Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141414.11 - phase: 0 
         (857 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP056980                                                              126  1e-29
BP043658                                                               75  3e-14
AV407363                                                               70  1e-12
TC13431                                                                57  9e-09
AV424955                                                               56  2e-08
BP036259                                                               54  1e-07
TC18486 similar to UP|Q9LZQ9 (Q9LZQ9) ATP-dependent RNA helicase...    54  1e-07
AW428847                                                               44  1e-04
TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro prote...    34  0.086
TC9250 UP|Q9FLP6 (Q9FLP6) Ubiquitin-like protein SMT3-like (AT5g...    34  0.086
TC14940                                                                32  0.43
TC11949                                                                32  0.43
AI967596                                                               32  0.56
TC12598 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, part...    31  0.95
TC18894                                                                31  0.95
TC12743 weakly similar to UP|Q9LM77 (Q9LM77) F2D10.26, partial (...    30  1.6
BP055954                                                               30  1.6
TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing...    29  2.8
TC11793 similar to UP|AAR99376 (AAR99376) Ring domain containing...    29  3.6
AV419203                                                               28  4.7

>BP056980 
          Length = 451

 Score =  126 bits (317), Expect = 1e-29
 Identities = 48/70 (68%), Positives = 62/70 (88%)
 Frame = -1

Query: 787 KDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIECKCGKHICWVCLEFFTTSGECY 846
           K+DPD SL++WC+GKE VK+C ACG+VIEKVDGC+H+EC+CGKH+CWVCLE F +S ECY
Sbjct: 451 KEDPDLSLKEWCQGKEPVKSCSACGYVIEKVDGCHHVECQCGKHVCWVCLEIFLSSDECY 272

Query: 847 SHMDTIHLGV 856
           +H+ TIHL +
Sbjct: 271 NHLRTIHLAI 242


>BP043658 
          Length = 438

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
 Frame = +1

Query: 4   QITVLIGETGSGKSTQLVQFLADSGVGANESIV-CTQPRRIAAKSLAERVREESGGCYED 62
           Q+ V++GETGSGKSTQL Q+L + G      IV CTQPRR+AA S+A+RV EE      D
Sbjct: 115 QVVVVVGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGD 294

Query: 63  SSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSDKNFTGISCIIVDEAH 111
             +     F      ++ I +MTD  LL+  + D +      I++DEAH
Sbjct: 295 -QVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH 438


>AV407363 
          Length = 425

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 39/99 (39%), Positives = 59/99 (59%)
 Frame = +3

Query: 26  DSGVGANESIVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRIIFMT 85
           +SG GA  SI+CTQPRRI+A +++ERV  E G    +S +            ++ ++F T
Sbjct: 9   ESGRGAFCSIICTQPRRISAMAVSERVSAERGEPLGES-VGFKVRLEGMKGKNTHLLFCT 185

Query: 86  DHCLLQHYMSDKNFTGISCIIVDEAHERSINTDLLLALV 124
              LL+  +SD+N  GI+ + VDE HER +N D LL ++
Sbjct: 186 SGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVL 302


>TC13431 
          Length = 552

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 24/98 (24%), Positives = 49/98 (49%), Gaps = 5/98 (5%)
 Frame = +3

Query: 759 CGACYSETCTRCHIEYHPYVSCERYRQF-----KDDPDSSLRDWCKGKEQVKNCPACGHV 813
           C +C+   C +C + +H  ++CE +++      ++D +       K K+  + CP C   
Sbjct: 15  CPSCHRLFCAQCMVPWHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKRKKW-QRCPKCSFY 191

Query: 814 IEKVDGCNHIECKCGKHICWVCLEFFTTSGECYSHMDT 851
           +++  GC H++C+CG + C+ C + +     C  H  T
Sbjct: 192 VQRRSGCEHMKCRCGCNFCYECGKDWKHGHICDKHNST 305


>AV424955 
          Length = 320

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 32/90 (35%), Positives = 50/90 (55%)
 Frame = +1

Query: 35  IVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYM 94
           + CTQPRR+AA S++ RV EE      +  +     F   +   + + ++TD  LL+  M
Sbjct: 34  VACTQPRRVAAMSVSRRVAEEMDVTIGEE-VGYSIRFEDCSSAKTVLKYLTDGMLLREAM 210

