BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141436.6 - phase: 0
(1173 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18096 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%) 272 2e-73
AV769433 213 2e-55
TC18094 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%) 114 7e-26
AV772111 91 1e-18
TC15713 77 2e-14
BP062464 34 0.12
TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-fi... 33 0.20
AV413409 33 0.26
TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, pa... 33 0.26
AV777838 33 0.26
TC10385 33 0.26
AW720113 33 0.34
TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P... 33 0.34
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 33 0.34
TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 33 0.34
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 33 0.34
TC7937 similar to UP|MT2_CICAR (Q39459) Metallothionein-like pro... 33 0.34
TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, ... 33 0.34
AV418552 33 0.34
TC11796 similar to GB|AAP12870.1|30017273|BT006221 At4g35840 {Ar... 32 0.45
>TC18096 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%)
Length = 870
Score = 272 bits (696), Expect = 2e-73
Identities = 149/207 (71%), Positives = 158/207 (75%), Gaps = 12/207 (5%)
Frame = +2
Query: 979 RDADISALVLRFGGECELVWLNDRNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNAG 1038
RDADISALVLRFGGECELVWLND+NALAVFHDPARAATAMRRLDHG VYQGAVS V NAG
Sbjct: 2 RDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGKVYQGAVSVVPNAG 181
Query: 1039 ASAASSVTSAWGGT---KEG----ALRSNPWKKAAVLDPGWKEDSWGDEQWTTAGDSANI 1091
ASAASS T+AWGGT KEG AL+ NPWKKA V + G KEDSWGDE+W T G SANI
Sbjct: 182 ASAASSATNAWGGTGTVKEGGALTALKGNPWKKAVVQEAGRKEDSWGDEEWATTG-SANI 358
Query: 1092 QPSALKKEAPIPASLNPWNVLNHESSSSSSPATVIRSVASGKQTESGNVSTKVEPSAGGA 1151
QPS LKK API ASLN WNVLN ESSSSSS T R+ SGKQ ES VS V + G
Sbjct: 359 QPSVLKKAAPITASLNRWNVLNQESSSSSS-VTTGRAEVSGKQKESSAVSKSVSDAGGSN 535
Query: 1152 D-----GGNSDATEAAEVVDDWEKAFE 1173
+ G NSDA E EVVDDWEKA+E
Sbjct: 536 EEGKQHGDNSDAAEVPEVVDDWEKAYE 616
>AV769433
Length = 454
Score = 213 bits (541), Expect = 2e-55
Identities = 100/157 (63%), Positives = 119/157 (75%)
Frame = -3
Query: 685 NIKCNNPCGRTRQCGLHACGRSCHSPPCDILPGIVKGLRAACGQTCGAPRSGCRHMCMAL 744
+I+CN CG+TR+CGLHACGR+CH PPCD V+G+ +CGQTCGAPR CRHMC+A
Sbjct: 452 DIRCNELCGKTRKCGLHACGRACHPPPCDD-HSTVEGVHGSCGQTCGAPRKDCRHMCIAP 276
Query: 745 CHPGCPCPDARCEFPVTITCSCGRISANVPCDVGGNNSNYNADAIFEASIIQKLPMPLQP 804
CHP PCPD C+F VTI C CGRI+ANVPC GG+ S A+ EASIIQKL LQP
Sbjct: 275 CHPSFPCPDIICQFQVTIACFCGRITANVPCYAGGSRSR----ALHEASIIQKL--LLQP 114
Query: 805 VDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDIT 841
+D N +K PLGQRKLMC++EC K ERK+VLA AF+IT
