BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142394.6 - phase: 0
(513 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038344 91 5e-19
TC10816 homologue to UP|CAE45585 (CAE45585) Coatomer alpha subun... 82 2e-16
TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-bi... 82 3e-16
TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory pro... 79 1e-15
TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snR... 72 2e-13
TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG... 67 7e-12
TC16695 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-intera... 61 5e-10
BP050721 57 9e-09
BP077669 54 8e-08
AV407645 53 1e-07
BP066564 42 4e-06
TC9407 weakly similar to UP|TAF5_YEAST (P38129) Transcription in... 47 7e-06
TC14937 similar to UP|Q9FN19 (Q9FN19) Genomic DNA, chromosome 5,... 46 2e-05
TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial... 44 5e-05
TC9693 similar to UP|COPP_MOUSE (O55029) Coatomer beta' subunit ... 43 1e-04
TC18293 similar to UP|PWP1_HUMAN (Q13610) Periodic tryptophan pr... 43 1e-04
AV780136 42 2e-04
TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Ar... 42 2e-04
AV413963 42 3e-04
TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragm... 42 3e-04
>BP038344
Length = 525
Score = 90.9 bits (224), Expect = 5e-19
Identities = 48/133 (36%), Positives = 69/133 (51%)
Frame = +2
Query: 254 YQAEETFMMHDEPVLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSV 313
Y+ +T HD V CV FS D ++AS S D + +W T L RL HS+G++ +
Sbjct: 68 YRHLKTLTAHDAAVACVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLT-GHSEGISDL 244
Query: 314 SFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTV 373
++S D + S S D T RI G +K RGHT V F +++ S D TV
Sbjct: 245 AWSSDSHYICSASDDRTLRIWDATGGDCVKTLRGHTHAVFCVNFNPQSNYIVSGSFDETV 424
Query: 374 KVWDLKTTDCLQT 386
+VW++KT C+ T
Sbjct: 425 RVWEVKTGRCIHT 463
Score = 73.2 bits (178), Expect = 1e-13
Identities = 43/146 (29%), Positives = 68/146 (46%)
Frame = +2
Query: 219 CARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEM 278
C +FS DG L S S+D + +W + L L H E + + +S DS
Sbjct: 113 CVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLTG--------HSEGISDLAWSSDSHY 268
Query: 279 IASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKS 338
I S S D +++W C++ L H+ V V+F+ + ++S SFD T R+ +K+
Sbjct: 269 ICSASDDRTLRIWDATGGDCVKTLR-GHTHAVFCVNFNPQSNYIVSGSFDETVRVWEVKT 445
Query: 339 GKMLKEFRGHTSYVNDATFTNDGTRV 364
G+ + HT V F DGT +
Sbjct: 446 GRCIHTIIAHTMPVTSVHFNRDGTLI 523
Score = 59.7 bits (143), Expect = 1e-09
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = +2
Query: 305 AHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRV 364
AH V V FS DG+ L S S D T I + +L GH+ ++D +++D +
Sbjct: 92 AHDAAVACVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLTGHSEGISDLAWSSDSHYI 271
Query: 365 ITASSDCTVKVWDLKTTDCLQTFK 388
+AS D T+++WD DC++T +
Sbjct: 272 CSASDDRTLRIWDATGGDCVKTLR 343
Score = 33.9 bits (76), Expect = 0.065
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 3/157 (1%)
Frame = +2
Query: 337 KSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTFKPPPPLRGG 396
K + LK H + V F+NDGT + +AS D T+ +W T L G
Sbjct: 62 KPYRHLKTLTAHDAAVACVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLT-------G 220
Query: 397 DASVNSVFIFPKNTEHIVVCNKTSSIYIM-TLQGQVVKSFSSGKREGGDFVAACI--SPK 453
+ S + ++ +I + ++ I G VK+ G C+ +P+
Sbjct: 221 HSEGISDLAWSSDSHYICSASDDRTLRIWDATGGDCVKTL-----RGHTHAVFCVNFNPQ 385
Query: 454 GEWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGV 490
+I D + + ++G+ H + H + V
Sbjct: 386 SNYIVSGSFDETVRVWEVKTGRCIHTIIAHTMPVTSV 496
Score = 30.8 bits (68), Expect = 0.55
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 444 DFVAACI--SPKGEWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVAT 501
D AC+ S G + D+ + +S + L H +T H + I + + + +
Sbjct: 98 DAAVACVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLTGHSEGISDLAWSSDSHYICS 277
Query: 502 FSDDHTMKLW 511
SDD T+++W
Sbjct: 278 ASDDRTLRIW 307
