TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142143.6 - phase: 0 /pseudo
         (175 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV767121                                                               37  0.002
CB828232                                                               28  0.88
TC16786 similar to GB|AAG26330.2|11072094|AF231996 MLL/GAS7 fusi...    27  2.6
AV777368                                                               25  5.7
TC8885 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mt...    25  5.7
CB828515                                                               25  5.7
TC11643                                                                25  9.7

>AV767121 
          Length = 525

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +2

Query: 42 KFLSFGGRMVLFKFVLSFIHVYALSFFKVPSGI 74
          K +SFGGR+ L + VL+ + ++ LSFFK+P G+
Sbjct: 20 KTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGV 118


>CB828232 
          Length = 532

 Score = 28.1 bits (61), Expect = 0.88
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 47  GGRMVLFKFVLSFIHVYALSFFKV 70
           G R+  FK VLS + ++ LSFFK+
Sbjct: 409 GARVCCFKMVLSSLPLFFLSFFKI 480


>TC16786 similar to GB|AAG26330.2|11072094|AF231996 MLL/GAS7 fusion protein
           {Homo sapiens;} , partial (8%)
          Length = 480

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 20  LSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYALSFFKVPSGI-ISSM 78
           LSRL +W     R ++ LS+   F+     M  +++    I    +  FK+ S +   S+
Sbjct: 439 LSRLFYWGNPSTRSRETLSKLGFFILGFATMPKWRYY*KSIKTRLVKAFKLSSPVFFHSI 260

Query: 79  KSIFIKKKKKKLGCV 93
           +     ++ KKLG +
Sbjct: 259 RFQIFHREIKKLGII 215


>AV777368 
          Length = 604

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 51  VLFKFVLSFIHVYALSFFKVPSG 73
           +LF FVLSFI +  L  FK+P G
Sbjct: 97  ILFMFVLSFISMLLL-LFKLPRG 162


>TC8885 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mtc923,
           partial (32%)
          Length = 749

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 4   MGKVIFLYLGLPIGGDLSRLMFWEP 28
           +G  IF  + LP   DLS L FW P
Sbjct: 595 LGSAIFCLVTLPNNFDLS*LHFWYP 669


>CB828515 
          Length = 496

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 14/44 (31%), Positives = 23/44 (51%)
 Frame = -2

Query: 43  FLSFGGRMVLFKFVLSFIHVYALSFFKVPSGIISSMKSIFIKKK 86
           F+ +  ++  F  +L FIH+Y  S   +    ISS  SI I ++
Sbjct: 399 FILYSSKLKSFMTLLPFIHLY*FSIGLIAGLGISSNVSIIISRQ 268


>TC11643 
          Length = 494

 Score = 24.6 bits (52), Expect = 9.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 14  LPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGG 48
           LPI   +  L+ W   L    K L  CSKF S  G
Sbjct: 106 LPIPAYIIFLISWRASLSDSFKSLKLCSKFASSSG 2


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.357    0.167    0.590 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,852,103
Number of Sequences: 28460
Number of extensions: 33694
Number of successful extensions: 438
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of query: 175
length of database: 4,897,600
effective HSP length: 84
effective length of query: 91
effective length of database: 2,506,960
effective search space: 228133360
effective search space used: 228133360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 52 (24.6 bits)