Sbjct: 113 LDGNDKKSPLGQRKLMCNDECFKWERKKVLARAFEIT 3
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/119 (26%), Positives = 45/119 (36%)
Frame = -3
Query: 482 CSKVCSKTLRCGVHACKETCHVGECPPCKVLISQKCRCGSTSRTVECYKTTENQKFTCQK 541
C+++C KT +CG+HAC CH PPC + + T E +C +
Sbjct: 443 CNELCGKTRKCGLHACGRACHP---PPC-----------------DDHSTVEGVHGSCGQ 324
Query: 542 PCGAKKNCGRHRCSEKCCPLSGPNNGLTTPDWDPHFCSMLCGKKLRCGQHVCETLCHSG 600
CGA + RH C C P PD C CG+ C++G
Sbjct: 323 TCGAPRKDCRHMCIAPCHP------SFPCPD---IICQFQVTIACFCGRITANVPCYAG 174
Score = 50.1 bits (118), Expect = 2e-06
Identities = 33/112 (29%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Frame = -3
Query: 357 DLTCGQRCDKLLDCGRHHCENACHVGPCDPCQVLIEASCFCSKMTQVLFCGEMAMKGEFE 416
D+ C + C K CG H C ACH PCD +
Sbjct: 452 DIRCNELCGKTRKCGLHACGRACHPPPCDDHSTV-------------------------- 351
Query: 417 AEGGVFSCGSNCGNVLGCSNHICREVCHPG-SCGE--CEFLPSRVKACCCGK 465
EG SCG CG H+C CHP C + C+F AC CG+
Sbjct: 350 -EGVHGSCGQTCGAPRKDCRHMCIAPCHPSFPCPDIICQF--QVTIACFCGR 204
Score = 46.2 bits (108), Expect = 3e-05
Identities = 33/105 (31%), Positives = 41/105 (38%), Gaps = 1/105 (0%)
Frame = -3
Query: 578 CSMLCGKKLRCGQHVCETLCHSGHCPPCLE-TIFTDLACACGMTSIPPPLPCGTMPPLCQ 636
C+ LCGK +CG H C CH PPC + + + +CG T P C M C
Sbjct: 443 CNELCGKTRKCGLHACGRACHP---PPCDDHSTVEGVHGSCGQTCGAPRKDCRHM---CI 282
Query: 637 LPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPC 681
PC PC C V+ C G I N+PC
Sbjct: 281 APCHPSFPCPDI-----------ICQFQVTIACFCGR-ITANVPC 183
Score = 43.9 bits (102), Expect = 1e-04
Identities = 26/109 (23%), Positives = 35/109 (31%), Gaps = 3/109 (2%)
Frame = -3
Query: 424 CGSNCGNVLGCSNHICREVCHPGSCGECEFLPSRVKACCCGKTKLEDERKSCVDPIPTCS 483
C CG C H C CHP C D+ + +C
Sbjct: 443 CNELCGKTRKCGLHACGRACHPPPC---------------------DDHSTVEGVHGSCG 327
Query: 484 KVCSKTLRCGVHACKETCHVG-ECPP--CKVLISQKCRCGSTSRTVECY 529
+ C + H C CH CP C+ ++ C CG + V CY
Sbjct: 326 QTCGAPRKDCRHMCIAPCHPSFPCPDIICQFQVTIACFCGRITANVPCY 180
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/123 (29%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Frame = -3
Query: 292 CGEPCGKPLEKEVFVTEERKDELCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRC 351
C E CGK RK L HAC CHP PC
Sbjct: 443 CNELCGKT----------RKCGL--HACGRACHPPPC----------------------- 369
Query: 352 SDRQSDL-----TCGQRCDKLLDCGRHHCENACHVG-PCDP--CQVLIEASCFCSKMTQV 403
D S + +CGQ C RH C CH PC CQ + +CFC ++T
Sbjct: 368 -DDHSTVEGVHGSCGQTCGAPRKDCRHMCIAPCHPSFPCPDIICQFQVTIACFCGRITAN 192
Query: 404 LFC 406
+ C
Sbjct: 191 VPC 183
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/78 (35%), Positives = 34/78 (42%), Gaps = 8/78 (10%)
Frame = -3
Query: 275 CGKRVDPP-----SDLYLTPHSCGEPCGKPLEKEVFVTEERKDELCPHACVLQCHPG-PC 328