>TC10816 homologue to UP|CAE45585 (CAE45585) Coatomer alpha subunit-like
protein, partial (20%)
Length = 979
Score = 82.4 bits (202), Expect = 2e-16
Identities = 56/170 (32%), Positives = 79/170 (45%), Gaps = 1/170 (0%)
Frame = +1
Query: 210 KFGAKSH-AECARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVL 268
KF KS+ + F P ++++ G I++WDY G L + F HD PV
Sbjct: 250 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLI--------DKFDEHDGPVR 405
Query: 269 CVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFD 328
V F + SG D KIKVW + +CL L H + +V F + ++S S D
Sbjct: 406 GVHFHHSQPLFVSGGDDYKIKVWNYKLHRCLFTLL-GHLDYIRTVQFHHESPWIVSASDD 582
Query: 329 STARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDL 378
T RI +S + GH YV A F V++AS D TV+VWD+
Sbjct: 583 QTIRIWNWQSRTCISVLTGHNHYVMCALFHPREDLVVSASLDQTVRVWDI 732
Score = 53.9 bits (128), Expect = 6e-08
Identities = 49/227 (21%), Positives = 93/227 (40%)
Frame = +1
Query: 286 GKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEF 345
G I++W R + + + H V V F +S D ++ K + L
Sbjct: 331 GVIQLWDYRMGTLIDKFDE-HDGPVRGVHFHHSQPLFVSGGDDYKIKVWNYKLHRCLFTL 507
Query: 346 RGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTFKPPPPLRGGDASVNSVFI 405
GH Y+ F ++ +++AS D T+++W+ ++ C+ L G + V
Sbjct: 508 LGHLDYIRTVQFHHESPWIVSASDDQTIRIWNWQSRTCISV------LTGHNHYVMCALF 669
Query: 406 FPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRN 465
P+ E +VV S+ T++ V S KR+ SP + + N
Sbjct: 670 HPR--EDLVV----SASLDQTVR---VWDIGSLKRKNA-------SPADDILRL--SQMN 795
Query: 466 MYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSDDHTMKLWK 512
F +++++ HD+ + + HP L+ + +DD +KLW+
Sbjct: 796 TDLFGGVDAVVKYVLEGHDRGVNWASFHPALPLIVSAADDRQVKLWR 936
Score = 42.0 bits (97), Expect = 2e-04
Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 3/178 (1%)
Frame = +1
Query: 337 KSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTF-KPPPPLRG 395
+S KML +F ++ V +F ++ + +++WD + + F + P+RG
Sbjct: 229 QSKKMLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDKFDEHDGPVRG 408
Query: 396 GDASVNS-VFIFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC-ISPK 453
+ +F+ + I V N + TL G + D++ +
Sbjct: 409 VHFHHSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHL------------DYIRTVQFHHE 552
Query: 454 GEWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSDDHTMKLW 511
WI +D+ + +++QS ++T H+ ++ HP +LV + S D T+++W
Sbjct: 553 SPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPREDLVVSASLDQTVRVW 726
>TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1379
Score = 81.6 bits (200), Expect = 3e-16
Identities = 52/160 (32%), Positives = 79/160 (48%), Gaps = 4/160 (2%)
Frame = +3
Query: 223 SPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIASG 282
S DGQ+ +S S DG + +WD +G + F+ H + VL V FS D+ I S
Sbjct: 285 SSDGQFALSGSWDGELRLWDLAAGT--------SARRFVGHTKDVLSVAFSIDNRQIVSA 440
Query: 283 STDGKIKVWRIRTAQCLRRLEH--AHSQGVTSVSFSRDGSQ--LLSTSFDSTARIHGLKS 338
S D IK+W +C ++ AHS V+ V FS Q ++S S+D T ++ L +
Sbjct: 441 SRDRTIKLWNT-LGECKYTIQDNDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTN 617
Query: 339 GKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDL 378
K+ GH+ YVN + DG+ + D + +WDL
Sbjct: 618 CKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDL 737
Score = 63.9 bits (154), Expect = 6e-11
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +3
Query: 259 TFMMHDEPVLCVDFSRD-SEMIASGSTDGKIKVWRI----RTAQCLRRLEHAHSQGVTSV 313
T H + V + D S+MI + S D I +W + +T RR HS V V
Sbjct: 99 TMRAHTDQVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDV 278
Query: 314 SFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTV 373
S DG LS S+D R+ L +G + F GHT V F+ D ++++AS D T+
Sbjct: 279 VLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTI 458
Query: 374 KVWD 377
K+W+
Sbjct: 459 KLWN 470
Score = 45.4 bits (106), Expect = 2e-05
Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 8/221 (3%)
Frame = +3
Query: 299 LRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARI--HGLKSGKML----KEFRGHTSYV 352
