TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142498.2 + phase: 0 /pseudo
         (193 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization ...   234  7e-63
BP063686                                                               91  1e-19
TC11674 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D...    91  2e-19
BP083473                                                               89  5e-19
TC19162                                                                89  5e-19
BP065247                                                               64  2e-11
TC18011                                                                61  1e-10
TC14620                                                                56  5e-09
TC11192 similar to GB|AAO63323.1|28950799|BT005259 At2g03430 {Ar...    32  0.071
AV415475                                                               31  0.16
AV428287                                                               31  0.16
BI417326                                                               26  5.1

>TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization 1 homolog a
           {Mus musculus;}, partial (3%)
          Length = 2631

 Score =  234 bits (597), Expect = 7e-63
 Identities = 126/222 (56%), Positives = 150/222 (66%), Gaps = 38/222 (17%)
 Frame = +2

Query: 8   STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
           S LLELSA +D EA KREV+EKG DVNEAGFWY R+IGSKKM  EKRTPLMIASLFGS R
Sbjct: 188 SILLELSASNDFEALKREVDEKGLDVNEAGFWYGRRIGSKKMGSEKRTPLMIASLFGSTR 367

Query: 68  VVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLDEVVRQK 127
           VVKY++ET  V+VN A GS+  TALHCAVAGGS+   E+VK+LLDAG+D D LD    + 
Sbjct: 368 VVKYLVETGRVDVNKACGSDKATALHCAVAGGSELSLEVVKVLLDAGSDADSLDACGNKP 547

Query: 128 LSV------ANSK------ELVAEKKDSG--------------------------YAIDT 149
           +++      ++SK      EL+    +SG                          Y +D 
Sbjct: 548 MNLIAPAFNSSSKSRRKAMELLLRGGESGQLIHQEMDLELISAPFSSKEGSDKKEYPVDV 727

Query: 150 SLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
           SLPDINNG++ +DEFRMYSFKVK CSR Y+HDWTECPFVHPG
Sbjct: 728 SLPDINNGLYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPG 853


>BP063686 
          Length = 514

 Score = 91.3 bits (225), Expect = 1e-19
 Identities = 39/55 (70%), Positives = 46/55 (82%)
 Frame = -2

Query: 137 VAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
           V+EKK+  Y +D SLPDI N ++ TDEFRMYSFKV+ CSR Y+HDWTECPFVHPG
Sbjct: 417 VSEKKE--YPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPG 259


>TC11674 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
           {Arabidopsis thaliana;}, partial (14%)
          Length = 570

 Score = 90.5 bits (223), Expect = 2e-19
 Identities = 45/100 (45%), Positives = 63/100 (63%)
 Frame = +3

Query: 8   STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
           S+LLEL++ +D E FK  + +    +NE G WY R+ GSK++  E RTPLM+A+ +GSI 
Sbjct: 270 SSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLEHRTPLMVAATYGSID 449

Query: 68  VVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIV 107
           V+K I+     +VN A G    TALHCA +GGS    + V
Sbjct: 450 VLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDAV 569


>BP083473 
          Length = 214

 Score = 89.0 bits (219), Expect = 5e-19
 Identities = 41/67 (61%), Positives = 49/67 (72%)
 Frame = -3

Query: 124 VRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWT 183
           V  ++ V     L AEKK+  Y ID SLPDI N ++ TDEFRM+SFKV+ CSR Y+HDWT
Sbjct: 197 VAVEVQVMQLSILHAEKKE--YPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWT 24

Query: 184 ECPFVHP 190
           ECPFVHP
Sbjct: 23  ECPFVHP 3


>TC19162 
          Length = 438

 Score = 89.0 bits (219), Expect = 5e-19
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +2

Query: 8   STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
           S LLE SA DD+  FK  VE++ +DV+EAG WY R++GS K+ YE+RTPLM+A++FGS+ 
Sbjct: 191 SALLEFSAADDLIGFKDAVEKEDHDVDEAGLWYGRRVGSNKLGYEERTPLMVAAMFGSLG 370

Query: 68  VVKYIIETNMVNVNMAIGSE 87
           V  YI+ T  V+VN A  S+
Sbjct: 371 VSIYILGTGRVDVNRASRSD 430


>BP065247 
          Length = 528

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 30/58 (51%), Positives = 43/58 (73%)
 Frame = +3

Query: 8   STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGS 65
           ++LLEL+A +D+E FKR +E     V+E G WY R+ GSK+M  E+RTPLM+A+ +GS
Sbjct: 354 ASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGS 527


>TC18011 
          Length = 542

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 27/59 (45%), Positives = 34/59 (56%)
 Frame = +3

Query: 133 SKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
           S E+ AE        D+  P      +  D FRMY FKV+ C+RG +HDWTECP+ HPG
Sbjct: 207 SNEVDAESDSDALGRDSDAPV---DAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPG 374


>TC14620 
          Length = 1260

 Score = 55.8 bits (133), Expect = 5e-09
 Identities = 20/31 (64%), Positives = 23/31 (73%)
 Frame = +3

Query: 161 TDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
           TD FRM+ FKV  C RG  HDWT+CP+ HPG
Sbjct: 165 TDHFRMFDFKVNLCQRGRPHDWTDCPYAHPG 257


>TC11192 similar to GB|AAO63323.1|28950799|BT005259 At2g03430 {Arabidopsis
           thaliana;}, partial (70%)
          Length = 597

 Score = 32.0 bits (71), Expect = 0.071
 Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
 Frame = +3

Query: 52  EKRTPLMIASLFGSIRVVKYIIETNM-VNVNMAIGSENVTALHCAVAGGSKSKFEIVKLL 110
           + R+ L +A+  G  +VVK ++  +   +V  +   E    LH A + G+    EIV+ L
Sbjct: 183 DARSLLHVAASSGHSQVVKILLSADASASVVNSADDEGWAPLHSAASIGN---LEIVEAL 353

Query: 111 LDAGADVDFLDEVVRQKLSVANSK 134
           L  GADV+  +   R  L  A SK
Sbjct: 354 LSKGADVNLKNGGGRTALHYAASK 425


>AV415475 
          Length = 427

 Score = 30.8 bits (68), Expect = 0.16
 Identities = 13/24 (54%), Positives = 18/24 (74%)
 Frame = +2

Query: 51  YEKRTPLMIASLFGSIRVVKYIIE 74
           Y+KRTPL +ASL G + V K ++E
Sbjct: 176 YDKRTPLHVASLHGWLAVAKCLVE 247


>AV428287 
          Length = 286

 Score = 30.8 bits (68), Expect = 0.16
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 158 VFVTDEFRMYSFKVKTCSRG 177
           V+  D+FRM+ FKV+ C+RG
Sbjct: 220 VYSFDQFRMFEFKVRNCARG 279


>BI417326 
          Length = 478

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 15/32 (46%), Positives = 18/32 (55%)
 Frame = +2

Query: 90  TALHCAVAGGSKSKFEIVKLLLDAGADVDFLD 121
           TALH A       + ++V LLL  GADVD  D
Sbjct: 275 TALHVAAC---HRRTDVVDLLLQRGADVDTQD 361


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,856,090
Number of Sequences: 28460
Number of extensions: 29876
Number of successful extensions: 164
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of query: 193
length of database: 4,897,600
effective HSP length: 85
effective length of query: 108
effective length of database: 2,478,500
effective search space: 267678000
effective search space used: 267678000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)