
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141414.11 - phase: 0
(857 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP056980 126 1e-29
BP043658 75 3e-14
AV407363 70 1e-12
TC13431 57 9e-09
AV424955 56 2e-08
BP036259 54 1e-07
TC18486 similar to UP|Q9LZQ9 (Q9LZQ9) ATP-dependent RNA helicase... 54 1e-07
AW428847 44 1e-04
TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro prote... 34 0.086
TC9250 UP|Q9FLP6 (Q9FLP6) Ubiquitin-like protein SMT3-like (AT5g... 34 0.086
TC14940 32 0.43
TC11949 32 0.43
AI967596 32 0.56
TC12598 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, part... 31 0.95
TC18894 31 0.95
TC12743 weakly similar to UP|Q9LM77 (Q9LM77) F2D10.26, partial (... 30 1.6
BP055954 30 1.6
TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing... 29 2.8
TC11793 similar to UP|AAR99376 (AAR99376) Ring domain containing... 29 3.6
AV419203 28 4.7
>BP056980
Length = 451
Score = 126 bits (317), Expect = 1e-29
Identities = 48/70 (68%), Positives = 62/70 (88%)
Frame = -1
Query: 787 KDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIECKCGKHICWVCLEFFTTSGECY 846
K+DPD SL++WC+GKE VK+C ACG+VIEKVDGC+H+EC+CGKH+CWVCLE F +S ECY
Sbjct: 451 KEDPDLSLKEWCQGKEPVKSCSACGYVIEKVDGCHHVECQCGKHVCWVCLEIFLSSDECY 272
Query: 847 SHMDTIHLGV 856
+H+ TIHL +
Sbjct: 271 NHLRTIHLAI 242
>BP043658
Length = 438
Score = 75.5 bits (184), Expect = 3e-14
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 4 QITVLIGETGSGKSTQLVQFLADSGVGANESIV-CTQPRRIAAKSLAERVREESGGCYED 62
Q+ V++GETGSGKSTQL Q+L + G IV CTQPRR+AA S+A+RV EE D
Sbjct: 115 QVVVVVGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGD 294
Query: 63 SSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSDKNFTGISCIIVDEAH 111
+ F ++ I +MTD LL+ + D + I++DEAH
Sbjct: 295 -QVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH 438
>AV407363
Length = 425
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/99 (39%), Positives = 59/99 (59%)
Frame = +3
Query: 26 DSGVGANESIVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRIIFMT 85
+SG GA SI+CTQPRRI+A +++ERV E G +S + ++ ++F T
Sbjct: 9 ESGRGAFCSIICTQPRRISAMAVSERVSAERGEPLGES-VGFKVRLEGMKGKNTHLLFCT 185
Query: 86 DHCLLQHYMSDKNFTGISCIIVDEAHERSINTDLLLALV 124
LL+ +SD+N GI+ + VDE HER +N D LL ++
Sbjct: 186 SGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVL 302
>TC13431
Length = 552
Score = 57.4 bits (137), Expect = 9e-09
Identities = 24/98 (24%), Positives = 49/98 (49%), Gaps = 5/98 (5%)
Frame = +3
Query: 759 CGACYSETCTRCHIEYHPYVSCERYRQF-----KDDPDSSLRDWCKGKEQVKNCPACGHV 813
C +C+ C +C + +H ++CE +++ ++D + K K+ + CP C
Sbjct: 15 CPSCHRLFCAQCMVPWHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKRKKW-QRCPKCSFY 191
Query: 814 IEKVDGCNHIECKCGKHICWVCLEFFTTSGECYSHMDT 851
+++ GC H++C+CG + C+ C + + C H T
Sbjct: 192 VQRRSGCEHMKCRCGCNFCYECGKDWKHGHICDKHNST 305
>AV424955
Length = 320
Score = 56.2 bits (134), Expect = 2e-08
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = +1
Query: 35 IVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYM 94
+ CTQPRR+AA S++ RV EE + + F + + + ++TD LL+ M
Sbjct: 34 VACTQPRRVAAMSVSRRVAEEMDVTIGEE-VGYSIRFEDCSSAKTVLKYLTDGMLLREAM 210