LR AH+ VT+++ D S ++ T+ + I H K K + GH+ +V
Sbjct: 90 LRGTMRAHTDQVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFV 269
Query: 353 NDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTFKPPPPLRGGDASVNSVFIFPKNTEH 412
D ++DG ++ S D +++WDL + F G V SV F +
Sbjct: 270 QDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFV------GHTKDVLSV-AFSIDNRQ 428
Query: 413 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACISPK--GEWIYCVGEDRNMYCFS 470
IV ++ +I + G+ + SP I DR + ++
Sbjct: 429 IVSASRDRTIKLWNTLGECKYTIQDNDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 608
Query: 471 YQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSDDHTMKLW 511
+ KL + + H + V P +L A+ D + LW
Sbjct: 609 LTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLW 731
Score = 44.3 bits (103), Expect = 5e-05
Identities = 42/177 (23%), Positives = 79/177 (43%), Gaps = 19/177 (10%)
Frame = +3
Query: 219 CARFSPDGQY--LVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDS 276
C RFSP +VS S D ++VW+ + KL+ T H V V S D
Sbjct: 531 CVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRN--------TLAGHSGYVNTVAVSPDG 686
Query: 277 EMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGL 336
+ ASG DG I +W + + L L+ + ++ FS + L + + +++ +I L
Sbjct: 687 SLCASGGKDGVILLWDLAEGKRLYSLDAGSI--IHALCFSPNRYWLCAAT-ETSIKIWDL 857
Query: 337 KSGKMLKEFR------------GHTS-----YVNDATFTNDGTRVITASSDCTVKVW 376
+S ++++ + G+T+ Y ++ DG+ + + +D ++VW
Sbjct: 858 ESKSIVEDLKVDLKTEADATTGGNTNKKKVIYCTSLNWSADGSTLFSGYTDGVIRVW 1028
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/96 (31%), Positives = 51/96 (52%), Gaps = 9/96 (9%)
Frame = +3
Query: 207 HTIKFGAKSHAECARFSPDGQYLVSCSIDGFIEVWDYISGK----LKKDLQYQAEETF-- 260
+++ G+ HA C FSP+ +Y + + + I++WD S LK DL+ +A+ T
Sbjct: 756 YSLDAGSIIHALC--FSPN-RYWLCAATETSIKIWDLESKSIVEDLKVDLKTEADATTGG 926
Query: 261 -MMHDEPVLC--VDFSRDSEMIASGSTDGKIKVWRI 293
+ + C +++S D + SG TDG I+VW I
Sbjct: 927 NTNKKKVIYCTSLNWSADGSTLFSGYTDGVIRVWAI 1034
Score = 35.8 bits (81), Expect = 0.017
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Frame = +3
Query: 212 GAKSHAECARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVD 271
G + SPDG S DG I +WD GK Y + ++H LC
Sbjct: 642 GHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK----RLYSLDAGSIIH---ALC-- 794
Query: 272 FSRDSEMIASGSTDGKIKVWRIRTAQCLRRLE-------HAHSQG---------VTSVSF 315
FS + + + +T+ IK+W + + + L+ A + G TS+++
Sbjct: 795 FSPNRYWLCA-ATETSIKIWDLESKSIVEDLKVDLKTEADATTGGNTNKKKVIYCTSLNW 971
Query: 316 SRDGSQLLSTSFDSTARI 333
S DGS L S D R+
Sbjct: 972 SADGSTLFSGYTDGVIRV 1025
>TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
homolog - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (51%)
Length = 770
Score = 79.3 bits (194), Expect = 1e-15
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Frame = +3
Query: 263 HDEPVLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQL 322
H +PV VDF+RD +I S S DG ++W T C++ L + V+ V FS + +
Sbjct: 36 HSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNAKFI 215
Query: 323 LSTSFDSTARIHGLKSGKMLKEFRGH--TSYVNDATF-TNDGTRVITASSDCTVKVWDLK 379
L + D+ R+ +G+ LK + GH + Y +TF T +G V+ S D + +W+L+
Sbjct: 216 LVGTLDNNLRLWNYSTGRFLKTYTGHVNSKYCISSTFSTTNGKYVVGGSEDHGIYLWELQ 395
Query: 380 TTDCLQTFKPPPPLRGGDASVNSVFIFPKNTEHIV 414
T +Q L G +V SV P TE+++
Sbjct: 396 TRKIVQ------KLEGHSDTVVSVSCHP--TENMI 476
Score = 70.9 bits (172), Expect = 5e-13
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Frame = +3
Query: 337 KSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTF--KPPPPLR 394
KSGK LK H+ V F DG+ ++++S D ++WD T C++T PP+
Sbjct: 3 KSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGHCMKTLIDDENPPVS 182
Query: 395 GGDASVNSVFIFPKNTE-HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACIS-- 451
S N+ FI + ++ + N ++ ++ T G V + CIS
Sbjct: 183 FVKFSPNAKFILVGTLDNNLRLWNYSTGRFLKTYTGHVNSKY-------------CISST 323
Query: 452 ---PKGEWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVAT--FSDDH 506
