TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141865.9 - phase: 0 /pseudo
         (547 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%)         29  2.2
TC8717                                                                 28  5.0

>TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%)
          Length = 850

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +2

Query: 34  QYLVGSKITVYT-DHSTIKYLLNKKDA----KPRLIQLIFLLQEFDLEIKDKKGVENVVA 88
           +Y+  ++  + T + S I   LN  DA     PRL Q + L     L ++  K V +++ 
Sbjct: 332 KYIKDARSLIATQEQSEIASALNLLDAALAISPRLDQALELRARSLLYLRRFKEVADMLQ 511

Query: 89  DHLSRLRETNEDELPLDDS 107
           D++  LR  NED + +  S
Sbjct: 512 DYIPSLRMANEDPVSVSSS 568


>TC8717 
          Length = 577

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 343 HKLVDKWRSQIDKSKLSLKK 362
           HKL  KW+S+I+K KL  +K
Sbjct: 480 HKLYHKWQSKINKEKLKKEK 421


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.336    0.148    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,891,132
Number of Sequences: 28460
Number of extensions: 120753
Number of successful extensions: 924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of query: 547
length of database: 4,897,600
effective HSP length: 95
effective length of query: 452
effective length of database: 2,193,900
effective search space: 991642800
effective search space used: 991642800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.6 bits)