TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141323.9 - phase: 0 
         (523 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19686 weakly similar to UP|Q9FIN8 (Q9FIN8) Genomic DNA, chromo...   150  3e-67
AW719410                                                               47  8e-06
TC11087 weakly similar to UP|Q8GS92 (Q8GS92) OJ1513_F02.5 protei...    37  0.008
TC16552 similar to UP|Q94IE2 (Q94IE2) APG1, partial (31%)              31  0.43
AV780895                                                               31  0.57
BI420393                                                               28  2.8
AU088851                                                               28  3.7
TC18875 similar to UP|CTNS_ARATH (P57758) Cystinosin homolog, pa...    28  4.8
TC19820 similar to GB|AAO63279.1|28950711|BT005215 At3g56740 {Ar...    27  8.2
TC14194 weakly similar to UP|Q8GT67 (Q8GT67) Xyloglucan-specific...    27  8.2
BP060196                                                               27  8.2
AV413925                                                               27  8.2

>TC19686 weakly similar to UP|Q9FIN8 (Q9FIN8) Genomic DNA, chromosome 5,
          TAC clone:K16H17 (At5g24340), partial (20%)
          Length = 487

 Score =  150 bits (379), Expect(2) = 3e-67
 Identities = 73/90 (81%), Positives = 81/90 (89%), Gaps = 1/90 (1%)
 Frame = +3

Query: 3  PPNQKPLEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQ 62
          P NQKP E+H VT+TDSPEFT L+R+LTQTS++GLDAEWKPVRTHQ SFP VSLLQIACQ
Sbjct: 3  PHNQKPFEVHLVTSTDSPEFTLLSRTLTQTSIIGLDAEWKPVRTHQTSFPAVSLLQIACQ 182

Query: 63 L-GDDEVVFLLDLISLPLSSIWEPLREMLV 91
          L G D VVFLLDL+SLPLSS+WEPLREMLV
Sbjct: 183LRGGDSVVFLLDLLSLPLSSLWEPLREMLV 272



 Score =  122 bits (306), Expect(2) = 3e-67
 Identities = 60/71 (84%), Positives = 61/71 (85%)
 Frame = +1

Query: 92  SADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLDITSVYNHLQFKKNGRIASKQN 151
           S DILKLGFRFKQDLVYLSSTFC  GC PG DKVEPYLDITSVYN LQ KK GRIASKQ 
Sbjct: 274 SPDILKLGFRFKQDLVYLSSTFCAHGCEPGIDKVEPYLDITSVYNQLQPKKQGRIASKQT 453

Query: 152 KSLSTICGELL 162
           KS STICGE+L
Sbjct: 454 KSSSTICGEVL 486


>AW719410 
          Length = 538

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 22/47 (46%), Positives = 33/47 (69%)
 Frame = +3

Query: 154 LSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIFK 200
           L+ +  ++LG  L+K  + S+W QRPLTE Q+ YAA+DA  L+ IF+
Sbjct: 39  LAGLTEKILGARLNKTRRNSNWEQRPLTENQLEYAALDAVVLIHIFR 179


>TC11087 weakly similar to UP|Q8GS92 (Q8GS92) OJ1513_F02.5 protein
           (OJ1118_G09.13 protein), partial (6%)
          Length = 689

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 11/192 (5%)
 Frame = +3

Query: 12  HFVTTTDSPEFTHLTRSLTQTS---------LVGLDAEWKPVRTHQNSFPTVSLLQIACQ 62
           H + T  + + +H+   L++T+         +VGLD EW+P      + P V+LLQ+   
Sbjct: 81  HTIQTLFTSDPSHVDSWLSETTRHRNNKLPFIVGLDIEWRPNTQAFKNNP-VALLQLCV- 254

Query: 63  LGDDEVVFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGF 122
              D    +  +I  P  SI + L   L +     +G   + D+  L         N   
Sbjct: 255 ---DHRCLVFQIIHAP--SIPDSLSSFLSNPQHTFVGVGIQGDVDKLLKDRSFTVANA-- 413

Query: 123 DKVEPYLDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGITLSK--ELQCSDWSQRPL 180
             V+       VY   +  K G         L  +   +LG+ + K  ++  S W  R L
Sbjct: 414 --VDLRTLAAEVYGDPEMMKAG---------LKALTQRVLGMNVEKPKKISTSKWDDRYL 560