G+++ ED +Y + Q+ K+ + H ++ V+ HP N++A+ +D
Sbjct: 324 FSTTNGKYVVGGSEDHGIYLWELQTRKIVQKLEGHSDTVVSVSCHPTENMIASGALGNDK 503
Query: 507 TMKLW 511
T+K+W
Sbjct: 504 TVKIW 518
Score = 45.4 bits (106), Expect = 2e-05
Identities = 29/118 (24%), Positives = 59/118 (49%), Gaps = 5/118 (4%)
Frame = +3
Query: 221 RFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVD---FSRDSE 277
+FSP+ ++++ ++D + +W+Y +G+ K T+ H C+ + + +
Sbjct: 189 KFSPNAKFILVGTLDNNLRLWNYSTGRFLK--------TYTGHVNSKYCISSTFSTTNGK 344
Query: 278 MIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSF--DSTARI 333
+ GS D I +W ++T + +++LE HS V SVS + + S + D T +I
Sbjct: 345 YVVGGSEDHGIYLWELQTRKIVQKLE-GHSDTVVSVSCHPTENMIASGALGNDKTVKI 515
>TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snRNP-specific
40 kDa protein (hPrp8-binding) {Homo sapiens;} , partial
(43%)
Length = 719
Score = 72.0 bits (175), Expect = 2e-13
Identities = 39/126 (30%), Positives = 66/126 (51%), Gaps = 1/126 (0%)
Frame = +1
Query: 263 HDEPVLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQL 322
H + + F+ +IASGS D +I +W + + H V + ++ DG+Q+
Sbjct: 301 HQSVIYTMKFNPAGTVIASGSHDREIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGTQI 480
Query: 323 LSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDG-TRVITASSDCTVKVWDLKTT 381
+S S D T R+ +++GK +K+ H SYVN + G V++ S D T K+WD++
Sbjct: 481 VSASPDKTVRVWDVETGKQVKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 660
Query: 382 DCLQTF 387
+QTF
Sbjct: 661 GSIQTF 678
>TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
{Arabidopsis thaliana;} , partial (24%)
Length = 1048
Score = 67.0 bits (162), Expect = 7e-12
Identities = 63/296 (21%), Positives = 122/296 (40%), Gaps = 2/296 (0%)
Frame = +3
Query: 219 CARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEM 278
C FS DG+ L S D + +W+ + Q E T H + V F +S
Sbjct: 9 CCHFSSDGKMLASAGDDKKVVLWNMDT--------LQTESTPEQHKSVISDVRFRPNSSQ 164
Query: 279 IASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLS-TSFDSTARIHGLK 337
+A+ S D +++W + + HS + S+ F + + + R +
Sbjct: 165 LATASIDKSVRLWDAANPTYCVQEYNGHSSAIMSLDFHPKKTDIFCFCDSANEIRYWNIT 344
Query: 338 SGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTFK-PPPPLRGG 396
S + +G +S V F +V++A+SD V ++D+++ + T + P P+
Sbjct: 345 SSSCTRVSKGGSSQVR---FQPRIGQVLSAASD*VVSIFDVESDRQIYTLQGHPEPVNSI 515
Query: 397 DASVNSVFIFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACISPKGEW 456
VN F+ + + + + TS G+ ++ SS G F + P
Sbjct: 516 CWDVNGDFLASVSPNLVKIWSLTS--------GECIQELSS---SGNQFYSCVFHPSYST 662
Query: 457 IYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSDDHTMKLWK 512
+ +G ++ ++ K ++ H+ I + P +VA+ S D+++KLWK
Sbjct: 663 LLVIGGFSSLELWNMADNK-SMTISAHESVISALAQSPVTGMVASASHDNSVKLWK 827
Score = 48.9 bits (115), Expect = 2e-06
Identities = 42/203 (20%), Positives = 82/203 (39%), Gaps = 1/203 (0%)
Frame = +3
Query: 310 VTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASS 369
VT FS DG L S D + + + + H S ++D F + +++ TAS
Sbjct: 3 VTCCHFSSDGKMLASAGDDKKVVLWNMDTLQTESTPEQHKSVISDVRFRPNSSQLATASI 182
Query: 370 DCTVKVWD-LKTTDCLQTFKPPPPLRGGDASVNSVFIFPKNTEHIVVCNKTSSIYIMTLQ 428
D +V++WD T C+Q + G +++ S+ PK T+ C+ + I +
Sbjct: 183 DKSVRLWDAANPTYCVQEY------NGHSSAIMSLDFHPKKTDIFCFCDSANEIRYWNIT 344
Query: 429 GQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEII 488
S G F P+ + D + F +S + + + H + +
Sbjct: 345 SSSCTRVSKGGSSQVRF-----QPRIGQVLSAASD*VVSIFDVESDRQIYTLQGHPEPVN 509
Query: 489 GVTHHPHRNLVATFSDDHTMKLW 511
+ + + +A+ S + +K+W
Sbjct: 510 SICWDVNGDFLASVS-PNLVKIW 575
>TC16695 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
protein 1, partial (46%)
Length = 531
Score = 60.8 bits (146), Expect = 5e-10
Identities = 39/136 (28%), Positives = 64/136 (46%)
Frame = +3
Query: 294 RTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVN 353
RT L H + +T + ++RDG L S + D + +G+ L +RGH V
Sbjct: 66 RTTTMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVW 245
