TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141323.1 + phase: 0 /pseudo
         (633 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE122516                                                               34  0.062
TC20135 ribosomal protein S12 [Lotus japonicus]                        27  10.0

>BE122516 
          Length = 364

 Score = 34.3 bits (77), Expect = 0.062
 Identities = 23/59 (38%), Positives = 29/59 (48%)
 Frame = +3

Query: 95  LRIKQ*LINYKWYAIFQKFFLMKFLMCLQREKLSFRLILFLERSLCL*HLIVCQLLSWP 153
           +R+ Q    Y W   F  + L K L   +REKLSF    FLE+   L*  I C   +WP
Sbjct: 180 IRVIQV*KEYPW*GNFPMYSLRKCLSYHRREKLSFL*TRFLEQDPSL*LHIGCHWWNWP 356


>TC20135 ribosomal protein S12 [Lotus japonicus]
          Length = 359

 Score = 26.9 bits (58), Expect = 10.0
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -2

Query: 88  P*WLPYLLRIKQ*LINYKWYAIFQKFFLMKFLMCLQREKLSFRLILFLERSL 139
           P*  P LLR++  L+NY  Y ++++ F        Q ++LS    L++ +SL
Sbjct: 265 P*PFPLLLRLQNVLVNYGQYRVYKQ*F--------QIQRLSVLWQLYVRQSL 134


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.382    0.171    0.711 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,846,157
Number of Sequences: 28460
Number of extensions: 175171
Number of successful extensions: 2924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 1342
length of query: 633
length of database: 4,897,600
effective HSP length: 96
effective length of query: 537
effective length of database: 2,165,440
effective search space: 1162841280
effective search space used: 1162841280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 58 (26.9 bits)