BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141436.5 + phase: 0 /pseudo
(364 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE122611 51 1e-12
AV411435 64 3e-11
BP076564 60 6e-10
AV780445 42 5e-08
BP068806 44 4e-05
AV412895 42 2e-04
TC11323 41 3e-04
CB826728 40 5e-04
BP041113 40 6e-04
BI418523 40 8e-04
TC13560 39 0.002
AV414192 38 0.002
CN825238 38 0.003
TC11605 37 0.004
BP033684 37 0.005
AV428268 37 0.005
AV780250 35 0.026
AV426428 35 0.026
BP056414 34 0.034
AU089037 33 0.058
>BE122611
Length = 357
Score = 51.2 bits (121), Expect(2) = 1e-12
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = -3
Query: 14 IWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMHGNLP 73
+WT G YS KS Y L + G + W +WK + PE ++ F+WL LP
Sbjct: 322 LWTEESNGCYSAKSTYNLLIED-----GGNESRFWSLVWKANAPEKVRFFLWLVGRNALP 158
Query: 74 TNAFRAGKHLT 84
+NA R H+T
Sbjct: 157 SNARR--HHIT 131
Score = 38.1 bits (87), Expect(2) = 1e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 78 RAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW 113
+A HL S ++C RCGA E H FR CP S +W
Sbjct: 146 KAPYHLASSAACIRCGAPSEDANHVFRWCPGSAWMW 39
>AV411435
Length = 426
Score = 64.3 bits (155), Expect = 3e-11
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Frame = +3
Query: 1 QSIFIDESSQDIKIWTHSPTGMYSVKSGY------QWLTSNCLSFAGQTQQETWQWIWKL 54
Q+ F S+D W P+G YSVKSGY Q+ SN S + W IW
Sbjct: 9 QTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGA 188
Query: 55 HLPENLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW 113
+P+ ++ F+W A + +P +++ D C C E + H C + A+W
Sbjct: 189 QVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW 365
>BP076564
Length = 371
Score = 60.1 bits (144), Expect = 6e-10
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = +2
Query: 54 LHLPENLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW 113
L + E K + L +H LP NA R + + C RC A+++ +LH +DCP S +W
Sbjct: 56 LKVVEKCKFMVGLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVW 235
Query: 114 DDLLFNKDTNFNSQDFNWWFKHYALALNGNIFVITCWVLWKARNH 158
+ L + F S D W N + W +W+ RN+
Sbjct: 236 NRLGCSSFGGFLSSDGWSWLLSIMKQPNVEKLIYILWWIWR*RNN 370
>AV780445
Length = 504
Score = 42.4 bits (98), Expect(2) = 5e-08
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +1
Query: 150 WVLWKARNHKVFNGNDWVCLSHIYSL---HSDVVAHISNDVIQKPIK*V--KWIPPLDNI 204
W +WK RN+ VF + W L H + + D P + +W PP
Sbjct: 238 W*VWKWRNNMVFEDSPWSVDEAWRKLGHEHDEFITFSDGDA-GDPGSWLSSRWQPPRQGT 414
Query: 205 IKVNVDGISLSNHGRSVFGGLIRNNNGDWL 234
+K+NVDG GGLIR++ G WL
Sbjct: 415 VKLNVDGSGREQDRCMGAGGLIRDDQGKWL 504
Score = 30.8 bits (68), Expect(2) = 5e-08
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +2
Query: 91 RCGASIESLLHTFRDCPLSLAIWDDLLFNKDTNFNSQDFNWWFKHYALAL 140
RC A E + H RDCP S IW L TN D W L +
Sbjct: 65 RCPAPEEDI*HCLRDCPHSQEIWLRLGAWAWTNLGVGDHRSWISSLELGI 214
>BP068806
Length = 418
Score = 43.9 bits (102), Expect = 4e-05
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 56 LPENLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW 113
+PE ++ ++W M G + N+FR L + + RC E + H RDC ++ +W
Sbjct: 150 VPEKIRVWVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDVW 323
>AV412895
Length = 405
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = +1
Query: 21 GMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMHGNLPTN---AF 77
G +SV S + +L L + + IW + P N+K F+W + G + T
