BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142222.7 + phase: 0
(555 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17852 similar to UP|Q8W4I8 (Q8W4I8) SCARECROW gene regulator, ... 232 1e-61
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 172 1e-43
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 160 4e-40
CN825078 108 2e-24
TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r... 103 6e-23
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 89 2e-18
AV419737 78 4e-15
BF177544 74 6e-14
AI967706 71 5e-13
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 70 7e-13
AV415616 60 7e-10
AV414168 58 4e-09
AV418844 56 1e-08
TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, pa... 50 7e-07
AV770800 50 1e-06
TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberell... 43 1e-04
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 43 1e-04
AV778595 42 3e-04
BP072816 40 0.001
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 40 0.001
>TC17852 similar to UP|Q8W4I8 (Q8W4I8) SCARECROW gene regulator, partial
(26%)
Length = 456
Score = 232 bits (592), Expect = 1e-61
Identities = 123/152 (80%), Positives = 131/152 (85%), Gaps = 6/152 (3%)
Frame = +2
Query: 388 LAVNFMLQLYNLLDENTNSVEKALRLAKSLNPKIVTLGEYEASLTTRVGFVERFETAFNY 447
LAVNFMLQLYNLLDE +VE ALRLAKSL P+IVTLGEYEASLT RVGFV RF+ A +
Sbjct: 2 LAVNFMLQLYNLLDETPTAVETALRLAKSLKPRIVTLGEYEASLT-RVGFVSRFKAALKH 178
Query: 448 FAAFFESLEPNMALDSPERFQVESLLLGRRIDGVIG------VRERMEDKEQWKVLMENC 501
F+A FESLEPN+ DSPERFQVESLLLGRRI GVIG VRERMEDKEQW+VLME+C
Sbjct: 179 FSALFESLEPNLPSDSPERFQVESLLLGRRIAGVIGPELPGCVRERMEDKEQWRVLMESC 358
Query: 502 GFESVGLSHYAISQAKILLWNYSYSSLYSLVE 533
GFESV LSHYAISQAKILLWNYSYSSLYSLVE
Sbjct: 359 GFESVSLSHYAISQAKILLWNYSYSSLYSLVE 454
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 172 bits (436), Expect = 1e-43
Identities = 117/348 (33%), Positives = 178/348 (50%), Gaps = 10/348 (2%)
Frame = +1
Query: 218 KSISQNGNPNQRVSFYFSQALTNKITAQSSIA--SSNSSSTTWEELTLSYKALNDACPYS 275
K +S G+P+QR+ Y + L ++ S+ + T +EL L CPY
Sbjct: 4 KMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQPTGKELMSYMHILYQICPYW 183
Query: 276 KFAHLTANQAILEATEGSNNIHIVDFGIVQGIQWAALLQAFATRSSGKPNSVRISGIPAM 335
KFA+++AN AI EA + IHI+DF I QG QW L+QA A R G P +RI+G+
Sbjct: 184 KFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPP-FIRITGVDDS 360
Query: 336 ALGTSPVSSISATGNRLSEFAKLLGLNFEFTPILTPIELLDESSFCIQPDEALAVNFMLQ 395
+ + G RLS+FA+ G+ FEF ++ + ++P EALAVNF
Sbjct: 361 QSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGCEVERENLGVRPGEALAVNFPYV 540
Query: 396 LYNLLDENT---NSVEKALRLAKSLNPKIVTLGEYEASLTTRVGFVERFETAFNYFAAFF 452
L+++ DE+ N ++ LRL KSL+PK+VTL E E++ T F RF Y+ A F
Sbjct: 541 LHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTS-PFFNRFMETLEYYTAMF 717
Query: 453 ESLEPNMALDSPERFQVESLLLGRRIDGVIGVR--ERMEDKE---QWKVLMENCGFESVG 507
ES++ D +R E + R I ++ ER+E E +WK+ GF+
Sbjct: 718 ESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKQWP 897