Query: 354 DATFTNDGTRVITASSDCTVKVWDLKTTDCLQTFKPPPPLRGGDASVNSVFIFPKNTEHI 413
+ D +R+IT S+D T K+W+++T L TF P R D SV + +
Sbjct: 246 CCDVSRDSSRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDLSVGDKLVVITTDPFM 425
Query: 414 VVCNKTSSIYIMTLQG 429
+ TS+I++ + G
Sbjct: 426 EL---TSAIHVKRIAG 464
Score = 46.6 bits (109), Expect = 1e-05
Identities = 35/122 (28%), Positives = 50/122 (40%)
Frame = +3
Query: 221 RFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIA 280
+++ DG L SC+ D VW +G + T+ H+ V C D SRDS +
Sbjct: 126 KYNRDGDLLFSCAKDHNPTVWFADNG--------ERLGTYRGHNGAVWCCDVSRDSSRLI 281
Query: 281 SGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGK 340
+GS D K+W ++T G QL + +FDS AR L G
Sbjct: 282 TGSADQTAKLWNVQT-----------------------GQQLFTFNFDSPARSVDLSVGD 392
Query: 341 ML 342
L
Sbjct: 393 KL 398
>BP050721
Length = 562
Score = 56.6 bits (135), Expect = 9e-09
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = -1
Query: 300 RRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHT--SYVNDATF 357
R + Q V +S S DG+ +L+ DST R+ SG++L+E++GHT SY D
Sbjct: 532 REISDNFGQPVNCISMSNDGNCILAGCLDSTVRLLDRTSGELLQEYKGHTNKSYKLDCCL 353
Query: 358 TNDGTRVITASSDCTVKVWDLKTTDCLQTFKPPPPLRGGDASVNSVFIFPK 408
TN V S D + WDL + +F R + V SV PK
Sbjct: 352 TNTDAHVAGGSEDGFIYFWDLVDAYVVSSF------RAHTSVVTSVSYHPK 218
Score = 43.1 bits (100), Expect = 1e-04
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = -1
Query: 265 EPVLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLE-HAHSQGVTSVSFSRDGSQLL 323
+PV C+ S D I +G D +++ + + L+ + H + + + +
Sbjct: 508 QPVNCISMSNDGNCILAGCLDSTVRLLDRTSGELLQEYKGHTNKSYKLDCCLTNTDAHVA 329
Query: 324 STSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVW 376
S D L ++ FR HTS V ++ +++AS D T++VW
Sbjct: 328 GGSEDGFIYFWDLVDAYVVSSFRAHTSVVTSVSYHPKENCMLSASVDGTIRVW 170
Score = 32.3 bits (72), Expect = 0.19
Identities = 33/183 (18%), Positives = 63/183 (34%)
Frame = -1
Query: 330 TARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQTFKP 389
T R ++ G+ + + G VN + +NDG ++ D TV++ D + + LQ +K
Sbjct: 562 TVRTFDIRIGREISDNFGQP--VNCISMSNDGNCILAGCLDSTVRLLDRTSGELLQEYK- 392
Query: 390 PPPLRGGDASVNSVFIFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC 449
G KS+ + C
Sbjct: 391 ---------------------------------------GHTNKSYK---------LDCC 356
Query: 450 ISPKGEWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSDDHTMK 509
++ + ED +Y + + H + V++HP N + + S D T++
Sbjct: 355 LTNTDAHVAGGSEDGFIYFWDLVDAYVVSSFRAHTSVVTSVSYHPKENCMLSASVDGTIR 176
Query: 510 LWK 512
+WK
Sbjct: 175 VWK 167
>BP077669
Length = 488
Score = 53.5 bits (127), Expect = 8e-08
Identities = 27/73 (36%), Positives = 43/73 (57%), Gaps = 1/73 (1%)
Frame = -2
Query: 320 SQLLSTSFDSTARIHGLKSG-KMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDL 378
+QL + S DST R+ L S ++ K GH +V D T+ +D + ++TASSD T K+WD
Sbjct: 280 TQLATCSSDSTVRLWDLTSQCRLQKTLNGHKKWVWDCTYNSDSSYLVTASSDLTAKLWDC 101
Query: 379 KTTDCLQTFKPPP 391
+ ++ +K P
Sbjct: 100 ARGEYIKEYKDMP 62
Score = 33.5 bits (75), Expect = 0.085
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -2
Query: 221 RFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIA 280
+ +P+ L +CS D + +WD S Q + ++T H + V ++ DS +
Sbjct: 298 KIAPNCTQLATCSSDSTVRLWDLTS-------QCRLQKTLNGHKKWVWDCTYNSDSSYLV 140
Query: 281 SGSTDGKIKVW 291
+ S+D K+W
Sbjct: 139 TASSDLTAKLW 107
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 1/61 (1%)
Frame = -2
Query: 324 STSFDSTARIHGLKSGKMLKEFRGHTS-YVNDATFTNDGTRVITASSDCTVKVWDLKTTD 382
ST+ + T I + +++ F H + Y+ + T++ T SSD TV++WDL T+
Sbjct: 397 STTNEQTCTITEDGAIRLIYNFNAHFNHYILKCKIAPNCTQLATCSSDSTVRLWDL-TSQ 221
Query: 383 C 383
C
Sbjct: 220 C 218
>AV407645
Length = 413
Score = 52.8 bits (125), Expect = 1e-07
Identities = 32/136 (23%), Positives = 67/136 (48%), Gaps = 1/136 (0%)
Frame = +2
Query: 263 HDEPVLCVDFSRDSEMIASGSTDGKIKVWRIR-TAQCLRRLEHAHSQGVTSVSFSRDGSQ 321
HD+ V V FS + + +AS S D +W + L+ H + +S+S+S + +
Sbjct: 5 HDDEVWLVQFSHNGKYLASASNDRTAIIWEVGINGLSLKHRLSGHQKAFSSISWSPNDQE 184