CG+ PP S + SCG+ CG P RKD C H C+ CHP PC
Sbjct: 398 CGRACHPPPCDDHSTVEGVHGSCGQTCGAP----------RKD--CRHMCIAPCHPSFPC 255
Query: 329 PP--CKAFAPPRLCPCGK 344
P C+ F C CG+
Sbjct: 254 PDIICQ-FQVTIACFCGR 204
>TC18094 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%)
Length = 430
Score = 114 bits (286), Expect = 7e-26
Identities = 55/109 (50%), Positives = 70/109 (63%)
Frame = +1
Query: 138 REHVAHRVEREHVAHRVEREHVAHRVERGRGRSGNMAGRQYGSRDSSLPQLVQEIQEKLT 197
R+ RV+R + H ++ + R + +LP L+QEIQ+KLT
Sbjct: 97 RDDRYRRVQRVRNPASTKNNHCQTQLHENGDVGCSNPPRSRCEEEENLPHLLQEIQDKLT 276
Query: 198 KGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAE 246
K VECMICYD V RSAP+WSCSSCYSIFHL+C+KKWARAP+S+DLS E
Sbjct: 277 KDDVECMICYDKVCRSAPVWSCSSCYSIFHLHCVKKWARAPSSIDLSVE 423
>AV772111
Length = 423
Score = 90.9 bits (224), Expect = 1e-18
Identities = 41/108 (37%), Positives = 55/108 (49%)
Frame = -3
Query: 513 ISQKCRCGSTSRTVECYKTTENQKFTCQKPCGAKKNCGRHRCSEKCCPLSGPNNGLTTPD 572
+ + CRCGS + V CY Q TC + C ++CGRH C +CC D
Sbjct: 421 VRKSCRCGSLKQDVPCY-----QDLTCDRKCQTMRDCGRHACKRRCC------------D 293
Query: 573 WDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLACACGMT 620
D C+ +CG++LRC H C + CH G C PC I ++CACG T
Sbjct: 292 GDCPPCAEICGRRLRCKSHKCPSPCHRGACAPC--PIMVTISCACGET 155
Score = 65.1 bits (157), Expect = 6e-11
Identities = 36/130 (27%), Positives = 48/130 (36%)
Frame = -3
Query: 340 CPCGKKRIATRCSDRQSDLTCGQRCDKLLDCGRHHCENACHVGPCDPCQVLIEASCFCSK 399
C CG + C DLTC ++C + DCGRH C+ C G C PC +
Sbjct: 409 CRCGSLKQDVPC---YQDLTCDRKCQTMRDCGRHACKRRCCDGDCPPCAEI--------- 266
Query: 400 MTQVLFCGEMAMKGEFEAEGGVFSCGSNCGNVLGCSNHICREVCHPGSCGECEFLPSRVK 459
CG L C +H C CH G+C C + +
Sbjct: 265 ----------------------------CGRRLRCKSHKCPSPCHRGACAPCPIMVT--I 176
Query: 460 ACCCGKTKLE 469
+C CG+T E
Sbjct: 175 SCACGETHSE 146
Score = 63.5 bits (153), Expect = 2e-10
Identities = 32/136 (23%), Positives = 47/136 (34%)
Frame = -3
Query: 391 IEASCFCSKMTQVLFCGEMAMKGEFEAEGGVFSCGSNCGNVLGCSNHICREVCHPGSCGE 450
+ SC C + Q + C + +C C + C H C+ C G C
Sbjct: 421 VRKSCRCGSLKQDVPCYQD------------LTCDRKCQTMRDCGRHACKRRCCDGDC-- 284
Query: 451 CEFLPSRVKACCCGKTKLEDERKSCVDPIPTCSKVCSKTLRCGVHACKETCHVGECPPCK 510
P C+++C + LRC H C CH G C PC
Sbjct: 283 -----------------------------PPCAEICGRRLRCKSHKCPSPCHRGACAPCP 191
Query: 511 VLISQKCRCGSTSRTV 526
++++ C CG T V
Sbjct: 190 IMVTISCACGETHSEV 143
Score = 58.2 bits (139), Expect = 8e-09
Identities = 36/109 (33%), Positives = 48/109 (44%)
Frame = -3
Query: 665 VSKECVGGHVILRNIPCGSNNIKCNNPCGRTRQCGLHACGRSCHSPPCDILPGIVKGLRA 724
V K C G + +++PC ++ C+ C R CG HAC R C CD G
Sbjct: 421 VRKSCRCGS-LKQDVPC-YQDLTCDRKCQTMRDCGRHACKRRC----CD-------GDCP 281
