PSK++ +++ N F
Sbjct: 530 CGNTKRSSFACSIFCPSKNVTTSKSNRNAFF 438
>TC8670 weakly similar to UP|Q9ZRD1 (Q9ZRD1) NTGP4 (Fragment), partial
(71%)
Length = 1252
Score = 27.3 bits (59), Expect = 4.6
Identities = 14/39 (35%), Positives = 26/39 (65%)
Frame = +2
Query: 299 KNCLEYYHQKRIAFLLDKEDSIVEYEKMAKQKREEKLQQ 337
K +E ++Q+R L +E I+EY K AKQ+ +++L++
Sbjct: 716 KGAMELHNQQRQVNLQGQE--ILEYRKQAKQEYDDQLKR 826
>TC19107 similar to UP|Q94JT2 (Q94JT2) AT5g17630/K10A8_110, partial (19%)
Length = 645
Score = 26.6 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 223 YNSPKIDVAQASVGSESISNRAGLPPGGSCNSSTCTEGASLHVNCLL 269
Y+SPK + + +I AGL P G ++S GA+L + CL+
Sbjct: 455 YHSPKTRASLRFLDFGTIGAAAGLSPSGLASAS----GAALTIWCLI 327
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 26.6 bits (57), Expect = 7.9
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Frame = +2
Query: 208 TPSTCGFEKPLGDTSYNSP-KIDVAQASVGSESISNRAGLPPGGSC 252
+P++ PLG +S ++P K AS GS S++N + L P G C
Sbjct: 308 SPASPPTSSPLGPSSSSAPSKASSVTASSGS-SLANSSTLSPTGRC 442
>AW719373
Length = 566
Score = 26.6 bits (57), Expect = 7.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 297 KCKNCLEYYHQKRIAFLLDKEDSIV 321
+C NCL+ +H + L+D+ SI+
Sbjct: 373 ECGNCLDMFHAFLVICLIDRRHSII 299
>TC18629
Length = 454
Score = 26.6 bits (57), Expect = 7.9
Identities = 13/45 (28%), Positives = 18/45 (39%)
Frame = -2
Query: 206 EDTPSTCGFEKPLGDTSYNSPKIDVAQASVGSESISNRAGLPPGG 250
+ TPS C +K GD + E ++ GLP GG
Sbjct: 414 KSTPSECSEQKSGGDAGEGQAGDQKGRTHEEDEEVAQHRGLPRGG 280
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,576,486
Number of Sequences: 28460
Number of extensions: 150047
Number of successful extensions: 733
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of query: 401
length of database: 4,897,600
effective HSP length: 92
effective length of query: 309
effective length of database: 2,279,280
effective search space: 704297520
effective search space used: 704297520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC142526.10