BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142142.2 + phase: 0
(119 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17582 UP|RK16_LOTJA (Q9BBP9) Chloroplast 50S ribosomal protein... 221 3e-59
AV428128 31 0.048
AV771684 26 1.5
TC14666 similar to UP|Q9LVE5 (Q9LVE5) Gb|AAB61516.1, partial (75%) 26 2.0
TC19058 similar to UP|AAQ84314 (AAQ84314) Fiber protein Fb25, pa... 26 2.0
TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precu... 25 2.6
TC9392 25 2.6
TC15279 weakly similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10... 25 3.5
TC10341 similar to UP|O65850 (O65850) NTH23 protein, partial (23%) 25 3.5
TC14197 homologue to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein,... 25 4.5
TC14196 homologue to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein,... 25 4.5
BP055674 25 4.5
TC12227 24 5.9
TC16123 similar to UP|PGC2_HUMAN (O15173) Membrane associated pr... 24 7.7
TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 24 7.7
>TC17582 UP|RK16_LOTJA (Q9BBP9) Chloroplast 50S ribosomal protein L16,
complete
Length = 565
Score = 221 bits (562), Expect = 3e-59
Identities = 108/118 (91%), Positives = 114/118 (96%)
Frame = +1
Query: 1 MKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTV 60
MKG ++RGN I FG+YALQALEPAWITSRQIEAGRRAMSRNVRRGG+IWVRIFPDKPVTV
Sbjct: 88 MKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTV 267
Query: 61 RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIRTQFILS 118
RPTETRMGSGKGSPEYWVAVVKPGKI+YEMGGV ENIARKAISIAASKMPIRTQFI+S
Sbjct: 268 RPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISIAASKMPIRTQFIIS 441
>AV428128
Length = 415
Score = 31.2 bits (69), Expect = 0.048
Identities = 20/46 (43%), Positives = 24/46 (51%), Gaps = 6/46 (13%)
Frame = -2
Query: 36 RAMSRNVRRGG------KIWVRIFPDKPVTVRPTETRMGSGKGSPE 75
R +R RGG +IW R P P+ R ETR +GKGSPE
Sbjct: 156 RGRARRTGRGGEGPFGIRIWERENPS-PLVGRRWETRRRNGKGSPE 22
>AV771684
Length = 421
Score = 26.2 bits (56), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 32 EAGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETR 66
+ +RAMS++ G +V +FP P R E+R
Sbjct: 384 DEAKRAMSKDKMMIGSRYVELFPSTPDEARRAESR 280
>TC14666 similar to UP|Q9LVE5 (Q9LVE5) Gb|AAB61516.1, partial (75%)
Length = 1131
Score = 25.8 bits (55), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +2
Query: 70 GKGSPEYWVAVVKPGKILYEMGGVPENIARKA 101
G GSP + +AVV ++Y+ GV + R+A
Sbjct: 407 GAGSPAFAIAVVLSCIVMYDASGVRLHAGRQA 502
>TC19058 similar to UP|AAQ84314 (AAQ84314) Fiber protein Fb25, partial (41%)
Length = 301
Score = 25.8 bits (55), Expect = 2.0
Identities = 11/26 (42%), Positives = 12/26 (45%)
Frame = -3
Query: 54 PDKPVTVRPTETRMGSGKGSPEYWVA 79
P + VRP T G GS WVA
Sbjct: 278 PATNIAVRPARTEAGDSSGSVASWVA 201
>TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precursor,
partial (43%)
Length = 1038
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 24 AWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 72
AW T+ RR + +G + W R P V RP G G+G
Sbjct: 692 AWTTTSLPHYHRRQREKEREKGRRDWDRELP--MVRARPRAPMQGQGQG 552
>TC9392
Length = 650
Score = 25.4 bits (54), Expect = 2.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 25 WITSRQIEAGRRAMSRNVRRGGKIWVRIFP 54
W + + GR S+N + +W+ IFP
Sbjct: 269 WTPTTRAAGGRDT*SKN*KMASSLWISIFP 358