Query: 95  SDKNFTGISCIIVDEAHERSINTDLLLALV 124
           +D        II+DEAHER++ TD+L  L+
Sbjct: 211 TDPLLERYKVIILDEAHERTLATDVLFGLL 300


>BP036259 
          Length = 532

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 3/80 (3%)
 Frame = -2

Query: 759 CGACYSETCTRCHIEYHPYVSCERYRQFKDDP---DSSLRDWCKGKEQVKNCPACGHVIE 815
           C  C    C  C + +H  ++C  Y++   +P   D  L+     +   + C  C H+IE
Sbjct: 468 CIKCRGFFCFICKVPWHNGMTCHAYKKLNPNPPAEDLKLKSLAT-RSLWRQCVKCNHMIE 292

Query: 816 KVDGCNHIECKCGKHICWVC 835
             +GC H+ C+CG   C+ C
Sbjct: 291 LAEGCYHMTCRCGYEFCYQC 232


>TC18486 similar to UP|Q9LZQ9 (Q9LZQ9) ATP-dependent RNA helicase-like
           protein, partial (22%)
          Length = 549

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
 Frame = +1

Query: 4   QITVLIGETGSGKSTQLVQFLADS------GVGANESIVCTQPRRIAAKSLAERVREESG 57
           Q  +L+GETGSGK+TQ+ QF+ ++             + CTQPRR+AA S++ RV EE  
Sbjct: 229 QTLILVGETGSGKTTQIPQFVLEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMD 408

Query: 58  GCYEDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSD 96
               +  +     F   +   + + ++TD  LL+  M+D
Sbjct: 409 VTIGE-EVGYSIRFEDCSSSKTVLKYLTDGMLLREAMAD 522


>AW428847 
          Length = 473

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
 Frame = +2

Query: 784 RQFKDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIEC--KCGKHICWVCLEFFTT 841
           R  K+  +S   +W       K CP C   IEK  GC H+ C   C    CW+CL  ++ 
Sbjct: 11  RVMKNSAESENMNWILANS--KPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSD 184

Query: 842 SGE 844
            GE
Sbjct: 185 HGE 193


>TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro protein (Sjogren
           syndrome type A antigen) (SS-A) (Ro(SS-A)) (52 kDa
           ribonucleoprotein autoantigen Ro/SS-A), partial (5%)
          Length = 545

 Score = 34.3 bits (77), Expect = 0.086
 Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
 Frame = +3

Query: 639 SERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSC--------MVEQCESAIKNQ 684
           S + D   +CPICL  V D   L  CGH+FC  C        +V+  +SA+  Q
Sbjct: 33  SIKIDIDLTCPICLDTVFDPVSLT-CGHIFCYMCACSAASVSIVDGLKSAVTKQ 191


>TC9250 UP|Q9FLP6 (Q9FLP6) Ubiquitin-like protein SMT3-like
           (AT5g55160/MCO15_11) (Small ubiquitin-like modifier 2),
           partial (22%)
          Length = 1363

 Score = 34.3 bits (77), Expect = 0.086
 Identities = 32/138 (23%), Positives = 54/138 (38%), Gaps = 17/138 (12%)
 Frame = +1

Query: 594 LKEKVPGADLRLNTRNRTILC-HGNSELKSRV---EEITFEIARLSNPSS-ERFDTGPSC 648
           L    P A  +++  + + +C  GN +LK +       T + +   NP + +     PSC
Sbjct: 784 LPSATPEAAAKVDAPSTSTICPEGNEKLKLKTLFPVIFTEDTSEPKNPKALDNSYICPSC 963

Query: 649 PICLCEVEDGYQLEGCGHLFCQSC---------MVEQCESAIKNQGSFPIR---CAHQGC 696
            + L        +  CGH+FC+ C         +   C  A K +    +        G 
Sbjct: 964 KVTLTNTMSLVAISSCGHVFCKKCADRFMASDKVCLVCNKACKERHLVNLEKGGTGFAGH 1143

