BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.10 + phase: 0 /pseudo
(337 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9874 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partia... 130 3e-31
AV775734 93 7e-20
TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, pa... 63 6e-11
BP031190 41 3e-04
BI420292 37 0.005
BP033618 36 0.010
TC9091 similar to UP|Q9Y7R4 (Q9Y7R4) Set domain protein, transcr... 30 0.44
BP042201 30 0.75
TC9137 UP|CAF02297 (CAF02297) Cysteine-rich polycomb-like protei... 29 0.98
TC15846 similar to UP|Q8UV28 (Q8UV28) P32INGL, partial (16%) 29 0.98
AV415050 29 0.98
TC10796 similar to GB|AAO64916.1|29029074|BT005981 At5g53430 {Ar... 29 1.3
TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prote... 28 1.7
BI420000 28 2.2
TC17146 similar to UP|Q9FIB1 (Q9FIB1) Emb|CAB61744.1, partial (61%) 28 2.2
TC15130 similar to UP|O81488 (O81488) F9D12.13 protein, partial ... 28 2.9
TC11218 similar to UP|Q941H0 (Q941H0) Trithorax 4 (Fragment), pa... 27 3.7
TC15455 27 3.7
AV414247 27 6.4
>TC9874 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partial (22%)
Length = 546
Score = 130 bits (327), Expect = 3e-31
Identities = 60/77 (77%), Positives = 66/77 (84%)
Frame = +3
Query: 261 SQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGER 320
S+ LVIC DKR NI+RFINGI+NHT EGKKKQN K VRYNVDG+ RV L+A RDIAKGER
Sbjct: 9 SKKLVICADKRGNISRFINGIHNHTQEGKKKQNCKSVRYNVDGQSRVFLVATRDIAKGER 188
Query: 321 LYYDYNGLEHEYPTEHF 337
LYYDYNG EH YPTE+F
Sbjct: 189 LYYDYNGYEHRYPTENF 239
>AV775734
Length = 427
Score = 92.8 bits (229), Expect = 7e-20
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = -2
Query: 284 HTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERLYYDYNGLEHEYPTEH 336
HT EG+KKQN KCVRYNV+G+ RV L+A RDIA+GERLYYDYNG EHEYPTE+
Sbjct: 426 HTLEGRKKQNCKCVRYNVNGQSRVFLVAIRDIAEGERLYYDYNGYEHEYPTEN 268
>TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, partial (7%)
Length = 951
Score = 63.2 bits (152), Expect = 6e-11
Identities = 23/49 (46%), Positives = 31/49 (62%)
Frame = +1
Query: 25 DDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
D+ VC+ C K +LLCD CD YH +CL P L +P+ +W+CPSC
Sbjct: 103 DEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSC 249
>BP031190
Length = 488
Score = 40.8 bits (94), Expect = 3e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 46 NCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKFPL 84
+C G H+ C P P V + WFCP CS P P+
Sbjct: 292 SCGIGTHIDCCDPPFPEVTEEDWFCPKCSSTPNCSNNPV 176
>BI420292
Length = 553
Score = 37.0 bits (84), Expect = 0.005
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +2
Query: 38 PTKLLLCDNCDNGYHLFCL----TPILPSVPKSSWFCPS-CSH 75
P +++CD C+ YH+ CL L +P+ WFC S C H
Sbjct: 380 PRTVMICDQCEKEYHVECLKDHNKQNLEKLPEGKWFCCSDCDH 508
Score = 36.6 bits (83), Expect = 0.006
Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 2/77 (2%)
Frame = +2
Query: 1 MVSPLRRRRIPAPKKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDN--CDNGYHLFCLTP 58
MVS L + I KK+S + + D +C C++G L+ CD C +HL C
Sbjct: 59 MVS-LHQLSIDLLKKRSLSTKEHVD--LCSLCSNGGD---LISCDRDKCTRAFHLKCAR- 217
Query: 59 ILPSVPKSSWFCPSCSH 75
LP +P W+C C +
Sbjct: 218 -LPRIPSGLWYCKYCEN 265
>BP033618
Length = 467
Score = 35.8 bits (81), Expect = 0.010
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 2/54 (3%)
Frame = +2
Query: 22 NNDDDVVCQKCNSGKSPTKLLLC--DNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
+ D + +C KC+ G L+ C C YH C+ P VP W+C C
Sbjct: 305 HGDSEPLCCKCSRGGM---LMRCCGKRCQRSYHPSCVDPPFNYVPPXFWYCIQC 457
>TC9091 similar to UP|Q9Y7R4 (Q9Y7R4) Set domain protein, transcriptional
silencing, partial (4%)
Length = 607
Score = 30.4 bits (67), Expect = 0.44
Identities = 22/60 (36%), Positives = 32/60 (52%), Gaps = 4/60 (6%)
Frame = +2
Query: 270 KRSNIARFINGINNHTPEGKKKQ----NLKCVRYNVDGECRVLLIANRDIAKGERLYYDY 325
K N++RFIN ++ +P Q ++ C R ++ L A+RDIA GE L YDY
Sbjct: 14 KYGNVSRFIN--HSCSPHLVSHQVLIESMDCERTHIG------LYASRDIALGEELTYDY 169
>BP042201
Length = 246
Score = 29.6 bits (65), Expect = 0.75
