TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141414.5 - phase: 0 /pseudo
         (689 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8734 similar to UP|Q93YF5 (Q93YF5) SET-domain-containing prote...    28  3.7
BI419476                                                               28  4.9
TC14106 similar to UP|Q42966 (Q42966) Nitrilase  , partial (87%)       28  6.4
TC10329                                                                28  6.4
TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein...    28  6.4
AV410786                                                               27  8.3
TC16840 homologue to UP|Q9SHZ4 (Q9SHZ4) At2g22120 protein, parti...    27  8.3

>TC8734 similar to UP|Q93YF5 (Q93YF5) SET-domain-containing protein,
           partial (13%)
          Length = 804

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 416 SYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKW 450
           +YDW      S AV+H   +  ++   CC+ KG+W
Sbjct: 258 TYDWTP*HIWSAAVIHKPSNVPFIP--CCYVKGRW 160


>BI419476 
          Length = 520

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 15/47 (31%), Positives = 28/47 (58%)
 Frame = +3

Query: 53  DNDDLIVSFCSGEVRVLTSEIVKLIPLDRGQHVQLKGDVNEPRFGWR 99
           DN+DLI+ + SG++R      V+++P DR +    + D ++ R  +R
Sbjct: 327 DNEDLILGYVSGKIR---KNFVRILPGDRVKVEVSRYDSSKGRIVYR 458


>TC14106 similar to UP|Q42966 (Q42966) Nitrilase  , partial (87%)
          Length = 1286

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 9    VHLSPITFDVLDWVKFKRTVTEPKHGWQGAK 39
            +HL+     ++ W KFK T T PK+   G K
Sbjct: 1284 LHLNQTNIFLISWYKFKSTSTYPKYNVFGYK 1192


>TC10329 
          Length = 775

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 179 DSSLLVELSYVQNPWHC 195
           D  L++E+S++  PWHC
Sbjct: 14  DRDLIIEVSHLVTPWHC 64


>TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein B13-1-9,
           partial (53%)
          Length = 969

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = -3

Query: 89  GDVNEPRFGWRGQSRDSIG 107
           GDV  P  GWRG+SR  +G
Sbjct: 133 GDVAAPAEGWRGRSRHRLG 77


>AV410786 
          Length = 255

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = -2

Query: 176 IRPDSSLLVELSYVQNPWHCEPEEIEHVPPFRNL 209
           + PD +L   L   Q+P H  P EI    P+ NL
Sbjct: 134 VNPDMALARALLSQQSPLHDHPHEIYKPSPYHNL 33


>TC16840 homologue to UP|Q9SHZ4 (Q9SHZ4) At2g22120 protein, partial (39%)
          Length = 576

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +3

Query: 241 PYHGKLIHLIWRRWKILR*QFFWLMLIICFHFTEIRLEIGSE*KLQYLLQNMDG 294
           PYH ++     R+W+ L+ +FF +   I F F  ++L I S   L YL+  +DG
Sbjct: 420 PYHLRVHVAADRKWRTLKFRFF-VTRDILFIFLAVQLIIAS---LAYLVYLIDG 569


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.144    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,583,403
Number of Sequences: 28460
Number of extensions: 227952
Number of successful extensions: 1254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of query: 689
length of database: 4,897,600
effective HSP length: 97
effective length of query: 592
effective length of database: 2,136,980
effective search space: 1265092160
effective search space used: 1265092160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)