BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141863.3 - phase: 0
(773 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV416122 33 0.23
CN825654 32 0.38
BP054883 31 0.66
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 31 0.66
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 30 1.1
BP076862 30 1.5
TC11315 similar to UP|AHM2_ARATH (O64474) Potential cadmium/zinc... 30 1.9
BP043412 29 2.5
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 29 2.5
AV409964 29 3.3
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 29 3.3
AV417904 28 4.3
TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodula... 28 4.3
TC9803 28 4.3
TC10547 similar to BAD12184 (BAD12184) 12-oxophytodienoic acid 1... 28 4.3
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 28 5.6
AV412520 28 5.6
BE122625 28 7.3
BP056473 28 7.3
AV779190 27 9.5
>AV416122
Length = 414
Score = 32.7 bits (73), Expect = 0.23
Identities = 25/101 (24%), Positives = 39/101 (37%)
Frame = +3
Query: 660 VPYPPTLPRKRGWSVAIKTKPRGRIETEERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQ 719
VP P P + +A +P N DD + + D D Q
Sbjct: 114 VPDPQEQPPTKAPKLAATPEPNPDSNDNNNNHPAVSATDDCSSQPKEAANDDNEPDNDVQ 293
Query: 720 VEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDG 760
EG++ + E E EDE ED DD++ G+ + ++ G
Sbjct: 294 FEGEEEEDD--EEDKEEEDEEEDDEDDDSNGEAEVDRKGKG 410
>CN825654
Length = 580
Score = 32.0 bits (71), Expect = 0.38
Identities = 16/30 (53%), Positives = 18/30 (59%), Gaps = 5/30 (16%)
Frame = +2
Query: 740 NEDVVDDNNEGDHQDNQVDDG-----DVDE 764
N DD+N+GD DN VDDG DVDE
Sbjct: 338 NAAAFDDDNDGDVMDNSVDDGRDGNDDVDE 427
>BP054883
Length = 545
Score = 31.2 bits (69), Expect = 0.66
Identities = 18/46 (39%), Positives = 23/46 (49%)
Frame = -1
Query: 520 FPAWFKQRVYNAEPTDEVIRLRQLSQGPLQCANEFHTYFVNGYKFH 565
F WFK R A D L+ LS+GP A F Y +NGY+ +
Sbjct: 131 FIEWFKTR---ALMDDVPGHLKDLSRGPNIIARRFSGYVINGYRLN 3
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 31.2 bits (69), Expect = 0.66
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = +3
Query: 735 EVEDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASD 770
E +DE+ED DD+++ D + + DD D DE S+
Sbjct: 276 EEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSE 383
Score = 30.8 bits (68), Expect = 0.86
Identities = 17/78 (21%), Positives = 40/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 690 NEEVAYQADDMTHVNEIIEVDQ-VTSW--QDSQVEGDQVDPSILEMRNEVEDENEDVVDD 746
+++V ++ + + +IE+ + +W D ++ D + E ED++E+ D+
Sbjct: 111 SDDVVVKSPNDLRLYRLIELHNGLQAWLVHDPEIYPDGPPKPVQTDNEEEEDDDEEEDDE 290
Query: 747 NNEGDHQDNQVDDGDVDE 764
+ + D D+ DDG+ +E
Sbjct: 291 DEDDDDDDDDDDDGEEEE 344
Score = 27.3 bits (59), Expect = 9.5
Identities = 12/46 (26%), Positives = 29/46 (62%)
Frame = +3
Query: 719 QVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDE 764
Q + ++ + E +E ED+++D DD+++G+ +++ DD + +E
Sbjct: 240 QTDNEEEEDDDEEEDDEDEDDDDD-DDDDDDGEEEEDDDDDDEEEE 374
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 30.4 bits (67), Expect = 1.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 723 DQVDPSILEMRNEVEDENEDVVDDNNE----GDHQDNQVDDGDVDEYNYASD 770
D DP E +E +D+++D DD + G +++ DD D+Y+ ASD
Sbjct: 60 DDSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSHDDYDSASD 215
>BP076862
Length = 455
Score = 30.0 bits (66), Expect = 1.5
Identities = 22/72 (30%), Positives = 36/72 (49%)
Frame = -1
Query: 688 ERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMRNEVEDENEDVVDDN 747
ERN Y+ DD+ HV++ D V S + D I E + E+EN D+
Sbjct: 383 ERNNVNVYEDDDVQHVDD----DLVASSSNPPTLDDDY---IQETFSSEEEENM----DD 237
Query: 748 NEGDHQDNQVDD 759
+EG+ +D+ ++D
Sbjct: 236 DEGESEDDDMED 201
>TC11315 similar to UP|AHM2_ARATH (O64474) Potential
cadmium/zinc-transporting ATPase 2 , partial (12%)
Length = 570
Score = 29.6 bits (65), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (53%)
Frame = -3
Query: 727 PSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASD 770
P +++ N +E N++ + DNNEG +DN D +D + D
Sbjct: 325 PCLIQNLNNLELRNDETIMDNNEGS*RDN--DRNLIDSFERFQD 200
>BP043412
Length = 467
Score = 29.3 bits (64), Expect = 2.5
Identities = 14/44 (31%), Positives = 24/44 (53%)
Frame = -1
Query: 336 LRVDELEKMEKNMPIIICQLEQIFPPGFFDSMEHLPVHLAYEAI 379
+ V E+ + E+ + ++ IF PG D + HL VHL + A+
Sbjct: 344 MNVREISREEEEVKGRSQEMRPIFTPGMEDILHHLLVHLGHIAV 213
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (42%)
Frame = +2
Query: 709 VDQVTSWQDSQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDD 759
+ SW + E + + + EDE+ED DD E D D+ DD