Query: 322 LLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTT 381
LL+ + R + +GK L+ + + + T+ G +++ SD ++ +W+L
Sbjct: 185 LLTCGVEEAIRRWDVSTGKCLQIYEKAGAGLISCTWFPSGKYILSGLSDKSICMWELDGK 364
Query: 382 DCLQTFKPPPPLRGGD 397
+ ++++K P L+ D
Sbjct: 365 E-VESWKGPKTLKISD 409
Score = 36.6 bits (83), Expect = 0.010
Identities = 30/128 (23%), Positives = 59/128 (45%), Gaps = 1/128 (0%)
Frame = +2
Query: 221 RFSPDGQYLVSCSIDGFIEVWDY-ISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMI 279
+FS +G+YL S S D +W+ I+G + H + + +S + + +
Sbjct: 29 QFSHNGKYLASASNDRTAIIWEVGING-------LSLKHRLSGHQKAFSSISWSPNDQEL 187
Query: 280 ASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSG 339
+ + I+ W + T +CL+ E A G+ S ++ G +LS D + + L G
Sbjct: 188 LTCGVEEAIRRWDVSTGKCLQIYEKA-GAGLISCTWFPSGKYILSGLSDKSICMWEL-DG 361
Query: 340 KMLKEFRG 347
K ++ ++G
Sbjct: 362 KEVESWKG 385
>BP066564
Length = 492
Score = 41.6 bits (96), Expect(2) = 4e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 340 KMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTTDCLQT 386
++L+E +GH V+ + G RV+TAS D TVK+WD++T C+ T
Sbjct: 223 QLLEELKGHDGPVSCVRMLS-GERVLTASHDGTVKMWDVRTDRCVAT 360
Score = 38.1 bits (87), Expect = 0.003
Identities = 23/88 (26%), Positives = 40/88 (45%)
Frame = +1
Query: 255 QAEETFMMHDEPVLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVS 314
Q E HD PV CV E + + S DG +K+W +RT +C+ + S V +
Sbjct: 223 QLLEELKGHDGPVSCVRML-SGERVLTASHDGTVKMWDVRTDRCVATVGRC-SSAVLCME 396
Query: 315 FSRDGSQLLSTSFDSTARIHGLKSGKML 342
+ + L + D A I +++ + +
Sbjct: 397 YDDNVGVLAAAGRDVVANIWDIRASRQM 480
Score = 32.3 bits (72), Expect = 0.19
Identities = 23/104 (22%), Positives = 45/104 (43%)
Frame = +1
Query: 199 DMYPTNLSHTIKFGAKSHAECARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEE 258
D T L +K G C R G+ +++ S DG +++WD + +
Sbjct: 208 DKQTTQLLEELK-GHDGPVSCVRML-SGERVLTASHDGTVKMWDVRTDR--------CVA 357
Query: 259 TFMMHDEPVLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRL 302
T VLC+++ + ++A+ D +W IR ++ + +L
Sbjct: 358 TVGRCSSAVLCMEYDDNVGVLAAAGRDVVANIWDIRASRQMHKL 489
Score = 25.8 bits (55), Expect(2) = 4e-06
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Frame = +3
Query: 275 DSEMIASGSTDGKIKVW--RIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTAR 332
D+ SGSTD +K+W +R ++ LR H++ + ++ S D +++S S D +
Sbjct: 33 DAGFFISGSTDCSVKIWDPSLRGSE-LRATLKGHTRTIRAI--SSDRGKVVSGSDDQSVL 203
Query: 333 I 333
+
Sbjct: 204 V 206
>TC9407 weakly similar to UP|TAF5_YEAST (P38129) Transcription initiation
factor TFIID subunit 5 (TBP-associated factor 5)
(TBP-associated factor 90 kDa) (TAFII-90), partial (4%)
Length = 530
Score = 47.0 bits (110), Expect = 7e-06
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +2
Query: 267 VLCVDFSRDSEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTS 326
+L +F +A+ S D +K+W + L + H + V FS DG+ L++ S
Sbjct: 23 LLSPEFCEPHRYLATASADHTVKIWNV-DGFTLDKTLIGHQRWVWDCVFSVDGAYLITAS 199
Query: 327 FDSTARIHGLKSGKMLKEFRGH 348
D+TAR+ + +G+ +K ++GH
Sbjct: 200 SDTTARLWSMSTGEDIKVYQGH 265
Score = 46.2 bits (108), Expect = 1e-05
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +2
Query: 312 SVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDC 371
S F L + S D T +I + + K GH +V D F+ DG +ITASSD
Sbjct: 29 SPEFCEPHRYLATASADHTVKIWNVDGFTLDKTLIGHQRWVWDCVFSVDGAYLITASSDT 208
Query: 372 TVKVWDLKTTDCLQTFK 388
T ++W + T + ++ ++
Sbjct: 209 TARLWSMSTGEDIKVYQ 259
>TC14937 similar to UP|Q9FN19 (Q9FN19) Genomic DNA, chromosome 5, TAC
clone:K8K14 (AT5g67320/K8K14_4), partial (19%)
Length = 1089
Score = 45.8 bits (107), Expect = 2e-05
Identities = 28/102 (27%), Positives = 51/102 (49%)
Frame = +1
Query: 229 LVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIASGSTDGKI 288
L S S D +++WD GKL L H + V V FS + E +ASGS D I
Sbjct: 55 LASASFDSTVKLWDVEVGKLIYSLNG--------HRDGVYSVAFSPNGEYLASGSPDKSI 210
Query: 289 KVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDST 330
