TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142096.6 - phase: 0 /pseudo
         (930 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17198 weakly similar to UP|Q9LQB3 (Q9LQB3) F4N2.4, partial (20%)    217  6e-57
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr...    39  0.003
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)    35  0.042
AI967639                                                               33  0.21
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar...    33  0.21
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    32  0.35
BI420041                                                               31  0.79
BP084604                                                               30  1.3
CB829142                                                               30  2.3
TC12685 weakly similar to UP|Q7QA92 (Q7QA92) AgCP13961 (Fragment...    29  3.9
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)           28  5.1
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)           28  5.1
TC8565 homologue to UP|Q9AVQ9 (Q9AVQ9) Phosphate transporter, pa...    28  6.7

>TC17198 weakly similar to UP|Q9LQB3 (Q9LQB3) F4N2.4, partial (20%)
          Length = 917

 Score =  217 bits (553), Expect = 6e-57
 Identities = 125/184 (67%), Positives = 142/184 (76%)
 Frame = +2

Query: 747 YGQFQGKCISYRCRNPTRIYQCL**LEFVSRNIFTNFEITT*DSRTEKYAKCITG*N*RC 806
           Y  F+G C+++ CRN TRIYQ L  L+ +S N+ TNFEI T DSRTEKY KCI G*N*RC
Sbjct: 125 YCNFKG*CVTFSCRNSTRIYQHLRRLKLIS*NVLTNFEIVTRDSRTEKYTKCIAG*N*RC 304

Query: 807 G*AD*VESG*TSYFEATTSNAETKASSNQITES*V*GKLR*G*RL*SRPCAS*KKKIEER 866
           G*A *VES *TS  EATT NA+T+AS+NQI ES V*GKL  G RL* R     K+KI ER
Sbjct: 305 G*AH*VESR*TSLLEATTPNAQTEASTNQIIESQV*GKLCEGKRL*PRS*TGSKEKIGER 484

Query: 867 GKA*S*RGCS*NT*RQLLLA*CEGKRKVFNGESKS*EVWKD*SFPSRARTCFQIWTTRKR 926
            +A*S RGCS* T*RQL LA* EG+R+VF G+ KS EVWK *SFPSRARTCF +WTTRKR
Sbjct: 485 FEA*SQRGCS*IT*RQLFLA*GEGEREVFKGKRKSREVWKS*SFPSRARTCF*VWTTRKR 664

Query: 927 EEEK 930
           +EEK
Sbjct: 665 KEEK 676


>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
           1-like protein 3, partial (81%)
          Length = 1298

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 30/127 (23%), Positives = 55/127 (42%), Gaps = 7/127 (5%)
 Frame = +2

Query: 81  KRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSK---- 136
           K  K + K  +  +  + F   ++ E+D+ +DD     L++  E   ++ S+ + K    
Sbjct: 542 KNTKPITKTEKCESFFNFFNPPQVPEDDDDIDDDAVEELQNLMEHDYDIGSTIRDKIIPH 721

Query: 137 ---YHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDERSYCKKQVLQG* 193
              +   E +  +FE I+    D  EDE   +DDDE +E  + +  D+     K   +  
Sbjct: 722 AVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKSG 901

Query: 194 KSKRKGK 200
              R GK
Sbjct: 902 SKARPGK 922


>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
          Length = 1093

 Score = 35.4 bits (80), Expect = 0.042
 Identities = 40/162 (24%), Positives = 71/162 (43%)
 Frame = +2

Query: 8   SIANGTNTSNKSTSKKKKNNKMGPEAVAMKAKAQKTNTNPFESIWSRRKFEVMGQKRKGD 67
           S +   + S +  SKK+K     P+    KA ++K      +++   +     G+K K  
Sbjct: 278 SASASLSKSKQPASKKRKTENEKPDTKG-KASSKKQTDKSSKALVKDQGKSKSGKKAKAV 454

Query: 68  TKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQL 127
             R  +  ++ V+     +LKE + +T +   I R +G +      FG  ++     R+ 
Sbjct: 455 PSREAM-HAVVVD-----ILKEVDFNTATLSDILRPLGTH------FGVDLMH----RKA 586

Query: 128 NVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDE 169
            VK       +   +++DE E  DG G  D +D   G+DDDE
Sbjct: 587 EVKDIITDVINNMSDEEDEGEEADGDGDADKDDN--GDDDDE 706


>AI967639 
          Length = 335

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 28/91 (30%), Positives = 49/91 (53%)
 Frame = +1

Query: 122 QRERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDE 181
           +R+++ ++ SS +      EED++E +G +     + EDE   +DDD+ D+    E SD 
Sbjct: 61  KRKQRRDISSSSEG----DEEDEEEDQGDEY----NLEDEEEDDDDDDDDDLSISEDSDS 216

