
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142222.6 - phase: 0
(123 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP074735 28 0.34
TC10904 weakly similar to UP|Q62258 (Q62258) Spi2 proteinase inh... 28 0.59
TC13356 weakly similar to UP|Q9SVG3 (Q9SVG3) Reticuline oxidase-... 26 2.2
BP066896 25 2.9
TC10209 similar to UP|Q9SJQ5 (Q9SJQ5) At2g36500 protein, partial... 25 5.0
TC12325 similar to GB|AAP37767.1|30725490|BT008408 At2g43680 {Ar... 24 8.5
>BP074735
Length = 472
Score = 28.5 bits (62), Expect = 0.34
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 63 MKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE 109
+K ++Q + LN G W EI G CE L + H I R E
Sbjct: 470 IKAWQRQSNKFLNKGDWSMEIEEVGNCEALPLLSLNHVSILCRSVWE 330
>TC10904 weakly similar to UP|Q62258 (Q62258) Spi2 proteinase inhibitor,
partial (8%)
Length = 576
Score = 27.7 bits (60), Expect = 0.59
Identities = 12/42 (28%), Positives = 24/42 (56%)
Frame = -3
Query: 74 LNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSP 115
+N+G + +I + G+C LD + ++ ++G + PL SP
Sbjct: 460 INNGARKIKIKINGRCSGLDEAFILKSRLSGEEHSVFPLLSP 335
>TC13356 weakly similar to UP|Q9SVG3 (Q9SVG3) Reticuline oxidase-like
protein, partial (16%)
Length = 433
Score = 25.8 bits (55), Expect = 2.2
Identities = 16/35 (45%), Positives = 21/35 (59%)
Frame = +1
Query: 3 NLTSSPESLSPKRQSNSSFFITISAILAMLSRQAR 37
NLTS P S +PK +SS SA AM +R++R
Sbjct: 295 NLTSKPPSSAPKPLKSSS----KSAAAAMTTRESR 387
>BP066896
Length = 440
Score = 25.4 bits (54), Expect = 2.9
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -1
Query: 48 LLSNMSNKALSQFGKMKKTKKQRDNELNDGVW 79
LLS SN LS GK +T + +E G+W
Sbjct: 272 LLSTGSNLGLSGTGKTSETTRNLGDENGRGLW 177
>TC10209 similar to UP|Q9SJQ5 (Q9SJQ5) At2g36500 protein, partial (26%)
Length = 659
Score = 24.6 bits (52), Expect = 5.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 50 SNMSNKALSQFGKMKKTKKQRDNE 73
+N ++K + KMKKTK+QR ++
Sbjct: 124 NNTNSKNYRDYYKMKKTKQQRSSK 195
>TC12325 similar to GB|AAP37767.1|30725490|BT008408 At2g43680 {Arabidopsis
thaliana;}, partial (13%)
Length = 845
Score = 23.9 bits (50), Expect = 8.5
Identities = 13/49 (26%), Positives = 26/49 (52%)
Frame = +2
Query: 2 ANLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLS 50
AN P LS K + + FF+ +S+ + ++ + + KTKK+++
Sbjct: 2 ANGYGPPCKLSEKVANQAIFFLFLSSSSSWNQKKVKLIDKPHKTKKIIN 148
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,670,678
Number of Sequences: 28460
Number of extensions: 16552
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of query: 123
length of database: 4,897,600
effective HSP length: 79
effective length of query: 44
effective length of database: 2,649,260
effective search space: 116567440
effective search space used: 116567440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)
Medicago: description of AC142222.6