>TC15279 weakly similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partial
(28%)
Length = 464
Score = 25.0 bits (53), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 25 WITSRQIEAGRRAMSRNVRRGGKIWVRI 52
W S + AGR A SR R GG W R+
Sbjct: 437 WTWSGRCIAGRFATSRRRRGGGLPWRRL 354
>TC10341 similar to UP|O65850 (O65850) NTH23 protein, partial (23%)
Length = 801
Score = 25.0 bits (53), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 53 FPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGV 93
FP P +R E R GSG E + +P + + +GGV
Sbjct: 394 FPASPAGLRGAERRRGSGPDGEERRRSRPQPQRRVGGLGGV 516
>TC14197 homologue to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein, partial
(95%)
Length = 976
Score = 24.6 bits (52), Expect = 4.5
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Frame = +2
Query: 13 FGKYALQALEPAW---ITSRQIEAGR---RAMSRNVR---RGGKIWVRIFPDKPVTVRPT 63
F K L LE W + Q E G R ++ N++ G K+ + T T
Sbjct: 158 FSKMVL--LEKLWDDVVAGPQPERGLGALRKLTTNIKDEGEGSKLQRNLSMPPTPTTPGT 331
Query: 64 ETRMGSGKGSPEYWVAVVKPG 84
T GSG+ + W +V PG
Sbjct: 332 PTTPGSGRKADNVWRSVFHPG 394
>TC14196 homologue to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein, partial
(95%)
Length = 1040
Score = 24.6 bits (52), Expect = 4.5
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Frame = +3
Query: 13 FGKYALQALEPAW---ITSRQIEAGR---RAMSRNVR---RGGKIWVRIFPDKPVTVRPT 63
F K L LE W + Q E G R ++ N++ G K+ + T T
Sbjct: 15 FSKMVL--LEKLWDDVVAGPQPERGLGALRKLTTNIKDEGEGSKLQRNLSMPPTPTTPGT 188
Query: 64 ETRMGSGKGSPEYWVAVVKPG 84
T GSG+ + W +V PG
Sbjct: 189PTTPGSGRKADNVWRSVFHPG 251
>BP055674
Length = 521
Score = 24.6 bits (52), Expect = 4.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 57 PVTVRPTETRMGSGKGSPEYWVAVVKPGKILY 88
P +RP T + +G PE ++V +PG+ ++
Sbjct: 411 PFHIRPKRTYVLCKEGFPEACLSVAQPGRPMF 316
>TC12227
Length = 686
Score = 24.3 bits (51), Expect = 5.9
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = -2
Query: 85 KILYEMGGVPENIARKAISIAASKMPIRTQFI 116
KI +E G P NI+ KAI+ +A + FI
Sbjct: 154 KIGFENGAFPSNISSKAINPSAKS*TTESCFI 59
>TC16123 similar to UP|PGC2_HUMAN (O15173) Membrane associated progesterone
receptor component 2 (Progesterone membrane binding
protein) (Steroid receptor protein DG6), partial (15%)
Length = 604
Score = 23.9 bits (50), Expect = 7.7
Identities = 17/51 (33%), Positives = 21/51 (40%), Gaps = 1/51 (1%)
Frame = -3
Query: 53 FPDKPVTVRP-TETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAI 102
FP RP TET +G P YW++ I+ P IA K I
Sbjct: 191 FPVVTSNTRPFTET*IGFDGSVPLYWLSCCAVISIVVFFSPQPHTIANKDI 39
>TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (24%)
Length = 602
Score = 23.9 bits (50), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 34 GRRAMSRNVRRGGKIWVRIFPDK 56
GR RN GG+IW R+FP +
Sbjct: 459 GR*GRRRNC--GGRIW*RVFPSR 397
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,837,544
Number of Sequences: 28460
Number of extensions: 21671
Number of successful extensions: 107
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of query: 119
length of database: 4,897,600
effective HSP length: 79
effective length of query: 40
effective length of database: 2,649,260
effective search space: 105970400
effective search space used: 105970400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)
Medicago: description of AC142142.2