Query: 95 SDKNFTGISCIIVDEAHERSINTDLLLALV 124
+D II+DEAHER++ TD+L L+
Sbjct: 211 TDPLLERYKVIILDEAHERTLATDVLFGLL 300
>BP036259
Length = 532
Score = 53.9 bits (128), Expect = 1e-07
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 3/80 (3%)
Frame = -2
Query: 759 CGACYSETCTRCHIEYHPYVSCERYRQFKDDP---DSSLRDWCKGKEQVKNCPACGHVIE 815
C C C C + +H ++C Y++ +P D L+ + + C C H+IE
Sbjct: 468 CIKCRGFFCFICKVPWHNGMTCHAYKKLNPNPPAEDLKLKSLAT-RSLWRQCVKCNHMIE 292
Query: 816 KVDGCNHIECKCGKHICWVC 835
+GC H+ C+CG C+ C
Sbjct: 291 LAEGCYHMTCRCGYEFCYQC 232
>TC18486 similar to UP|Q9LZQ9 (Q9LZQ9) ATP-dependent RNA helicase-like
protein, partial (22%)
Length = 549
Score = 53.9 bits (128), Expect = 1e-07
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Frame = +1
Query: 4 QITVLIGETGSGKSTQLVQFLADS------GVGANESIVCTQPRRIAAKSLAERVREESG 57
Q +L+GETGSGK+TQ+ QF+ ++ + CTQPRR+AA S++ RV EE
Sbjct: 229 QTLILVGETGSGKTTQIPQFVLEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMD 408
Query: 58 GCYEDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSD 96
+ + F + + + ++TD LL+ M+D
Sbjct: 409 VTIGE-EVGYSIRFEDCSSSKTVLKYLTDGMLLREAMAD 522
>AW428847
Length = 473
Score = 43.5 bits (101), Expect = 1e-04
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = +2
Query: 784 RQFKDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIEC--KCGKHICWVCLEFFTT 841
R K+ +S +W K CP C IEK GC H+ C C CW+CL ++
Sbjct: 11 RVMKNSAESENMNWILANS--KPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSD 184
Query: 842 SGE 844
GE
Sbjct: 185 HGE 193
>TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro protein (Sjogren
syndrome type A antigen) (SS-A) (Ro(SS-A)) (52 kDa
ribonucleoprotein autoantigen Ro/SS-A), partial (5%)
Length = 545
Score = 34.3 bits (77), Expect = 0.086
Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Frame = +3
Query: 639 SERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSC--------MVEQCESAIKNQ 684
S + D +CPICL V D L CGH+FC C +V+ +SA+ Q
Sbjct: 33 SIKIDIDLTCPICLDTVFDPVSLT-CGHIFCYMCACSAASVSIVDGLKSAVTKQ 191
>TC9250 UP|Q9FLP6 (Q9FLP6) Ubiquitin-like protein SMT3-like
(AT5g55160/MCO15_11) (Small ubiquitin-like modifier 2),
partial (22%)
Length = 1363
Score = 34.3 bits (77), Expect = 0.086
Identities = 32/138 (23%), Positives = 54/138 (38%), Gaps = 17/138 (12%)
Frame = +1
Query: 594 LKEKVPGADLRLNTRNRTILC-HGNSELKSRV---EEITFEIARLSNPSS-ERFDTGPSC 648
L P A +++ + + +C GN +LK + T + + NP + + PSC
Sbjct: 784 LPSATPEAAAKVDAPSTSTICPEGNEKLKLKTLFPVIFTEDTSEPKNPKALDNSYICPSC 963
Query: 649 PICLCEVEDGYQLEGCGHLFCQSC---------MVEQCESAIKNQGSFPIR---CAHQGC 696
+ L + CGH+FC+ C + C A K + + G
Sbjct: 964 KVTLTNTMSLVAISSCGHVFCKKCADRFMASDKVCLVCNKACKERHLVNLEKGGTGFAGH 1143
Query: 697 GNHILLVDFRTLLSNDKL 714
G+H+ DF+ L S L
Sbjct: 1144GDHLEARDFKHLGSGSGL 1197
>TC14940
Length = 781
Score = 32.0 bits (71), Expect = 0.43
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +2
Query: 647 SCPICLCEVEDGYQLEGCGHLFCQSCMVEQCESAIKNQGSFP 688
SCPIC+ + + CGH+FC++C+ ++AI Q P
Sbjct: 146 SCPICMGPLVEEMSTR-CGHIFCKACI----KAAISAQNKCP 256
>TC11949
Length = 780
Score = 32.0 bits (71), Expect = 0.43