Query: 508 LSHYAISQAKILLWNYSYSSLYSLVESQPAFLSLAWKDVPLLTVSSWR 555
LS ++ + LL +++++ Y L E + L L W L+T S+WR
Sbjct: 898 LSSSVMTATQNLLRDFNHN--YRL-EQRDGALCLGWMKRALVTSSAWR 1032
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 160 bits (406), Expect = 4e-40
Identities = 101/294 (34%), Positives = 163/294 (55%), Gaps = 8/294 (2%)
Frame = +2
Query: 270 DACPYSKFAHLTANQAILEATEGSNNIHIVDFGIVQGIQWAALLQAFATRSSGKPNSVRI 329
+ CPY KFAH TANQAILEA +G + +H++DF I QG+QW AL+QA A R G P + R+
Sbjct: 2 ETCPYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGPP-AFRL 178
Query: 330 SGIPAMALGTSPVSSISATGNRLSEFAKLLGLNFEFTP-ILTPIELLDESSFCIQP--DE 386
+GI A S + G +L++ A+ + + FE+ + + LD S ++P +E
Sbjct: 179 TGIGPPAPDNS--DHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEE 352
Query: 387 ALAVNFMLQLYNLLDENTNSVEKALRLAKSLNPKIVTLGEYEASLTTRVGFVERFETAFN 446
++AVN + +L+ LL ++EK + + + P+I+T+ E EA F++RF + +
Sbjct: 353 SVAVNSVFELHKLL-ARPGALEKVFSVIRQVQPEILTVVEQEAG-HNGASFLDRFTESLH 526
Query: 447 YFAAFFESLEPNMALDSPERFQVESLLLGRRIDGVIGVR-----ERMEDKEQWKVLMENC 501
Y++A F+SLE + A++S ++ E + LG++I V+ ER E QW+ +
Sbjct: 527 YYSALFDSLEGSSAVESQDKAMTE-IYLGKQICNVVACEGSDRIERHETLTQWRTRFNSA 703
Query: 502 GFESVGLSHYAISQAKILLWNYSYSSLYSLVESQPAFLSLAWKDVPLLTVSSWR 555
G V L A QA +LL ++ Y VE L+L W PL+ S+W+
Sbjct: 704 GLSPVHLGSNAFKQASMLLALFAGGDGYR-VEENNGCLTLGWHTRPLIATSAWQ 862
>CN825078
Length = 650
Score = 108 bits (271), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%), Gaps = 4/191 (2%)
Frame = +3
Query: 219 SISQNGNPNQRVSFYFSQALT--NKITAQSSIASSNSSSTTWEELTLSYKALNDACPYSK 276
++S NG P QR+ Y + L + + S + N EEL + L + CPY K
Sbjct: 60 AVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALNCREPEGEELLSYMQLLFEICPYLK 239
Query: 277 FAHLTANQAILEATEGSNNIHIVDFGIVQGIQWAALLQAFATRSSGKPNSVRISGIPAMA 336
F ++ AN AI EA + IHI+DF I QG QW LLQA A R G P+ VRI+GI
Sbjct: 240 FGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPH-VRITGIDDPV 416
Query: 337 LGTSPVSSISATGNRLSEFAKLLGLNFEF--TPILTPIELLDESSFCIQPDEALAVNFML 394
+ + G RL+ ++ G+ EF P+ P D I+P EALAVNF L
Sbjct: 417 SKYARGDGLDIVGKRLALMSEKFGIPVEFHGVPVFGPDVTRD--MLDIRPGEALAVNFPL 590
Query: 395 QLYNLLDENTN 405
QL++ DE+ +
Sbjct: 591 QLHHTADESVD 623
>TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (33%)
Length = 556
Score = 103 bits (258), Expect = 6e-23
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 3/191 (1%)
Frame = +2
Query: 204 QKPNQAI-ETLT-HLNKSISQNGNPNQRVSFYFSQALTNKITAQSSIASSNSSSTTWEEL 261
QK N + +TL H+ + ++V+ YF+QAL +I I S+ + L
Sbjct: 5 QKENHKLADTLVKHIGVVAASQAGAMRKVASYFAQALARRIYG---IFPDTVDSSLHDVL 175
Query: 262 TLSYKALNDACPYSKFAHLTANQAILEATEGSNNIHIVDFGIVQGIQWAALLQAFATRSS 321
+ + ++CPY KFAH TANQAILEA + +H+VDFG+ QG+QW AL+QA A R
Sbjct: 176 HMHFY---ESCPYLKFAHFTANQAILEAFATAGRVHVVDFGLKQGMQWPALMQALALRPG 346
Query: 322 GKPNSVRISGIPAMALGTSPVSSISATGNRLSEFAKLLGLNFEFTP-ILTPIELLDESSF 380
G P + R++GI S ++ G +L++ A+ +G+ FEF + + LD +
Sbjct: 347 GPP-TFRLTGIGPPQPDNS--DALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNML 517
Query: 381 CIQPDEALAVN 391