Query: 182 RSYCKKQVLQG*KSKRKGKR*RPAGRIR*GL 212
               K + L G +++R+ KR R    I+ GL
Sbjct: 217 DKPRKVKQLPG-RTRRETKR-RSVDEIQSGL 303


>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
           thaliana;}, partial (44%)
          Length = 700

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 18/41 (43%), Positives = 24/41 (57%)
 Frame = +2

Query: 141 EEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDE 181
           E+DDD+ E  DG   DD +D   G DDD+ +E   +EG  E
Sbjct: 29  EDDDDDGEDDDG-DEDDDDDAPGGGDDDDDEEDEEEEGGVE 148



 Score = 32.7 bits (73), Expect = 0.27
 Identities = 15/43 (34%), Positives = 26/43 (59%)
 Frame = +2

Query: 135 SKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQE 177
           S+  +S ++DD+ +G D  G +D +D+  G  DD+ DE   +E
Sbjct: 5   SRTRMSGDEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEE 133


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 18/53 (33%), Positives = 31/53 (57%)
 Frame = +3

Query: 129 VKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDE 181
           V++  + +    EE+DDE E  D    DD +D+   E++D+ D+   +EGS+E
Sbjct: 237 VQTDNEEEEDDDEEEDDEDEDDDD---DDDDDDDGEEEEDDDDDDEEEEGSEE 386


>BI420041 
          Length = 452

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 14/46 (30%), Positives = 25/46 (53%)
 Frame = +2

Query: 139 LSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDERSY 184
           + EE+DDEF+  + L  +D + +   +DD++ +E    E  D   Y
Sbjct: 245 MDEEEDDEFDYEEPLNDEDEDGDEYYDDDEQEEEEFEDEDEDSVPY 382


>BP084604 
          Length = 463

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
 Frame = -2

Query: 8   SIANGTNTSNKSTSKKKK-------NNKMGPEAVAMKAKAQKTNTNPFESIWSRRKFEVM 60
           S+ANG  +  K++S KKK       ++ + P + A K    K       S+     F+ +
Sbjct: 462 SVANGEISKIKASSTKKKDKTPAKPSSSLSPGSEASKLNYIKQKLQGLTSMLEASDFKSL 283

Query: 61  GQKRKGDTKRMGLARSLA--VEKRKKTLLKEYEQ 92
             K K +++  GL + ++  VE     L +EY Q
Sbjct: 282 DTKAKLESEMKGLLQDVSKMVESSSS*LTQEYWQ 181


>CB829142 
          Length = 534

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 421 CRFRR*R*YQCWFRRRR*GRRKSC 444
           CR RR R ++C  RRRR G RK C
Sbjct: 76  CRSRRGRRFRCRRRRRRRGLRKGC 5


>TC12685 weakly similar to UP|Q7QA92 (Q7QA92) AgCP13961 (Fragment), partial
           (9%)
          Length = 547

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +2

Query: 135 SKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDERSYCKKQVLQG 192
           ++Y + EEDD+EFE  D    DD+ D+   +D  E     N E  D+    KK+ L+G
Sbjct: 155 TRYKVDEEDDEEFE--DAKEFDDYNDD---DDAPENGYAGNFE-EDDGFARKKRKLRG 310


>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
          Length = 735

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +3

Query: 68  TKRMGLARSLAVEKRKKTLLKE--YEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRER 125
           T  + L + + +  R + +++    ++  K  E +++ + E +E  +D        + E+
Sbjct: 222 TTSITLMKRMRMRMRMRMMMRGGGRKKKLKLVEKLNQGVEEEEEDEED--------EEEQ 377

Query: 126 QLNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDF--EDEMLGEDDDETDE 172
             +    +    H  EED++E  G +    ++   EDE   ED+DE +E
Sbjct: 378 TPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDEDEE 524


>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
          Length = 1008

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = -2

Query: 141 EEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDERSYCKKQVLQG*KSKRK 198
           ++DDDE +  +  G +D E+E + E+D+E +E   ++  DE      + LQ  K ++K
Sbjct: 392 DDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEE---EDEEDE------EALQPPKKRKK 246


>TC8565 homologue to UP|Q9AVQ9 (Q9AVQ9) Phosphate transporter, partial (97%)
          Length = 1913

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 532  NHTCCRKSKESTSILWSIIAVLCCFGK*ET 561
            N +CCRKS+ ++  +W    VL CF +* +
Sbjct: 1423 NLSCCRKSRSNSRCIW----VLVCFSE*RS 1500


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.377    0.171    0.654 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,841,696
Number of Sequences: 28460
Number of extensions: 179151
Number of successful extensions: 3683
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 2006
Number of HSP's gapped (non-prelim): 1798
length of query: 930
length of database: 4,897,600
effective HSP length: 99
effective length of query: 831
effective length of database: 2,080,060
effective search space: 1728529860
effective search space used: 1728529860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.6 bits)
S2: 60 (27.7 bits)