TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141862.20 - phase: 0 /pseudo
         (954 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               95  5e-20
BP084332                                                               78  8e-15

>BP066094 
          Length = 532

 Score = 95.1 bits (235), Expect = 5e-20
 Identities = 64/143 (44%), Positives = 88/143 (60%)
 Frame = +1

Query: 531 GSNQVTSILRN*SWHNIISNGCKKCFS*WCH*RRSVC*TTSWI*GS*AS*PCL*T*EITI 590
           GS Q T ++ + S HN  S+ C +C S W H R S+C +T         *P     EI++
Sbjct: 94  GSYQTTDLILSESQHNSSSDEC*ECLSKWLHLRGSLCSSTPRFXR*EEL*PYFQIEEISL 273

Query: 591 WLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS*ERHFDCANIC**YNIWFY*CISL 650
           W E SSQS+V* T+   + K*  K  S +N+L ++    + +CAN+C**Y IW  * IS+
Sbjct: 274 WSEASSQSMV*ETQLIPSGK*VXKG*SRYNSLLQNLQR*YINCANLC**YYIWIC*SISM 453

Query: 651 QRIF*VNAG*I*NEHDGRIEILS 673
           QR+F* +AG*I*N +DGR +ILS
Sbjct: 454 QRVF*DDAG*I*NAYDGRTQILS 522


>BP084332 
          Length = 368

 Score = 77.8 bits (190), Expect = 8e-15
 Identities = 47/109 (43%), Positives = 64/109 (58%)
 Frame = +1

Query: 834 NYCYVYCRSRIHFSCKLLYTTTLDETSVGRLSD*CLQYSHLL**YCCYLFVKESNSTF*S 893
           N+C +YCR RI+ S  + ++  LDETS G LS+   QY +LL**+CC     ES  TF  
Sbjct: 37  NHCTIYCRGRIYLSSNMQHSDALDETSAGGLSNP*EQYPNLL**HCCNFIE*ESYLTFKG 216

Query: 894 QAY*DQTPFYQRLCSKRNFGYTIH*Y*TSMS*YIYKTFIC*KI*FY*EK 942
           +A+* +   Y RLC++      + *Y* SM  Y+YK      I*F+ EK
Sbjct: 217 KAH*GKVSLY*RLCTEGRTSSEVC*Y*PSMGRYLYKALSRG*I*FHSEK 363


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.390    0.173    0.760 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,645,807
Number of Sequences: 28460
Number of extensions: 238454
Number of successful extensions: 4116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 2890
Number of HSP's gapped (non-prelim): 1403
length of query: 954
length of database: 4,897,600
effective HSP length: 99
effective length of query: 855
effective length of database: 2,080,060
effective search space: 1778451300
effective search space used: 1778451300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (21.7 bits)
S2: 60 (27.7 bits)