Query: 725 ACGQTCGAPRSGCRHMCMALCHPGCPCPDARCEFPVTITCSCGRISANV 773
C + CG H C + CH G P C VTI+C+CG + V
Sbjct: 280 PCAEICGRRLRCKSHKCPSPCHRGACAP---CPIMVTISCACGETHSEV 143
Score = 53.9 bits (128), Expect = 1e-07
Identities = 25/72 (34%), Positives = 35/72 (47%)
Frame = -3
Query: 459 KACCCGKTKLEDERKSCVDPIPTCSKVCSKTLRCGVHACKETCHVGECPPCKVLISQKCR 518
K+C CG K + C + TC + C CG HACK C G+CPPC + ++ R
Sbjct: 415 KSCRCGSLKQD---VPCYQDL-TCDRKCQTMRDCGRHACKRRCCDGDCPPCAEICGRRLR 248
Query: 519 CGSTSRTVECYK 530
C S C++
Sbjct: 247 CKSHKCPSPCHR 212
Score = 51.2 bits (121), Expect = 9e-07
Identities = 20/58 (34%), Positives = 28/58 (47%)
Frame = -3
Query: 342 CGKKRIATRCSDRQSDLTCGQRCDKLLDCGRHHCENACHVGPCDPCQVLIEASCFCSK 399
CG+ RC D C + C + L C H C + CH G C PC +++ SC C +
Sbjct: 328 CGRHACKRRCCDGDCP-PCAEICGRRLRCKSHKCPSPCHRGACAPCPIMVTISCACGE 158
>TC15713
Length = 493
Score = 76.6 bits (187), Expect = 2e-14
Identities = 56/137 (40%), Positives = 69/137 (49%), Gaps = 5/137 (3%)
Frame = +1
Query: 1042 ASSVTSAWG----GTKEGALRSNPWKKAAVLDPGWKEDSWGDEQWTTAGDSANIQPSALK 1097
+S V +AWG G + N WK GW ED E T NIQP+ K
Sbjct: 10 SSVVKNAWGVSGGAMNGGETKGNSWKNVV----GWGED----EDLVT-----NIQPTMWK 150
Query: 1098 K-EAPIPASLNPWNVLNHESSSSSSPATVIRSVASGKQTESGNVSTKVEPSAGGADGGNS 1156
K EAPI ASLNPW+VL+ SSSSS + + S K TES ++ GGN
Sbjct: 151 KLEAPISASLNPWSVLDQVSSSSS----*VEAEVSRKHTESNVITHDGGSYLEVLHGGNF 318
Query: 1157 DATEAAEVVDDWEKAFE 1173
DA E +V+DDWEK F+
Sbjct: 319 DA*EVYDVIDDWEKTFD 369
>BP062464
Length = 401
Score = 34.3 bits (77), Expect = 0.12
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 18 HRPPRQEWIP-----KGAGASSSASTTSTTTTASTTTAAAATTTVDQPTS 62
H PP Q W+P S S+ ++ T S + AAATTT + PTS
Sbjct: 205 HSPPLQPWLPLLFFPSSLQPLSFPSSNASNTPPSNPSPAAATTTANLPTS 354
>TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-finger,
complete
Length = 2092
Score = 33.5 bits (75), Expect = 0.20
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 203 CMICYDMVRRSAPIWSCSSCYSIFHLNCIKKW 234
C+IC + + + + +C +H+NCIKKW
Sbjct: 1784 CVICLEEYKNMDDVGTLKTCGHDYHVNCIKKW 1879
>AV413409
Length = 374
Score = 33.1 bits (74), Expect = 0.26
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 195 KLTKGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKW 234
K+ KG +EC +C + + + C +FH CI +W
Sbjct: 25 KIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEW 144
>TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, partial (7%)
Length = 951
Score = 33.1 bits (74), Expect = 0.26
Identities = 19/77 (24%), Positives = 32/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 203 CMICYDMVRRSAPIWSCSSCYSIFHLNCIKK-WARAPTSVDLSAEKNLGFNWRCPGCQSV 261
C +C + + + C +C + +H C+ AR P NW CP C
Sbjct: 115 CKVC-GLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEG-----------NWYCPSCVDG 258
