TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141323.12 + phase: 0 /pseudo
         (133 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9874 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partia...    59  2e-10
AV775734                                                               39  4e-04
AV775986                                                               28  0.70
BP064430                                                               26  2.0
BF177544                                                               26  2.0
AV422670                                                               25  3.5
AV416758                                                               25  3.5
TC15038 similar to UP|O04287 (O04287) Immunophilin, complete           25  3.5
AI967706                                                               25  5.9
AV424969                                                               25  5.9
TC18086 similar to UP|O81023 (O81023) At2g26840 protein, partial...    24  7.7
BP062633                                                               24  7.7

>TC9874 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partial (22%)
          Length = 546

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +3

Query: 87  SQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNIGGECR 132
           S+ LV+  DKR NI+ FI GI NHT EG KKQN K VR+N+ G+ R
Sbjct: 9   SKKLVICADKRGNISRFINGIHNHTQEGKKKQNCKSVRYNVDGQSR 146


>AV775734 
          Length = 427

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -2

Query: 110 HTPEGNKKQNMKCVRFNIGGECR 132
           HT EG KKQN KCVR+N+ G+ R
Sbjct: 426 HTLEGRKKQNCKCVRYNVNGQSR 358


>AV775986 
          Length = 489

 Score = 27.7 bits (60), Expect = 0.70
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +3

Query: 38  HAEGYTVEADKSIKDLTVIREYVGDIDFLKNREYDDGDRIMTLLSASNPSQSLVVFPDKR 97
           +AE +T E D ++K+L   RE +   +FL+ R  DD ++    +  +NP+  ++  PD  
Sbjct: 261 YAEMHTTE-DLALKELK--REEISR-NFLRRRTLDDTNKPTNTVFPTNPTTPIITPPDNT 428

Query: 98  SNI 100
             I
Sbjct: 429 PTI 437


>BP064430 
          Length = 464

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
 Frame = +2

Query: 7   HVLSKEDFET----LNLSRSMMERGECPLLMVVFDHAEGYTVEADKS 49
           ++L   D+ T    L +S+SM    EC LL+V  D     TVEA  S
Sbjct: 215 YLLMLADYTTREWVLEVSKSMF*DSECLLLLVGVDLVSSTTVEAGLS 355


>BF177544 
          Length = 318

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 72  DDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFI 104
           ++ D+++ L+ + NP    VV  D  +N APF+
Sbjct: 120 NERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFL 218


>AV422670 
          Length = 464

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 62  DIDFLKNREYDDGDRIMTLLSASNPSQSLVVFP 94
           D+  L+NR+  D ++   L    NP   LV++P
Sbjct: 354 DLHNLQNRQNSDNNKQNPLFQLPNPFFQLVIYP 256


>AV416758 
          Length = 297

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = -1

Query: 81  LSASNPSQSLVVFPDKRSNIAPFITGIDN 109
           +S +  +Q+L +FP K +   P +TG DN
Sbjct: 261 ISVTGSTQALGLFP*KCTKTCPSLTGSDN 175


>TC15038 similar to UP|O04287 (O04287) Immunophilin, complete
          Length = 602

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = -1

Query: 81  LSASNPSQSLVVFPDKRSN 99
           L   NP QSLVVFP + S+
Sbjct: 383 LQFQNPGQSLVVFPKQESH 327


>AI967706 
          Length = 357

 Score = 24.6 bits (52), Expect = 5.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 72  DDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFI 104
           ++ D+++ ++ + NP    VV  D  +N +PF+
Sbjct: 104 NERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFL 202


>AV424969 
          Length = 359

 Score = 24.6 bits (52), Expect = 5.9
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 110 HTPEGNKKQNMKCVRFNIGGECR 132
           H P  N +   +C  F++   CR
Sbjct: 358 HVPWANNRSRSRCAEFSVPSSCR 290


>TC18086 similar to UP|O81023 (O81023) At2g26840 protein, partial (47%)
          Length = 954

 Score = 24.3 bits (51), Expect = 7.7
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
 Frame = -1

Query: 65  FLKNREYDDGDRIMTLLSASN-----PSQSLVVFPDK---RSNIAPFITGIDNHTPEGNK 116
           FL NRE  DG+ +   L  S+     P  S   F  K    +   P  T I  H+P  N 
Sbjct: 717 FLSNRELTDGNNVAATLLLSSFEILLPESSNFAFQVKDGTGTTENPEATKIPIHSPYPNP 538

Query: 117 KQNMKC 122
             +  C
Sbjct: 537 PLHQPC 520


>BP062633 
          Length = 571

 Score = 24.3 bits (51), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = -1

Query: 50  IKDLTVIREYVGDIDFL 66
           I D T  R+YVG+IDF+
Sbjct: 430 ISDKTCRRKYVGEIDFV 380


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,055,755
Number of Sequences: 28460
Number of extensions: 21143
Number of successful extensions: 91
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of query: 133
length of database: 4,897,600
effective HSP length: 80
effective length of query: 53
effective length of database: 2,620,800
effective search space: 138902400
effective search space used: 138902400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)