Query: 697 GNHILLVDFRTLLSNDKL 714
           G+H+   DF+ L S   L
Sbjct: 1144GDHLEARDFKHLGSGSGL 1197


>TC14940 
          Length = 781

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 15/42 (35%), Positives = 24/42 (56%)
 Frame = +2

Query: 647 SCPICLCEVEDGYQLEGCGHLFCQSCMVEQCESAIKNQGSFP 688
           SCPIC+  + +      CGH+FC++C+    ++AI  Q   P
Sbjct: 146 SCPICMGPLVEEMSTR-CGHIFCKACI----KAAISAQNKCP 256


>TC11949 
          Length = 780

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 639 SERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSC 672
           S + D   +C IC+  V D   L  CGH+FC SC
Sbjct: 102 SIKIDIDLTCSICMDTVFDPVSLT-CGHIFCYSC 200


>AI967596 
          Length = 358

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 646 PSCPICLCEVEDGYQLEGCGHLFCQSC 672
           P CPICL   +D     GCGH  C+ C
Sbjct: 114 PVCPICLTNPKD--MAFGCGHTTCKEC 188


>TC12598 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, partial (8%)
          Length = 349

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 15/41 (36%), Positives = 21/41 (50%)
 Frame = -2

Query: 713 KLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTA 753
           K+   ++ SLG  V+ S GTY   P    P + +  DPD A
Sbjct: 261 KIGTWYKISLGKLVSKS*GTYDLVPETFTPILSKTYDPDLA 139


>TC18894 
          Length = 507

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 12/32 (37%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
 Frame = +1

Query: 807 CPACGHVIEKVDGCNHIEC-KCGKHICWVCLE 837
           CP+C     K+   NH+ C  C  H C++C E
Sbjct: 10  CPSCRQFNAKIGNNNHMFCWACQSHYCYLCNE 105


>TC12743 weakly similar to UP|Q9LM77 (Q9LM77) F2D10.26, partial (24%)
          Length = 461

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 517 TSSIQKATSTYIQFDRRNMKLRIFGSPDKIALAEKKLIQSLLSLHDEKQSVICLSGRDLP 576
           T   QK  S  ++ +  N +L++  + DK+AL     + + LSL D   S +     DL 
Sbjct: 131 TEEPQKLESEAVEGEEENQQLQLLVAEDKLALQFMDSVHNYLSLFDALSSTLGQGWLDLA 310

Query: 577 S 577
           S
Sbjct: 311 S 313


>BP055954 
          Length = 518

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 633 RLSNPSSERFDTGPSCPICLCEVEDGYQLE---GCGHLFCQSCMVEQCESAIKNQGSFPI 689
           R    ++ER     +C ICLCE ++   L     C H F   C+    +S +K  GS P+
Sbjct: 256 RFQYAAAERGHGETTCSICLCEFKEAEMLRMMPECRHHFHLCCL----DSWLKLNGSCPV 423


>TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
           partial (27%)
          Length = 423

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = +2

Query: 644 TGPSCPICLCEVEDGYQLEGCGHLFCQSCM 673
           +G  C ICL  V+D   +  CGHL+C  C+
Sbjct: 74  SGFDCSICLDRVQDPV-VTLCGHLYCWPCI 160


>TC11793 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
           partial (23%)
          Length = 527

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 631 IARLSNPSSERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSCMVEQCES 679
           IA     SS  FD    C ICL  V+D   +  CGHL+C  C+ +   S
Sbjct: 312 IAESDRTSSGGFD----CNICLDCVQDPV-VTLCGHLYCWPCIYKWLNS 443


>AV419203 
          Length = 393

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 648 CPICLCEVEDGYQLEG--CGHLFCQSCMVEQCESAIK 682
           CP+CL E  +G ++ G  C H F   C+ E     +K
Sbjct: 256 CPVCLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVK 366


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,229,699
Number of Sequences: 28460
Number of extensions: 259211
Number of successful extensions: 1314
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of query: 857
length of database: 4,897,600
effective HSP length: 98
effective length of query: 759
effective length of database: 2,108,520
effective search space: 1600366680
effective search space used: 1600366680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)


Medicago: description of AC141414.11