Sbjct: 713 IPHAVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDD 865
Score = 28.1 bits (61), Expect = 5.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 737 EDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASDN 771
+ + ED+ +D+ +GD +++ DD D +E + D+
Sbjct: 752 QSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDD 856
>AV409964
Length = 434
Score = 28.9 bits (63), Expect = 3.3
Identities = 19/52 (36%), Positives = 23/52 (43%), Gaps = 10/52 (19%)
Frame = +2
Query: 45 YDISRKQN--FKLRAALMWTINDFPA----YGML----SGWSTHGRFACPHC 86
YDISRK F L L+WT + Y ++ GW HG A HC
Sbjct: 29 YDISRKSTGWFCLPKLLLWTQ*SYEPK*TEYAVVWNEECGWQCHGSLASEHC 184
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 28.9 bits (63), Expect = 3.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 731 EMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDE 764
E + EDE+ + +D+++ D D++ DDG DE
Sbjct: 440 ENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDE 339
>AV417904
Length = 413
Score = 28.5 bits (62), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +1
Query: 162 IPRYGVDH--HWTKRSIFWDLPYWKD 185
+P + V H W R +FW + YWKD
Sbjct: 31 LPSFWVQHGQKWRCRVLFWIIRYWKD 108
>TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodulation aberrant
root formation protein), complete
Length = 3308
Score = 28.5 bits (62), Expect = 4.3
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Frame = +2
Query: 41 GELTYDISRKQNF--------KLRAALMWTINDFPAYGMLSGWSTHGRFACPHCMENTKA 92
GE+ S+ +N K R +L I D P L W + F PH
Sbjct: 1025 GEIPESFSKLKNLTLMNFFQNKFRGSLPSFIGDLPNLETLQVWENNFSFVLPH------- 1183
Query: 93 FTLESGGKSSWFDCHRPFLPHNHPFRRLKNG----FKKDERVFVGPPPK 137
L G+ +FD + L P K+G F + F GP PK
Sbjct: 1184 -NLGGNGRFLYFDVTKNHLTGLIPPDLCKSGRLKTFIITDNFFRGPIPK 1327
>TC9803
Length = 696
Score = 28.5 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (59%)
Frame = +2
Query: 612 LFYCDWFDPSPRWTKINKLCNTVDIRVDKKYKEYD 646
LF DWF S ++ + C+T+ ++K+ +EYD
Sbjct: 80 LFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEYD 184
>TC10547 similar to BAD12184 (BAD12184) 12-oxophytodienoic acid 10,
11-reductase, partial (16%)
Length = 583
Score = 28.5 bits (62), Expect = 4.3
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 305 FIPIAFSSLPKHVLDPLIEISQFFKNLCASTLRVDELEKMEKNMPIII----CQLEQIFP 360
F I+F ++ KHV+ + I + F + + + +K++ NMP+++ L Q FP
Sbjct: 555 FSDISFLNVGKHVIQLVFFI*KLFLKMVYESCFKN*KQKLQPNMPLVLQIRYLTLAQYFP 376
Query: 361 PGFFDSMEH 369
F + H
Sbjct: 375 LAFSVIITH 349
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 28.1 bits (61), Expect = 5.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 737 EDENEDVVDDNNEGDHQDNQVDDGD 761
+D+++D DD+++ D D+ DDGD
Sbjct: 86 DDDDDDDDDDDDDDDDDDDDDDDGD 160
>AV412520
Length = 307
Score = 28.1 bits (61), Expect = 5.6
Identities = 22/85 (25%), Positives = 38/85 (43%), Gaps = 4/85 (4%)
Frame = -3
Query: 661 PYPPTLPRKRGWSVAIK-TKPRGRIETEER---NEEVAYQADDMTHVNEIIEVDQVTSWQ 716
P+PPT P + K RIET + ++ ++ NE ++ W+
Sbjct: 281 PHPPTEPPAPASGALVSHNKEPTRIETSSSFLFSSAISLFSEGKRGENEFTRYRKICRWR 102
Query: 717 DSQVEGDQVDPSILEMRNEVEDENE 741
+ E + SI+ +R+E+E ENE
Sbjct: 101 EK--ERKEKLNSIVCLRDEIEGENE 33
>BE122625
Length = 384
Score = 27.7 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 598 KHIYELSYNDNKVVLFYCDWFDPSPRW 624
K YE+ V+LF DWF P P W
Sbjct: 190 KSSYEIHMVVCIVILFKLDWFHPEPCW 110
>BP056473
Length = 512
Score = 27.7 bits (60), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = +1
Query: 651 AHNVRQVYYVPYPPTLPRKRG 671
A N+ Q + +PYPP LP++ G
Sbjct: 334 AKNLVQKFPIPYPPLLPKQEG 396
>AV779190
Length = 539
Score = 27.3 bits (59), Expect = 9.5
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +3
Query: 684 IETEERNEEVAYQ---ADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMRNEVEDEN 740
++++++++ Y+ A++ + N+ + V DS++E D++ PS +DEN
Sbjct: 234 VDSDDQSDFYEYEEERAEEESRKNKRYDPVFVNDELDSEIE-DEIVPS--------DDEN 386
Query: 741 EDVVDD--------NNEGDHQDNQVDDG 760
ED DD N + D + DDG
Sbjct: 387 EDDDDDYFGTKRNANAQSDDDSGEEDDG 470
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,309,505
Number of Sequences: 28460
Number of extensions: 240168
Number of successful extensions: 1167
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of query: 773
length of database: 4,897,600
effective HSP length: 97
effective length of query: 676
effective length of database: 2,136,980
effective search space: 1444598480
effective search space used: 1444598480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141863.3