BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141414.1 - phase: 0
(104 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10488 28 0.24
TC13917 27 0.41
TC19619 similar to UP|CHIA_CICAR (P36908) Acidic endochitinase p... 27 0.54
TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri... 27 0.70
TC9684 26 0.92
TC8784 similar to UP|Q9M4Q9 (Q9M4Q9) NADP-dependent malic protei... 26 1.2
TC16668 similar to UP|CHLD_PEA (O22437) Magnesium-chelatase subu... 25 2.0
TC14944 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA),... 25 2.0
BI417325 25 2.0
TC11878 similar to UP|O49605 (O49605) (Cyclophilin-like protein... 25 2.7
AW719960 25 2.7
TC15936 similar to UP|BAD05166 (BAD05166) Acid phosphatase, part... 25 2.7
BP085985 24 3.5
TC10221 24 3.5
TC12018 weakly similar to GB|AAP37831.1|30725618|BT008472 At4g31... 24 4.6
TC17901 weakly similar to UP|Q94EI5 (Q94EI5) AT5g62130/mtg10_150... 24 4.6
TC7943 weakly similar to UP|Q8LPE6 (Q8LPE6) Epoxide hydrolase (... 24 4.6
TC18358 23 6.0
TC15701 similar to UP|Q9FMM3 (Q9FMM3) Gb|AAC80623.1, partial (10%) 23 6.0
AI967518 23 7.8
>TC10488
Length = 422
Score = 28.1 bits (61), Expect = 0.24
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 1/62 (1%)
Frame = +2
Query: 4 YDMTGFFSKEFIGCSNFQFVAVMSSEKEELSSTVKRKLSCFEHFDAL-WFCYSPVYQMKQ 62
Y + FFS CS+F F+ ++S+ L V L CFE F L C+ Y +
Sbjct: 227 YAVVSFFSSLLFKCSSFFFLVLISA--VVLFIAVALLLCCFEPFILLRRVCFPEAYSLSM 400
Query: 63 YY 64
+
Sbjct: 401 NF 406
>TC13917
Length = 547
Score = 27.3 bits (59), Expect = 0.41
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 43 CFEHFDALWFCYSPVYQMKQYYRLGTL 69
C E F C+S + Q KQ+YRL L
Sbjct: 319 CLEKFKGSHQCHSNLLQTKQHYRLAKL 239
>TC19619 similar to UP|CHIA_CICAR (P36908) Acidic endochitinase precursor ,
partial (41%)
Length = 541
Score = 26.9 bits (58), Expect = 0.54
Identities = 19/56 (33%), Positives = 24/56 (41%), Gaps = 2/56 (3%)
Frame = +1
Query: 33 LSSTVKRKLSCFEHFDALW--FCYSPVYQMKQYYRLGTLDNCRGKWKAWTDCLMLK 86
L S +K L FD +W F +P Q Y G +N WK WTD +K
Sbjct: 67 LDSAIKTGL-----FDHVWVQFYNNPQCQ----YSRGNTNNLLNSWKQWTDVSEIK 207
>TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
factor 17 (WRKY DNA-binding protein 17), partial (53%)
Length = 1284
Score = 26.6 bits (57), Expect = 0.70
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 8 GFFSKEFIGCSNFQFVAVMSSEKEELSSTVKRKLSCFEH 46
G S +G S F AV + K LSST K C EH
Sbjct: 507 GSVSNGKLGSSIFLTPAVSAGGKPPLSSTTPSKKRCHEH 623
>TC9684
Length = 588
Score = 26.2 bits (56), Expect = 0.92
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 16 GCSNFQFVAVMSSEKEELSSTVKRKLSCFEHFDALWFCYSPVYQMKQYY 64
GC+ + + S ++ LS + S FE LW +SP Q++ Y
Sbjct: 160 GCTEIMGLLLTSL*EDPLSLLIFFLFSPFERIWLLWMIFSPSLQVQVIY 306
>TC8784 similar to UP|Q9M4Q9 (Q9M4Q9) NADP-dependent malic protein (Malic
enzyme) , partial (18%)
Length = 729
Score = 25.8 bits (55), Expect = 1.2
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -3
Query: 38 KRKLSCFEHFDALWFCYSPVYQMKQ--YYRLGTLDNCRGKWKA 78
KRK C F A W SPV + + L L G WKA
Sbjct: 397 KRKWGCCHFFFAFWIVTSPVGSVGWGIHAALSKLHQIFGLWKA 269
>TC16668 similar to UP|CHLD_PEA (O22437) Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg-protoporphyrin IX chelatase)
(Mg-chelatase subunit D) , partial (16%)
Length = 615
Score = 25.0 bits (53), Expect = 2.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 72 CRGKWKAWTD 81
CR KW+ WTD
Sbjct: 43 CRDKWRCWTD 72
>TC14944 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA), partial
(85%)
Length = 1155
Score = 25.0 bits (53), Expect = 2.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 72 CRGKWKAWTDCLMLKTKPKSQVEVGSY 98
C +W++W+ LM KT V G Y
Sbjct: 827 CSPQWRSWSQRLM*KTMNGCHVSHGGY 747
>BI417325
Length = 449
Score = 25.0 bits (53), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -3