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 61 PSVPKSSWFCPSCS 74
P VP+ WFCP CS
Sbjct: 244 PEVPEEDWFCPKCS 203
>TC9137 UP|CAF02297 (CAF02297) Cysteine-rich polycomb-like protein, complete
Length = 3086
Score = 29.3 bits (64), Expect = 0.98
Identities = 21/65 (32%), Positives = 28/65 (42%)
Frame = +1
Query: 14 KKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
KK S+T + N C++CN KS L CD G +FCL P C C
Sbjct: 1549 KKTSSTADGNG----CKRCNCKKSKCLKLYCDCFAAG--VFCLDPC---------SCQDC 1683
Query: 74 SHNPK 78
+ P+
Sbjct: 1684 FNKPE 1698
>TC15846 similar to UP|Q8UV28 (Q8UV28) P32INGL, partial (16%)
Length = 639
Score = 29.3 bits (64), Expect = 0.98
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 28 VCQKCNSGKSPTKLLLCDN--CDNG--YHLFCLTPILPSVPKSSWFCPSCSHNPK 78
VC + + G ++ CDN C G +H C+ + K W+CP+C P+
Sbjct: 70 VCHQVSFGD----MIACDNENCQGGEWFHYACVGLTQETRFKGKWYCPTCRLLPQ 222
>AV415050
Length = 357
Score = 29.3 bits (64), Expect = 0.98
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = +2
Query: 27 VVCQKCNSGKSPTKLLLCDNCD-NGYHLFCLTPILPSVPKSSWFCPSC 73
+VC KC + CD C H +CL + +W C C
Sbjct: 104 MVCLKCGDEGFSDTFVFCDKCQVYALHRYCLDGPVNFYDDVTWLCEDC 247
>TC10796 similar to GB|AAO64916.1|29029074|BT005981 At5g53430 {Arabidopsis
thaliana;}, partial (5%)
Length = 519
Score = 28.9 bits (63), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 302 DGECRVLLIANRDIAKGERLYYDY 325
D E R++LIA +++ G+ L YDY
Sbjct: 5 DDESRIVLIAKTNVSTGDELTYDY 76
>TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (35%)
Length = 848
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Frame = +1
Query: 26 DVVCQKCNSGKSPTKL-LLCDNCDNGYHLFC--LTPILPSVPKSSWFCPSCSH 75
+ +C C + + + CD C+ +H C +TP K + CPSCSH
Sbjct: 247 ETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKP-YKCPSCSH 402
>BI420000
Length = 502
Score = 28.1 bits (61), Expect = 2.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 23 NDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLF 54
N DDV C C + LL C +CD G F
Sbjct: 317 NWDDVACPICLDFPHNSVLLQCSSCDKGCRAF 412
>TC17146 similar to UP|Q9FIB1 (Q9FIB1) Emb|CAB61744.1, partial (61%)
Length = 612
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 60 LPSVPKSSWFCPSCS---HNPKIPKFPLVQTKIIDFFKIQRTSDASQILNHEEEK 111
LPS +S + CP+CS H+ F ++ I KI S +S +++H +EK
Sbjct: 33 LPSHSRSLFLCPACSL*IHHTTRDCFRVLTLTHIPHLKI---SKSSSLMDHRKEK 188
>TC15130 similar to UP|O81488 (O81488) F9D12.13 protein, partial (26%)
Length = 583
Score = 27.7 bits (60), Expect = 2.9
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = +3
Query: 26 DVVCQKCNSGKSPTKL-LLCDNCDNGYHLFC--LTPILPSVPKSSWFCPSCS 74
+ +C C + + + CD C+N +H C +TP K + CPSCS
Sbjct: 126 ETLCGACGENYASDEFWICCDICENWFHGKCVKITPARAEHIK-HYKCPSCS 278
>TC11218 similar to UP|Q941H0 (Q941H0) Trithorax 4 (Fragment), partial (26%)
Length = 535
Score = 27.3 bits (59), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 304 ECRVLLIANRDIAKGERLYYDY 325
E R++LIA ++ GE L YDY
Sbjct: 90 ESRIVLIAQTHVSAGEELTYDY 155
>TC15455
Length = 615
Score = 27.3 bits (59), Expect = 3.7
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Frame = -1
Query: 39 TKLLLCDNCDNGYHL-FCLTPILPSVPKS 66
T L L N + + L FCL P LP VPKS
Sbjct: 345 TSLSLFINVSSDFFLGFCLAPRLPKVPKS 259
>AV414247
Length = 264
Score = 26.6 bits (57), Expect = 6.4
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 2/32 (6%)
Frame = +1
Query: 58 PILPSVPKSSWFCPSCSHNPKIP--KFPLVQT 87
P+LPS P ++ P H+P +P FPL+ T
Sbjct: 46 PLLPSPPYTAAATPHYHHHPLLPFLFFPLITT 141
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.146 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,526,654
Number of Sequences: 28460
Number of extensions: 102934
Number of successful extensions: 673
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of query: 337
length of database: 4,897,600
effective HSP length: 91
effective length of query: 246
effective length of database: 2,307,740
effective search space: 567704040
effective search space used: 567704040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC141323.10