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 639 SERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSC 672
S + D +C IC+ V D L CGH+FC SC
Sbjct: 102 SIKIDIDLTCSICMDTVFDPVSLT-CGHIFCYSC 200
>AI967596
Length = 358
Score = 31.6 bits (70), Expect = 0.56
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 646 PSCPICLCEVEDGYQLEGCGHLFCQSC 672
P CPICL +D GCGH C+ C
Sbjct: 114 PVCPICLTNPKD--MAFGCGHTTCKEC 188
>TC12598 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, partial (8%)
Length = 349
Score = 30.8 bits (68), Expect = 0.95
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = -2
Query: 713 KLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTA 753
K+ ++ SLG V+ S GTY P P + + DPD A
Sbjct: 261 KIGTWYKISLGKLVSKS*GTYDLVPETFTPILSKTYDPDLA 139
>TC18894
Length = 507
Score = 30.8 bits (68), Expect = 0.95
Identities = 12/32 (37%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = +1
Query: 807 CPACGHVIEKVDGCNHIEC-KCGKHICWVCLE 837
CP+C K+ NH+ C C H C++C E
Sbjct: 10 CPSCRQFNAKIGNNNHMFCWACQSHYCYLCNE 105
>TC12743 weakly similar to UP|Q9LM77 (Q9LM77) F2D10.26, partial (24%)
Length = 461
Score = 30.0 bits (66), Expect = 1.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 517 TSSIQKATSTYIQFDRRNMKLRIFGSPDKIALAEKKLIQSLLSLHDEKQSVICLSGRDLP 576
T QK S ++ + N +L++ + DK+AL + + LSL D S + DL
Sbjct: 131 TEEPQKLESEAVEGEEENQQLQLLVAEDKLALQFMDSVHNYLSLFDALSSTLGQGWLDLA 310
Query: 577 S 577
S
Sbjct: 311 S 313
>BP055954
Length = 518
Score = 30.0 bits (66), Expect = 1.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 633 RLSNPSSERFDTGPSCPICLCEVEDGYQLE---GCGHLFCQSCMVEQCESAIKNQGSFPI 689
R ++ER +C ICLCE ++ L C H F C+ +S +K GS P+
Sbjct: 256 RFQYAAAERGHGETTCSICLCEFKEAEMLRMMPECRHHFHLCCL----DSWLKLNGSCPV 423
>TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
partial (27%)
Length = 423
Score = 29.3 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +2
Query: 644 TGPSCPICLCEVEDGYQLEGCGHLFCQSCM 673
+G C ICL V+D + CGHL+C C+
Sbjct: 74 SGFDCSICLDRVQDPV-VTLCGHLYCWPCI 160
>TC11793 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
partial (23%)
Length = 527
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 631 IARLSNPSSERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSCMVEQCES 679
IA SS FD C ICL V+D + CGHL+C C+ + S
Sbjct: 312 IAESDRTSSGGFD----CNICLDCVQDPV-VTLCGHLYCWPCIYKWLNS 443
>AV419203
Length = 393
Score = 28.5 bits (62), Expect = 4.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 648 CPICLCEVEDGYQLEG--CGHLFCQSCMVEQCESAIK 682
CP+CL E +G ++ G C H F C+ E +K
Sbjct: 256 CPVCLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVK 366
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,229,699
Number of Sequences: 28460
Number of extensions: 259211
Number of successful extensions: 1314
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of query: 857
length of database: 4,897,600
effective HSP length: 98
effective length of query: 759
effective length of database: 2,108,520
effective search space: 1600366680
effective search space used: 1600366680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141414.11