I+P EA+AVN
Sbjct: 518 EIRPGEAVAVN 550
>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (49%)
Length = 1051
Score = 88.6 bits (218), Expect = 2e-18
Identities = 61/200 (30%), Positives = 104/200 (51%), Gaps = 8/200 (4%)
Frame = +3
Query: 312 LLQAFATRSSGKPNSVRISGIPAMALGTSPVSSISATGNRLSEFAKLLGLNFEFTPILTP 371
LL + R +GKP +V++ + + G+ L + A+ L + FEF +
Sbjct: 3 LLHELSARLAGKPVTVKVIAVAEDGAD----ERLKTVGDMLGQQAERLRIGFEFKVVSCK 170
Query: 372 IELLDESSFCIQPDEALAVNFMLQLYNLLDENT---NSVEKALRLAKSLNPKIVTLGEYE 428
+ L + +PDE LAVNF +L+ + DE+ N ++ LR K+L+P++VTL E E
Sbjct: 171 LAELTREALGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQE 350
Query: 429 ASLTTRVGFVERFETAFNYFAAFFESLEPNMALDSPERFQVESLLLGRRIDGVIGV--RE 486
+ T FV R + +Y++A F+S+E +A +S ER ++E L R++ + R+
Sbjct: 351 LN-TNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQ-GLSRKVGNSVACEGRD 524
Query: 487 RMEDKE---QWKVLMENCGF 503
R+E E +W+ M GF
Sbjct: 525 RVERCEVFGKWRARMSMAGF 584
>AV419737
Length = 410
Score = 77.8 bits (190), Expect = 4e-15
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Frame = +3
Query: 171 KNDNTTTETTSSFSSSTNPLLKTLTEIASLIETQKPNQAIETLTHLNKSISQNGNPNQRV 230
K D+T + + S + L + A LIE P A L LN +S NG P R
Sbjct: 6 KVDSTGDDVNNQLQQS---IFDQLYKTAELIEAGNPVHAQGILARLNHQLSPNGKPFHRA 176
Query: 231 SFYFSQALTNKITAQSSIASSNSSSTTWEELTL-----SYKALNDACPYSKFAHLTANQA 285
+FY +AL QS + S+ + T+ ++ +YK+ ++ P +FA+ T NQA
Sbjct: 177 AFYMKEAL------QSMLHSNGHNFLTFSPISFIFKIGAYKSFSEISPVLQFANFTCNQA 338
Query: 286 ILEATEGSNNIHIVDFGIVQGIQW 309
++EA E + IHI+DF I G+QW
Sbjct: 339 LIEAVERFDRIHIIDFDIGFGVQW 410
>BF177544
Length = 318
Score = 73.9 bits (180), Expect = 6e-14
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Frame = +3
Query: 374 LLDESSFCIQPDEALAVNFMLQLYNLLDENTNSV---EKALRLAKSLNPKIVTLGEYEAS 430
++ S +P EAL VNF QL+++ DE+ ++V ++ LRL KSLNPK+VT+ E + +
Sbjct: 18 IVTPSMLSCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVN 197
Query: 431 LTTRVGFVERFETAFNYFAAFFESLEPNMALDSPERFQVE 470
T F++RF A+ Y++A FESL+ + +S +R VE
Sbjct: 198 TNT-APFLQRFVEAYKYYSAVFESLDITLPRESQDRMNVE 314
>AI967706
Length = 357
Score = 70.9 bits (172), Expect = 5e-13
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Frame = +2
Query: 386 EALAVNFMLQLYNLLDENTNSV---EKALRLAKSLNPKIVTLGEYEASLTTRVGFVERFE 442
EAL VNF QL+++ DE+ ++V ++ LR+ KSLNPK+VT+ E + + T F+ RF
Sbjct: 38 EALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTS-PFLPRFI 214
Query: 443 TAFNYFAAFFESLEPNMALDSPERFQVESLLLGRRIDGVI 482
A+ Y++A F+SL+ + +S +R VE L R I ++
Sbjct: 215 IAYEYYSAVFDSLDATLPRESQDRVNVERQCLARDIVNIV 334
>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(27%)
Length = 711
Score = 70.5 bits (171), Expect = 7e-13
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Frame = +3
Query: 414 AKSLNPKIVTLGEYEASLTTRVGFVERFETAFNYFAAFFESLEPNMALDSPERFQVESLL 473
AK L+PK+VTL E E + T F++RF NY+ A FES++ + + ER VE
Sbjct: 3 AKCLSPKVVTLVEQEFN-TNNAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHC 179
Query: 474 LGRRIDGVIGVR-----ERMEDKEQWKVLMENCGFESVGLSHYAISQAKILLWNYSYSSL 528
