TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141114.8 - phase: 0 
         (239 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12486                                                                45  9e-08
BP046905                                                               27  2.4
BP045352                                                               27  3.2
AV416480                                                               26  5.4

>TC12486 
          Length = 742

 Score = 44.7 bits (104), Expect(2) = 9e-08
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +2

Query: 57  FADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYME 98
           F +  V V E RE++N RL   RQ L+ YGF L++SK EYME
Sbjct: 116 FCELYVEVRELREDINARLAICRQTLQTYGF*LNKSKAEYME 241



 Score = 26.9 bits (58), Expect(2) = 9e-08
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 31 LSPYLFTLVLDVLTEHIQELAPRCMLFAD 59
          LS Y F +VLD+L E I      CMLF +
Sbjct: 39 LSHYHFIVVLDMLIEQI*ATMQLCMLFVN 125


>BP046905 
          Length = 538

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -3

Query: 64  VGESREEVNGRLETWRQALEAYGF-----RLSRSKTEYMEWNFSGRRSRSTLEVKVGDHI 118
           V ++    NG  ET +   E Y F      +   + EYM    SG+  + +L+      I
Sbjct: 530 VFKTESPANGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDTIKEKKI 351

Query: 119 IPQVTRFKYLGSFV 132
             +++R+ +L SF+
Sbjct: 350 KKKLSRWFFLKSFI 309


>BP045352 
          Length = 434

 Score = 26.9 bits (58), Expect = 3.2
 Identities = 8/23 (34%), Positives = 16/23 (68%)
 Frame = -1

Query: 189 WAVKSQHENQVSVTEMRMLRWMS 211
           W++KSQ    ++++   +LRW+S
Sbjct: 407 WSIKSQRSKHMTISLNELLRWLS 339


>AV416480 
          Length = 410

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  RQALEAYGFRLSRSKTEYMEWNFSGRRSRSTLEVKVGDHII 119
           R  L AYG ++  S +EY++ N S   S      +V DH +
Sbjct: 208 RGGLGAYGGKILGSSSEYVQSNISRYFSDPQYYFQVNDHYV 330


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,020,964
Number of Sequences: 28460
Number of extensions: 52003
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of query: 239
length of database: 4,897,600
effective HSP length: 87
effective length of query: 152
effective length of database: 2,421,580
effective search space: 368080160
effective search space used: 368080160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)