+W ++ + ++ + S G+ V ++++G ++ + ++T
Sbjct: 211 HIWSLKEGKIVK--TYTGSGGIFEVCWNKEGDKIAACFANNT 330
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 322 LLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTT 381
L S SFDST ++ ++ GK++ GH V F+ +G + + S D ++ +W LK
Sbjct: 55 LASASFDSTVKLWDVEVGKLIYSLNGHRDGVYSVAFSPNGEYLASGSPDKSIHIWSLKEG 234
Query: 382 DCLQTF 387
++T+
Sbjct: 235 KIVKTY 252
Score = 32.0 bits (71), Expect = 0.25
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 222 FSPDGQYLVSCSIDGFIEVWDYISGKLKK 250
FSP+G+YL S S D I +W GK+ K
Sbjct: 160 FSPNGEYLASGSPDKSIHIWSLKEGKIVK 246
>TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial (60%)
Length = 453
Score = 44.3 bits (103), Expect = 5e-05
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 221 RFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSE-MI 279
RFSP L + S D ++VWD D + TF H V+ +DF + E +I
Sbjct: 107 RFSPSMPRLATSSFDKTVKVWDV-------DNPGYSLRTFTGHSASVMSLDFHPNKEDLI 265
Query: 280 ASGSTDGKIKVWRIRTAQCLR 300
S +DG+I+ W I C R
Sbjct: 266 CSCDSDGEIRYWSINNGSCAR 328
Score = 39.7 bits (91), Expect = 0.001
Identities = 33/118 (27%), Positives = 47/118 (38%), Gaps = 1/118 (0%)
Frame = +2
Query: 322 LLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLKTT 381
L S D A + S K H++ + D F+ R+ T+S D TVKVWD+
Sbjct: 5 LASGGHDKKAVLWYTDSLKQKATLEEHSALITDVRFSPSMPRLATSSFDKTVKVWDVDNP 184
Query: 382 D-CLQTFKPPPPLRGGDASVNSVFIFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSG 438
L+TF G ASV S+ P + I C+ I ++ S G
Sbjct: 185 GYSLRTF------TGHSASVMSLDFHPNKEDLICSCDSDGEIRYWSINNGSCARVSKG 340
>TC9693 similar to UP|COPP_MOUSE (O55029) Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102), partial (20%)
Length = 743
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Frame = +1
Query: 220 ARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMI 279
A+F Q++V+ + D FI V++Y + K F H + + CV +
Sbjct: 394 AKFIARKQWVVAGADDMFIRVYNYNTMDKVK--------VFEAHTDYIRCVAVHPTLPYV 549
Query: 280 ASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFS-RDGSQLLSTSFDSTARIHGLKS 338
S S D IK+W ++ AHS V V+F+ +D + S S D T RI L S
Sbjct: 550 LSSSDDMLIKLWDWEKGWICTQICEAHSHYVMQVTFNPKDTNTFASASLDRTIRIRNLGS 729
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 455 EWIYCVGEDRNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSDDHTMKLW 511
+W+ +D + ++Y + + H I V HP V + SDD +KLW
Sbjct: 415 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 585
>TC18293 similar to UP|PWP1_HUMAN (Q13610) Periodic tryptophan protein 1
homolog (Keratinocyte protein IEF SSP 9502), partial
(7%)
Length = 804
Score = 43.1 bits (100), Expect = 1e-04
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Frame = +2
Query: 226 GQYLVSCSIDGFIEVWDY----------ISGKLKKDLQYQAEETFMM------HDEPVLC 269
G +L S++ IE+WD + G ++K + +A + H + L
Sbjct: 206 GNFLAVGSMEPSIEIWDLDVLDEVQPCVVLGGIEKKKKGKAGTKKSIKYKDGSHTDSXLG 385
Query: 270 VDFSRD-SEMIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLST-SF 327
+ ++++ ++AS S D ++K+W + +C +EH H+ V +V+++ Q+L T SF
Sbjct: 386 LAWNKEYRNILASASADKRVKIWDVVAEKCDITMEH-HTDKVQAVAWNHFQPQVLLTGSF 562
Query: 328 DSTARIHGLKSGKMLKEFRGHTSYVND-----ATFTNDGTRVITASSDCTVKVWDLKT 380
D T LK G+M G+ VN A + + + D TVK +D++T
Sbjct: 563 DHTV---ALKDGRM-PSHSGYRWSVNSDVESLAWDPHTEHSFVVSLDDGTVKCFDIRT 724
>AV780136
Length = 558
Score = 42.0 bits (97), Expect = 2e-04
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = -1
Query: 312 SVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRVITASSDC 371
+++ + G+ L+S + R+ +SG + RGH + + G ++ SSD
Sbjct: 558 ALAMNEGGTVLVSGGTEKVIRVWDPRSGSKTLKLRGHADNIRALLLDSTGRYCLSGSSDS 379
Query: 372 TVKVWDLKTTDCLQTF 387
+++WD+ CL T+
Sbjct: 378 MIRLWDIGQPRCLHTY 331
Score = 31.6 bits (70), Expect = 0.32
Identities = 28/113 (24%), Positives = 48/113 (41%)
Frame = -1
Query: 226 GQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIASGSTD 285
G LVS + I VWD SG K L+ + H + + + SGS+D
Sbjct: 537 GTVLVSGGTEKVIRVWDPRSGS--KTLKLRG------HADNIRALLLDSTGRYCLSGSSD 382