L R + ++ ER E +W++ + GF L+ Y S K LL SY
Sbjct: 180 LAREVVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLL--ESYRGH 353
Query: 529 YSLVESQPAFLSLAWKDVPLLTVSSWR 555
Y+L E A L L W + L+ +WR
Sbjct: 354 YTLEERDGA-LFLGWMNQVLVASCAWR 431
>AV415616
Length = 316
Score = 60.5 bits (145), Expect = 7e-10
Identities = 39/106 (36%), Positives = 58/106 (53%), Gaps = 9/106 (8%)
Frame = +2
Query: 354 EFAKLLGLNFEFTPILTPIELLDESSFCIQPDEALAVNFMLQLYNLLDENT--------- 404
+ AK + FEF I T + I+P+EA+AVNF + L+++ DE+
Sbjct: 2 KIAKSCNVPFEFHAIGTSPSEVQLQDLEIRPEEAIAVNFAMMLHHVPDESVDTQNQGWSQ 181
Query: 405 NSVEKALRLAKSLNPKIVTLGEYEASLTTRVGFVERFETAFNYFAA 450
N + LRLAK L+PK+VTL E E++ T + F+ RF NY+ A
Sbjct: 182 NHRNRLLRLAKCLSPKVVTLVEQESN-TNNLPFLPRFVETMNYYLA 316
>AV414168
Length = 208
Score = 58.2 bits (139), Expect = 4e-09
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +1
Query: 276 KFAHLTANQAILEATEGSNNIHIVDFGIVQGIQWAALLQAFATRSSGKPNSVRISGI 332
KF +++AN AI EA + +HI+DF I QG QW +L+QA A R G P VRI+G+
Sbjct: 4 KFGYMSANGAIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPP-KVRITGV 171
>AV418844
Length = 284
Score = 56.2 bits (134), Expect = 1e-08
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +1
Query: 291 EGSNNIHIVDFGIVQGIQWAALLQAFATRSSGKPNSVRISGIPAMALGTSPVSSISATGN 350
+ +++HI+DFGI G QW L+++ + R G P +R++GI G P + TG
Sbjct: 1 KNESSVHIIDFGICYGFQWPCLIKSLSERHGGPPR-LRVTGIELPRPGFRPAERVEETGR 177
Query: 351 RLSEFAKLLGLNFEF 365
RL + K + FE+
Sbjct: 178 RLENYCKKFKVPFEY 222
>TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, partial (23%)
Length = 414
Score = 50.4 bits (119), Expect = 7e-07
Identities = 38/122 (31%), Positives = 61/122 (49%), Gaps = 9/122 (7%)
Frame = +2
Query: 191 LKTLTEIASLIETQKPNQAIETLTHLNKSI-SQNGNPNQRVSFYFSQALTNKITAQSSIA 249
++ L A ++ + A L LN+ + S +G P R +F+F AL QS ++
Sbjct: 59 IEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDAL------QSLLS 220
Query: 250 SSNSSS-----TTWEELTLS---YKALNDACPYSKFAHLTANQAILEATEGSNNIHIVDF 301
SN ++ ++ E+ S +KA + P F+ T NQA+LEA GS +H+VDF
Sbjct: 221 GSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDF 400
Query: 302 GI 303
I
Sbjct: 401 EI 406
>AV770800
Length = 514
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Frame = -1
Query: 436 GFVERFETAFNYFAAFFESLEPNMALDSPERFQVESLLLGRRIDGVIGVR-----ERMED 490
G +ERF A +Y++ F+SLE P++ E + L R I V+ ER E
Sbjct: 499 GLLERFTEALHYYSTVFDSLEGCPV--EPDKALAE-MYLQREICNVVCCEGTARVERHEP 329
Query: 491 KEQWKVLMENCGFESVGLSHYAISQAKILLWNYSYSSLYSLVESQPAFLSLAWKDVPLLT 550
+W+ + GF V L A +QA +L +SS VE + L+L W P L
Sbjct: 328 LAKWRERLGKAGFRPVHLGSDAFTQASMLF--TLFSSEGYCVEEKEGCLTLGWHSRPPLA 155
Query: 551 VSSWR 555
S+W+
Sbjct: 154 ASAWQ 140
>TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein (OJ1127_E01.12 protein),
partial (4%)
Length = 691
Score = 43.1 bits (100), Expect = 1e-04
Identities = 27/73 (36%), Positives = 42/73 (56%), Gaps = 4/73 (5%)
Frame = +2
Query: 486 ERMEDKEQWKVLM-ENCGFESVGLSHYAISQAKILLWNYSYSSLYSLVESQP---AFLSL 541