Query: 262 QHTSSKDIKYACFCGKR 278
+H + I+++ GKR
Sbjct: 259 KHATQNVIEHSQIIGKR 309
>AV777838
Length = 565
Score = 33.1 bits (74), Expect = 0.26
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 27 PKGAGASSSASTTSTTTTASTTTAAAATTTVDQP-----TSLHSHEKNTNSDGGSSNQGA 81
P + +SSS+S++S+++++S AA TT+ P +S+ + +T + SS++
Sbjct: 214 PSSSSSSSSSSSSSSSSSSSMRATAAGHTTITAPPSSSSSSMRATAGHTITSSSSSHEPK 393
Query: 82 VVAPTFARHRSNHH 95
P R +HH
Sbjct: 394 GQPPWPPRGSHHHH 435
>TC10385
Length = 614
Score = 33.1 bits (74), Expect = 0.26
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 13 SRFPSHRPPRQEWIPKGAGASSSASTTSTTTTASTTTAAAATTTVDQPTSL 63
+R+ S PP + P GAS+ + +S+TTTAS ++ +A T+ + S+
Sbjct: 275 ARYCSKAPPPRRIFPPHPGASTDPTDSSSTTTASISSFSAWTSGISNIASV 123
>AW720113
Length = 512
Score = 32.7 bits (73), Expect = 0.34
Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 6/43 (13%)
Frame = +3
Query: 16 PSHRPP------RQEWIPKGAGASSSASTTSTTTTASTTTAAA 52
P H PP IP + SS+ + T+TTTT +TTTA A
Sbjct: 42 PLHTPPSDP*NTNNHRIPPFSARSSTTAATTTTTTTTTTTATA 170
Score = 31.2 bits (69), Expect = 1.0
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 17 SHRPPRQEWIPKGAGASSSASTTSTTTTASTTTAAAATTTV 57
+HR P P A +S++A+TT+TTTT TTT A AT +
Sbjct: 81 NHRIP-----PFSARSSTTAATTTTTTT--TTTTATATAAI 182
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 33 SSSASTTSTTTTASTTTAAAATTTVDQP 60
S+ +STT+ TTT +TTT AT T P
Sbjct: 102 SARSSTTAATTTTTTTTTTTATATAAIP 185
>TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;}, partial (59%)
Length = 1474
Score = 32.7 bits (73), Expect = 0.34
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 361 GQRCDKLLDCGRHHCENACHVGPCDPCQVLIEASCFCSKMTQVL 404
G+ C K C C N V CD C + + S FCS + +L
Sbjct: 1183 GRNCQKFT*CTVLFCVNGWEVVECDQCALTVGLSFFCSGLWDLL 1314
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 32.7 bits (73), Expect = 0.34
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 8/78 (10%)
Frame = +2
Query: 16 PSHRPPRQEWIPKGA-GASSSASTTSTTTTAS-------TTTAAAATTTVDQPTSLHSHE 67
PSH PP P+ A G +SS ST S T S +TT+A ++ T +S S
Sbjct: 125 PSHAPPTPPISPRAAPGKNSSPSTPSPALTPSAKPPSA*STTSATSSATTPWSSSSSSSS 304
Query: 68 KNTNSDGGSSNQGAVVAP 85
++ + SS+ +P
Sbjct: 305 PSSGTPSPSSSSSPSSSP 358
>TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (27%)
Length = 793
Score = 32.7 bits (73), Expect = 0.34
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 195 KLTKGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKW 234
K+ + T+EC +C + R + C +FH C+ W
Sbjct: 2 KIGRATLECAVCLNEFRDHETLRLIPKCSHVFHAECVDAW 121
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 32.7 bits (73), Expect = 0.34
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 30 AGASSSASTTSTTTT-ASTTTAAAATTTVDQPTSLHSHEKNTNSDGGSSNQGAVVAPT 86