Sbjct: 4 GGFSVNSSFVFL*DQYL----EEPDPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLK 171
Query: 78 RAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW 113
R H D+ C CG + ES H C S+ IW
Sbjct: 172 RQVIHNALDAICPLCGLAEESGSHLLFSCAESMLIW 279
>TC11323
Length = 657
Score = 41.2 bits (95), Expect = 3e-04
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +2
Query: 196 KWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGF 237
+W+ P+ K+N DG SL N G + GGL+R+ + +++ GF
Sbjct: 2 RWLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGF 127
>CB826728
Length = 509
Score = 40.4 bits (93), Expect = 5e-04
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Frame = +1
Query: 15 WTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQET------WQWIWKLHLPENLKHFIWLAM 68
W S G YS KSGY+++ S T W+ +W K +W A
Sbjct: 214 WPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMWRAC 393
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDC 106
G LP + + L D S G E+ +H C
Sbjct: 394 AGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507
>BP041113
Length = 503
Score = 40.0 bits (92), Expect = 6e-04
Identities = 28/102 (27%), Positives = 46/102 (44%), Gaps = 3/102 (2%)
Frame = +1
Query: 3 IFIDESSQDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKH 62
+ + E +D +W P G Y+V S Y +L + L+ + IW+ P ++K
Sbjct: 205 VCLSEGVEDKWLWL--PGGTYTVNSAYSFLQAPTLA----DTDPIFATIWRTVAP-SVKA 363
Query: 63 FIWLAMHGNLPTNAFRAGKHLTSDSS---CKRCGASIESLLH 101
F W + G LPT + + D + CK C +ES+ H
Sbjct: 364 FAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTH 489
>BI418523
Length = 496
Score = 39.7 bits (91), Expect = 8e-04
Identities = 22/49 (44%), Positives = 27/49 (54%)
Frame = +1
Query: 190 KPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGFF 238
KP + W PP IK NVDG S N G S GG+ R+ N +LG+F
Sbjct: 166 KPPRCWSWSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRK-ILGYF 309
>TC13560
Length = 571
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/60 (38%), Positives = 33/60 (54%)
Frame = +2
Query: 182 HISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGFFMDF 241
H S D Q WI P +K+NVDG ++SN ++ G++RN +G WL GF +F
Sbjct: 101 HESFDCSQTQNTSSDWIKPDAGWVKINVDG-AVSNCLQASCRGVLRNADGSWLKGFRWNF 277
>AV414192
Length = 160
Score = 38.1 bits (87), Expect = 0.002
Identities = 13/29 (44%), Positives = 21/29 (71%)
Frame = +3
Query: 4 FIDESSQDIKIWTHSPTGMYSVKSGYQWL 32
++D+S D ++W +G+YS +SGYQWL
Sbjct: 15 WLDDSMTDCQVWRGDMSGLYSTRSGYQWL 101
>CN825238
Length = 692
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/91 (21%), Positives = 37/91 (39%), Gaps = 3/91 (3%)
Frame = +3
Query: 14 IWTHSPTGMYSVKSGYQ--WLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMHGN 71
+W S G +SV+S Y + + + W+ +W+ +P +KHF +
Sbjct: 417 LWRWSRNGAFSVRSAYYNIQVAKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAYRVARNI 596
Query: 72 LPTNAFRAGKHLTSDSSCKRCGASI-ESLLH 101
+P + + + C C I ES+ H
Sbjct: 597 IPCRENLQRRGIAVQNECPTCNHQIPESMSH 689
>TC11605
Length = 546
Score = 37.4 bits (85), Expect = 0.004
Identities = 22/62 (35%), Positives = 33/62 (52%)
Frame = +3
Query: 197 WIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGFFMDFVVLLLAWRPNCMPFF 256
W PP NI+K NVDG + + G S GG++RN +LG F + +L A++
Sbjct: 348 WCPPEANILKFNVDGSARGSPGISGAGGILRNAESA-VLGRFSKPLGVLCAYQAEVKAIL 524
Query: 257 MA 258
+A
Sbjct: 525 LA 530