Query: 286 GKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKS 338
I++W I +CL H+ V +++ + S + S D + + L++
Sbjct: 381 SMIRLWDIGQPRCLHTYA-VHTDSVWALASTPTFSHVYSGGRDFSLYLTDLQT 226
>TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
thaliana;}, partial (39%)
Length = 527
Score = 42.0 bits (97), Expect = 2e-04
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Frame = +1
Query: 306 HSQGVTSVSFSRDGSQLLST-SFDSTARIHGLKSGKMLKEFRGHTSYVNDATFTNDGTRV 364
H V S+ +S +LL T S D ++ + ++ GH S+V + DG +
Sbjct: 13 HFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALVGTMSGHASWVLCVDVSPDGGAI 192
Query: 365 ITASSDCTVKVWDLKTTDCLQT------------FKPP--PPLRGG 396
T SSD TV++WDL +QT F+PP +RGG
Sbjct: 193 ATGSSDRTVRLWDLAMRASVQTMSNHTDQVWGVAFRPPGGTDVRGG 330
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +1
Query: 222 FSP-DGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIA 280
+SP D + L + S DG + ++D GK T H VLCVD S D IA
Sbjct: 40 YSPYDPRLLFTASDDGNVHMYD-AEGKALVG-------TMSGHASWVLCVDVSPDGGAIA 195
Query: 281 SGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRD------GSQLLSTSFDSTARIH 334
+GS+D +++W + ++ + + H+ V V+F G +L S S D + ++
Sbjct: 196 TGSSDRTVRLWDLAMRASVQTMSN-HTDQVWGVAFRPPGGTDVRGGRLASVSDDKSISLY 372
>AV413963
Length = 313
Score = 41.6 bits (96), Expect = 3e-04
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Frame = +2
Query: 306 HSQGVTSVSFSRDGSQLLSTSFDSTARI-----HGLKSGKMLKEFRGHTSYVNDATFTND 360
H + V SV+++ G++L S S D TARI HG K + E +GHT V+ +
Sbjct: 74 HKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDI-ELKGHTDSVDQLCWDPK 250
Query: 361 GTRVI-TASSDCTVKVWDLKT 380
+I TAS D TV++WD ++
Sbjct: 251 HADLIATASGDKTVRLWDARS 313
Score = 28.1 bits (61), Expect = 3.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 343 KEFRGHTSYVNDATFTNDGTRVITASSDCTVKVWDLK 379
+E+ GH V+ + GT++ + S D T ++W ++
Sbjct: 59 REYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHVE 169
>TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragment),
partial (18%)
Length = 591
Score = 41.6 bits (96), Expect = 3e-04
Identities = 32/138 (23%), Positives = 57/138 (41%)
Frame = +1
Query: 223 SPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIASG 282
S DG + ++C+ I++ D + ++ LQ +E V + S D ++ S
Sbjct: 187 SSDGSF-IACACGESIKIVDSANASIRSTLQGDSES--------VTALALSPDDNLLFSS 339
Query: 283 STDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKML 342
+I+VW + T +C+R + H V +S G L + D + + G
Sbjct: 340 GHSRQIRVWDLSTLKCVRSWK-GHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCT 516
Query: 343 KEFRGHTSYVNDATFTND 360
F+GH V+ F D
Sbjct: 517 HFFKGHGGVVSCVMFHPD 570
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/90 (26%), Positives = 41/90 (44%)
Frame = +1
Query: 299 LRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDATFT 358
+R S+ VT+++ S D + L S+ R+ L + K ++ ++GH V +
Sbjct: 259 IRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCH 438
Query: 359 NDGTRVITASSDCTVKVWDLKTTDCLQTFK 388
G + T +D V VWD+ C FK
Sbjct: 439 PSGGLLATGGADRKVLVWDVDGGYCTHFFK 528
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/101 (26%), Positives = 42/101 (40%)
Frame = +1
Query: 223 SPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEPVLCVDFSRDSEMIASG 282
SPD L S I VWD + K + ++ H+ PV+C+ ++A+G
Sbjct: 310 SPDDNLLFSSGHSRQIRVWDLSTLKCVR--------SWKGHEGPVMCMSCHPSGGLLATG 465
Query: 283 STDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLL 323
D K+ VW + C + H V+ V F D + L
Sbjct: 466 GADRKVLVWDVDGGYCTHFFK-GHGGVVSCVMFHPDPEKQL 585
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,958,220
Number of Sequences: 28460
Number of extensions: 121518
Number of successful extensions: 833
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of query: 513
length of database: 4,897,600
effective HSP length: 94
effective length of query: 419
effective length of database: 2,222,360
effective search space: 931168840
effective search space used: 931168840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC142394.6