A A+++A+TT+TTTT + TT AAAT+T + T S ++ A A T
Sbjct: 13 ATAAAAATTTATTTTYPAPTTTAAATSTSPTAAAFPDAAATTPSTSATTTLAAAAAAT 186
Score = 28.5 bits (62), Expect = 6.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 32 ASSSASTTSTTTTASTTTAAAATTT 56
A+S+ + + TTTA+TTT A TTT
Sbjct: 4 ATSATAAAAATTTATTTTYPAPTTT 78
>TC7937 similar to UP|MT2_CICAR (Q39459) Metallothionein-like protein 2
(MT-2), partial (97%)
Length = 674
Score = 32.7 bits (73), Expect = 0.34
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +1
Query: 369 DCGRHHCENACHVGP-CDPCQVLIEASCFCSKMTQVLFCGEMAMKGEFE--------AEG 419
+CG C ++C G C C++ + S S T+ L G +K + E AE
Sbjct: 100 NCG---CGSSCKCGSGCGGCKMYPDMSYTESTTTETLIMGVAPVKAQLEGAEMGVAAAEN 270
Query: 420 GVFSCGSNC 428
G CGSNC
Sbjct: 271 GGCKCGSNC 297
>TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial
(13%)
Length = 611
Score = 32.7 bits (73), Expect = 0.34
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = -1
Query: 25 WIPKGAGASSSASTTSTTTTASTTTAAAATTTVDQPTSLHSH 66
W+ A SSS TT++ TT +T +A AT+TV T+ H
Sbjct: 158 WLGTIASPSSSPETTTSATTKATASATIATSTVPTITTTIFH 33
>AV418552
Length = 386
Score = 32.7 bits (73), Expect = 0.34
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +1
Query: 32 ASSSASTTSTTTTASTTTAAAATTTVDQPTSLHSHEKNTNSDGGSSNQGAVVAPTFARH 90
A+++A+ T+ T TA TTT AAAT T PT+ + T + + GA T + H
Sbjct: 130 AATAAAPTTATCTAPTTTLAAATYTA--PTAATNTAPTTTTCTTPTTTGAAATYTTSTH 300
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/61 (32%), Positives = 30/61 (48%)
Frame = +1
Query: 32 ASSSASTTSTTTTASTTTAAAATTTVDQPTSLHSHEKNTNSDGGSSNQGAVVAPTFARHR 91
A+++ + T+TT T TTT AAAT T TS H+ T + S + + R+
Sbjct: 214 AATNTAPTTTTCTTPTTTGAAATYT----TSTHTTPATTLAAAAVSTTSSASTDGWGRNG 381
Query: 92 S 92
S
Sbjct: 382 S 384
>TC11796 similar to GB|AAP12870.1|30017273|BT006221 At4g35840 {Arabidopsis
thaliana;}, partial (86%)
Length = 1114
Score = 32.3 bits (72), Expect = 0.45
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = +1
Query: 201 VECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKW 234
V C +C + + S C+ +FHL CI KW
Sbjct: 604 VSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKW 705
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,922,581
Number of Sequences: 28460
Number of extensions: 643032
Number of successful extensions: 4830
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 4102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4638
length of query: 1173
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1073
effective length of database: 2,051,600
effective search space: 2201366800
effective search space used: 2201366800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC141436.6