TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141862.21 - phase: 0 /pseudo
         (659 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11787 similar to UP|Q84P17 (Q84P17) Acyl-activating enzyme 18,...    28  3.6
AV767160                                                               27  8.0
BP066067                                                               27  8.0

>TC11787 similar to UP|Q84P17 (Q84P17) Acyl-activating enzyme 18, partial
           (7%)
          Length = 494

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +3

Query: 634 LKHNLLSISQFCDNGYDVMF 653
           +KH+L SISQ C++GY+V+F
Sbjct: 387 MKHHL-SISQLCNSGYEVVF 443


>AV767160 
          Length = 354

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 4/44 (9%)
 Frame = -2

Query: 109 PLRRVNPLLCHLKESLQNLLKPTKPVNLKKNHL----MEILMKI 148
           P  +V+PLLCH   S +NLL   K + L   H     M+ L+K+
Sbjct: 314 PQLQVHPLLCHS*TSWENLLAQCKVLILVSAHNG*HDMDFLIKL 183


>BP066067 
          Length = 505

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
 Frame = -2

Query: 573 SWYLDSGCSRHMTGE-KSLFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSISINN 627
           SW  DSG S H+T + + L  ++TM    +V     Q   I+  G    SS  I+N
Sbjct: 300 SW*ADSGASHHVTNDPQHLMESITMPGQEQVYVCSGQGLPILSIGFTSFSSPLISN 133


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.351    0.154    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,246,995
Number of Sequences: 28460
Number of extensions: 150445
Number of successful extensions: 1366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of query: 659
length of database: 4,897,600
effective HSP length: 96
effective length of query: 563
effective length of database: 2,165,440
effective search space: 1219142720
effective search space used: 1219142720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 58 (26.9 bits)