Query: 181 TEEQMTYAAMDA 192
           + EQ+ YAA+DA
Sbjct: 561 SVEQVQYAAIDA 596


>TC16552 similar to UP|Q94IE2 (Q94IE2) APG1, partial (31%)
          Length = 433

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 19/66 (28%), Positives = 28/66 (41%), Gaps = 15/66 (22%)
 Frame = +1

Query: 461 IEAAKGFQKIPNCLFNKNLEFWQCMDCHQLYWEVLFTCS---------------VCCELL 505
           + + K  + + N LF+    FW+    H LYW  LFTC                V CE  
Sbjct: 172 VRSKKMLKSL*NLLFSSCAFFWESWLLHGLYW-FLFTCGSKIRLFRNLSQSKMFVVCETF 348

Query: 506 FTIALS 511
           +T++ S
Sbjct: 349 YTVSCS 366


>AV780895 
          Length = 445

 Score = 30.8 bits (68), Expect = 0.57
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 475 FNKNLEFWQCMDCHQLYWEVLFTCS 499
           FN    FW CM+  QL+W+++  C+
Sbjct: 145 FNSVGLFWSCMNIFQLFWKIVVLCT 71


>BI420393 
          Length = 515

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 7/52 (13%)
 Frame = -3

Query: 447 NGRFIQKPLSTEEAIEAAK---GFQKIPNCLFNKNLEFWQ----CMDCHQLY 491
           NGR +Q PL T    EAA+       I       N +FW+    C  CH L+
Sbjct: 414 NGRIMQHPLPTPPKGEAARNSYSTNSIKPVSILHNSKFWKPFIICFSCHLLF 259


>AU088851 
          Length = 663

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (51%)
 Frame = +3

Query: 52  PTVSLLQIACQLGDDEVVFLLDLISLPLSSIWEPLREMLVSADILKLG 99
           P    L  A ++  D+ +FL    SLP  ++W  ++E+L S D  K G
Sbjct: 387 PPSPRLSFASRMWADKTLFL----SLPSYNLWLLIKELLASLDFXKQG 518


>TC18875 similar to UP|CTNS_ARATH (P57758) Cystinosin homolog, partial (58%)
          Length = 567

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 1/52 (1%)
 Frame = +3

Query: 463 AAKGFQKIPNCLFNKNLEFWQCMDCHQLYWEVLFTCSVCCEL-LFTIALSFI 513
           +A G   IP+C    NL  W+       YW  L   + CC L L+    SF+
Sbjct: 354 SADGDYIIPDC----NL*TWKSESVQNFYWNCLCCLADCCNLFLYCFV*SFL 497


>TC19820 similar to GB|AAO63279.1|28950711|BT005215 At3g56740 {Arabidopsis
           thaliana;}, partial (23%)
          Length = 571

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 443 CTK-CNGRFIQKPLSTEEAIEAAKG 466
           CTK C   F+ KP+ T  AIE++ G
Sbjct: 215 CTKACLAEFLSKPIETRVAIESSDG 141


>TC14194 weakly similar to UP|Q8GT67 (Q8GT67) Xyloglucan-specific fungal
           endoglucanase inhibitor protein precursor, partial (11%)
          Length = 892

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (50%)
 Frame = +2

Query: 475 FNKNLEFWQCMDCHQLYWEVLFTCSVCCELLFTIALSFILNKC 517
           F K+   W+  D H  +WE  FTC  C   + +  L  IL++C
Sbjct: 632 FFKHQRHWE--DLH--WWETKFTCQCCQNWICSDIL*RILHQC 748


>BP060196 
          Length = 317

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 75  ISLPLSSIWEPLREMLVSADILKLGFRFKQDLV 107
           I + +SS WEPL+   VS+D L L   F +D++
Sbjct: 53  IYIKVSSTWEPLKVSRVSSDSLSL---FWEDII 142


>AV413925 
          Length = 402

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 463 AAKGFQKIPNCLFNKNLEFWQCMDCHQLYWEVLFTCSVCCEL 504
           +A G   IP+C    NL  W+       YW  L   + CC L
Sbjct: 260 SADGDYIIPDC----NL*TWKSESVQNFYWNCLCCLADCCNL 373


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,745,929
Number of Sequences: 28460
Number of extensions: 144661
Number of successful extensions: 768
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of query: 523
length of database: 4,897,600
effective HSP length: 94
effective length of query: 429
effective length of database: 2,222,360
effective search space: 953392440
effective search space used: 953392440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)