Query: 15 IGCSNFQFVAVMSSEKEELSSTVKRKLSCF 44
+GCS+F V SSE + +ST R +S F
Sbjct: 279 VGCSSFFSVTWCSSESLKTASTSSRLVSPF 190
>TC11878 similar to UP|O49605 (O49605) (Cyclophilin-like protein)
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) , partial (47%)
Length = 504
Score = 24.6 bits (52), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +1
Query: 76 WKAWTDCLMLKTKPKSQVE 94
+KAW CL LK +P+ VE
Sbjct: 199 FKAWILCLQLKGEPEPTVE 255
>AW719960
Length = 449
Score = 24.6 bits (52), Expect = 2.7
Identities = 11/37 (29%), Positives = 18/37 (47%)
Frame = +2
Query: 40 KLSCFEHFDALWFCYSPVYQMKQYYRLGTLDNCRGKW 76
+LS A W+ PV++ + +RL +CR W
Sbjct: 128 RLSSTWTIPAAWWLSWPVWRTRSSWRLSWCPSCRLSW 238
>TC15936 similar to UP|BAD05166 (BAD05166) Acid phosphatase, partial (88%)
Length = 1324
Score = 24.6 bits (52), Expect = 2.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 58 YQMKQYYRLGTLDNCRGKW 76
Y+ K YYR+G+ D+ R W
Sbjct: 491 YKTKYYYRIGSGDSSREFW 547
>BP085985
Length = 152
Score = 24.3 bits (51), Expect = 3.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 41 LSCFEHFDALWF 52
L CF+H++ LWF
Sbjct: 120 LVCFQHYNLLWF 85
>TC10221
Length = 1398
Score = 24.3 bits (51), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 12 KEFIGCSNFQFVAVMSSEKEELS 34
KEF+ C+ ++A+ +S EELS
Sbjct: 376 KEFLQCAMAPWIALCNSSMEELS 308
>TC12018 weakly similar to GB|AAP37831.1|30725618|BT008472 At4g31350
{Arabidopsis thaliana;}, partial (7%)
Length = 553
Score = 23.9 bits (50), Expect = 4.6
Identities = 17/59 (28%), Positives = 27/59 (44%)
Frame = -3
Query: 19 NFQFVAVMSSEKEELSSTVKRKLSCFEHFDALWFCYSPVYQMKQYYRLGTLDNCRGKWK 77
NFQF S+K +L+STVK K +L+ Y ++ + N + KW+
Sbjct: 485 NFQFYY---SDK*QLASTVKIKTKPHPSLSSLYQGYQNFPSFRRICDDSNIINKKSKWE 318
>TC17901 weakly similar to UP|Q94EI5 (Q94EI5) AT5g62130/mtg10_150, partial
(52%)
Length = 763
Score = 23.9 bits (50), Expect = 4.6
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = +2
Query: 45 EHFDALWFCYSPVYQMKQYYRLGTLDNCR 73
EHFD W+ P+Y Q+ + ++CR
Sbjct: 344 EHFDRPWYMQEPLY--LQWKKWDCQNDCR 424
>TC7943 weakly similar to UP|Q8LPE6 (Q8LPE6) Epoxide hydrolase (Fragment)
, partial (18%)
Length = 456
Score = 23.9 bits (50), Expect = 4.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = +1
Query: 41 LSCFEHFDALWFCYSPVYQMKQYYRL--------GTLDNCRGKWKAWTDCLMLKTKPKSQ 92
L CFE L+F Y+ V Q YR+ GT+ C L+L T P S+
Sbjct: 247 LLCFELPFPLFFLYNKVPTRSQIYRVQLMNSIFRGTVRVCEVMIPPCMRSLLLATPPPSR 426
>TC18358
Length = 509
Score = 23.5 bits (49), Expect = 6.0
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +2
Query: 8 GFFSKEFIGCSNFQFVAV-----MSSEKEELSSTVKRKLSCFEHFDALWFCYSPV 57
G+ + ++ CS F + +SE + S +S F +F W C SPV
Sbjct: 284 GWIEQWYLMCSRCLFFCL*FSWNQASELVIIYSVFSPSVSLFFNFLLFWRCSSPV 448
>TC15701 similar to UP|Q9FMM3 (Q9FMM3) Gb|AAC80623.1, partial (10%)
Length = 1030
Score = 23.5 bits (49), Expect = 6.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 17 CSNFQFVAVMSSEKEELSSTVKRKLSCFEHF 47
C + + +S +K +LS+ +K KLS +H+
Sbjct: 119 CVLIEKLGSLSGQKVQLSTEMKLKLSMKDHY 27
>AI967518
Length = 451
Score = 23.1 bits (48), Expect = 7.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 53 CYSPVYQMKQYYRLGTLDNCRG 74
C P+YQ + +G D+C G
Sbjct: 284 CCFPLYQXQHSLNIGYCDHCAG 219
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,348,151
Number of Sequences: 28460
Number of extensions: 34883
Number of successful extensions: 280
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of query: 104
length of database: 4,897,600
effective HSP length: 80
effective length of query: 24
effective length of database: 2,620,800
effective search space: 62899200
effective search space used: 62899200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)
Medicago: description of AC141414.1