Score = 26.6 bits (57), Expect = 7.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 150 WVLWKARNHKVFNGNDWVCLSHIYSLH 176
W +W ARN VFN +++ +++ LH
Sbjct: 145 WSIWLARNDLVFNQKEFI-YENVWDLH 222
>BP033684
Length = 557
Score = 37.0 bits (84), Expect = 0.005
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Frame = -1
Query: 150 WVLWKARNHKVFNGND----------------WV------CLSHIYSLHSDVVAHISNDV 187
W LW R VF G W+ C + H D +
Sbjct: 491 WSLWLERKQSVFKGKLASSQEVWDLHLMTIFWWIKAVWKECPYNFDQFHRDFCMLSFKKL 312
Query: 188 IQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGFF 238
I K + W PP I+K NVDG S N G S GG++ + +LGFF
Sbjct: 311 IPKQ-RLKGWTPPSRGILKFNVDGASQGNPGPSGVGGVLCDYR-SMVLGFF 165
>AV428268
Length = 429
Score = 37.0 bits (84), Expect = 0.005
Identities = 23/94 (24%), Positives = 36/94 (37%)
Frame = +3
Query: 23 YSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMHGNLPTNAFRAGKH 82
YSVKS Y +L C A ++ +W + +P N W + + T +
Sbjct: 6 YSVKSAYDFL-HGC---ANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRG 173
Query: 83 LTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDL 116
+ + C C ES H CP+ IW +
Sbjct: 174 VVISNVCPLCSLDEESTDHLLFSCPIV*RIWSKI 275
>AV780250
Length = 494
Score = 34.7 bits (78), Expect = 0.026
Identities = 24/105 (22%), Positives = 38/105 (35%), Gaps = 2/105 (1%)
Frame = +3
Query: 11 DIKIWTHSPTGMYSVKSGYQWLTSNCLSF--AGQTQQETWQWIWKLHLPENLKHFIWLAM 68
D+ W H+ G Y+ KSGY + + + + T + +WK + I A
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKAPTLPRCRELIGRAF 353
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW 113
LPT + + + D C C ES P+ W
Sbjct: 354 LKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWW 488
>AV426428
Length = 413
Score = 34.7 bits (78), Expect = 0.026
Identities = 29/113 (25%), Positives = 40/113 (34%), Gaps = 2/113 (1%)
Frame = +3
Query: 51 IWKLHLPENLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSL 110
+WK W A G LP A + L D C RC A+ ++ H CP
Sbjct: 54 LWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VH 233
Query: 111 AIW--DDLLFNKDTNFNSQDFNWWFKHYALALNGNIFVITCWVLWKARNHKVF 161
IW L F + +F F A F+ + +W A+N F
Sbjct: 234 PIWFASSLGFRLNQECKMHEFVADFMQVAD*DTCGEFLTILYAIWTAQNELCF 392
>BP056414
Length = 606
Score = 34.3 bits (77), Expect = 0.034
Identities = 19/48 (39%), Positives = 26/48 (53%)
Frame = -3
Query: 197 WIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGFFMDFVVL 244
W P + KVNVDG +LS ++ GG++R+ G W GF VL
Sbjct: 562 WTRPPEGWFKVNVDG-ALSGDLQASCGGVVRDAAGSWSKGFARSLGVL 422
>AU089037
Length = 245
Score = 33.5 bits (75), Expect = 0.058
Identities = 18/67 (26%), Positives = 27/67 (39%), Gaps = 3/67 (4%)
Frame = -1
Query: 46 ETWQWIWKLHLPENLKHFIWLAMHGNLPTNAFRAGKHLTSDSS---CKRCGASIESLLHT 102
+ +Q +WK+ P N F W + + T + + S C C ES H
Sbjct: 206 DIFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHL 27
Query: 103 FRDCPLS 109
F CPL+
Sbjct: 26 FFSCPLA 6
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.337 0.147 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,512,023
Number of Sequences: 28460
Number of extensions: 150592
Number of successful extensions: 1401
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of query: 364
length of database: 4,897,600
effective HSP length: 91
effective length of query: 273
effective length of database: 2,307,740
effective search space: 630013020
effective search space used: 630013020
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC141436.5