ER E +W+ LM E GF +G++ + Q++ LL YS + YS+++ + L+L
Sbjct: 41 ERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCEN-YSVMKQEEDGGEGLTL 217
Query: 542 AWKDVPLLTVSSW 554
W D PL TVS+W
Sbjct: 218 GWLDQPLYTVSAW 256
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 474 LGRRIDGVIGVR-----ERMEDKEQWKVLMENCGFESVGLSHYAISQAKILLWNYSYSSL 528
LG +I V+ ER E QW+ M + GF V L A QA +LL ++
Sbjct: 64 LGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASMLLALFAGGDG 243
Query: 529 YSLVESQPAFLSLAWKDVPLLTVSSWR 555
Y VE L L W PL+ S+W+
Sbjct: 244 YR-VEENNGCLMLGWHTRPLIATSAWK 321
>AV778595
Length = 594
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 23/103 (22%)
Frame = +3
Query: 21 QKQQQEQHEQQQHQHHHHHQ------------NILGITNPLSVSL----HPWHNNNIPVS 64
QKQ++EQ ++ H HHHHHQ N NP S S P + P +
Sbjct: 63 QKQRREQWKKHHHHHHHHHQVVAVNNKSYCYGNRTPNPNPSSPSRSHAPSPLSSQPAPPN 242
Query: 65 SST-----SLPPLSFPPTDFTDP--FQVGSGPENTDPAFNFPS 100
S+T LPPL PP P S P P + PS
Sbjct: 243 STTPFLAYHLPPLLLPPLPSNTPSASSTPSSPTPPPPTISLPS 371
>BP072816
Length = 492
Score = 39.7 bits (91), Expect = 0.001
Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 9/164 (5%)
Frame = +1
Query: 31 QQHQHHHHHQNILGITNPLS---------VSLHPWHNNNIPVSSSTSLPPLSFPPTDFTD 81
+Q HHHHH + + N ++ +S P H+ P SSS+S PL PPT
Sbjct: 4 EQTPHHHHHSDSINKLNHIN*SNTHHNPPLSHQPCHS---PSSSSSSSSPLPSPPTTLHA 174
Query: 82 PFQVGSGPENTDPAFNFPSPLDPHSTTFRFSDFDSDDWMDTLMSAADSHSDFHLNPFSSC 141
P + P + A P P P AA++ S P +S
Sbjct: 175 P---STSPSSAPSATAAPPPSTP-------------------TPAANTSS----KPSTSS 276
Query: 142 PTRLSPQPDLLLPATAPLQIPTQPPTPQRKNDNTTTETTSSFSS 185
S P PA++ L P +P P +T + +S S+
Sbjct: 277 KPTTSAAP----PASSLLSTPPKPAGPPSNPSSTNSPAPASTSA 396
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 39.7 bits (91), Expect = 0.001
Identities = 45/181 (24%), Positives = 70/181 (37%), Gaps = 6/181 (3%)
Frame = +2
Query: 55 PWHNNNIPVSSSTSLPPLSFPPTDFTDPFQVGSGPENTDPAFNFPSPLDPHSTT----FR 110
PW + SSS L P P T T P S P + PSP P +T
Sbjct: 167 PWRLSRQRCSSSPWLLP---PQTPTTSPAFSPSTPSSPPSTTTSPSPTSPPRSTNGPQSP 337
Query: 111 FSDFDSDDWMDTLMSAADSHSDFHLNPFSSCPTRLSPQPDLLLPATAPLQIP--TQPPTP 168
+ + W + + S +P +S T +P+ P TAP P T+PP P
Sbjct: 338 SAPSTTPPWTTSSQNTHQSPPSRTSSPSTSSSTTSAPRSSTRSP-TAPPSPPQCTKPPAP 514
Query: 169 QRKNDNTTTETTSSFSSSTNPLLKTLTEIASLIETQKPNQAIETLTHLNKSISQNGNPNQ 228
R +++T TS+ S + T S + + P + T + ++S+ P Q
Sbjct: 515 PRAPPDSSTSPTSAAGKSDS--APRTTTAPSPLRSSNP*RKSPTTSPSSRSVRFFPPPQQ 688
Query: 229 R 229
+
Sbjct: 689 K 691
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,462,438
Number of Sequences: 28460
Number of extensions: 182003
Number of successful extensions: 4285
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 2847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3628
length of query: 555
length of database: 4,897,600
effective HSP length: 95
effective length of query: 460
effective length of database: 2,193,900
effective search space: 1009194000
effective search space used: 1009194000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC142222.7