BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.8 - phase: 0 /pseudo
(779 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089582 110 3e-40
AV427422 136 1e-32
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 100 2e-27
BP055130 106 1e-24
BF177840 91 9e-19
BP054462 90 1e-18
BP085845 60 2e-09
BP046863 57 1e-08
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 52 3e-07
BP033788 30 1.9
TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE... 28 4.3
TC13084 28 7.3
TC15349 homologue to UP|143C_SOYBN (Q96452) 14-3-3-like protein ... 27 9.6
TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eI... 27 9.6
>AU089582
Length = 383
Score = 110 bits (276), Expect(2) = 3e-40
Identities = 52/83 (62%), Positives = 66/83 (78%)
Frame = +2
Query: 473 AQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSE 532
+Q A+IY+ EIV LHGVP SI+SDR +FTS FW+S Q ALG++L++S+A+HPQTDGQSE
Sbjct: 14 SQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSE 193
Query: 533 RTIQSLEDLLRICVLEQGGTWDS 555
RTIQ LED+LR CV + G S
Sbjct: 194 RTIQILEDMLRACVXDLRGXLGS 262
Score = 72.4 bits (176), Expect(2) = 3e-40
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = +3
Query: 551 GTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFE 593
G+WD +L L+EF YNNSY SSI MA FEALYGRRCR+P+ WFE
Sbjct: 249 GSWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFE 377
>AV427422
Length = 417
Score = 136 bits (343), Expect = 1e-32
Identities = 64/136 (47%), Positives = 95/136 (69%)
Frame = +1
Query: 438 TSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDR 497
T LP + +G +A+ V+VDRL+K +HF+P+ + +A+I+++E+V+LHGVP SIVSDR
Sbjct: 4 TGLPKS-KGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDR 180
Query: 498 DPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHL 557
DP F S FWK L + G+KL++S+AYHP++DGQ+E + LE LR + +Q +W +
Sbjct: 181 DPLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWV 360
Query: 558 PLIEFTYNNSYHSSIG 573
P E+ YN SYH S G
Sbjct: 361 PWAEYWYNTSYHVSTG 408
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 99.8 bits (247), Expect(2) = 2e-27
Identities = 48/79 (60%), Positives = 63/79 (78%)
Frame = +3
Query: 648 RVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 707
RV+PM GV R K KL+P+FIGP+ +LERVG+V+YR+ LPP LS +H VFHVS LRKY+
Sbjct: 3 RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182
Query: 708 PDPSHVIQSDDVQVRDNLT 726
DPSHVI+ +DVQ+ +L+
Sbjct: 183 YDPSHVIRHEDVQLDVHLS 239
Score = 40.4 bits (93), Expect(2) = 2e-27
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 745 KEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
K++ V+V+W G +GE TWE E M E YP LF
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397
>BP055130
Length = 567
Score = 106 bits (265), Expect(2) = 1e-24
Identities = 55/112 (49%), Positives = 72/112 (64%)
Frame = +2
Query: 446 GSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRF 505
G I V+VDRL+K HF P ++ +Q+AE ++ IVKLHG+P +IVSDRD FTS F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 506 WKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHL 557
WK + G+ L +SS+YHPQTDGQ+E + LE LR V E W S+L
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
Score = 24.3 bits (51), Expect(2) = 1e-24
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +3
Query: 557 LPLIEFTYNNSYHSSIG 573
LP E+ YN+S+ +SIG
Sbjct: 516 LPWAEYCYNSSFQTSIG 566
>BF177840
Length = 410
Score = 90.5 bits (223), Expect = 9e-19
Identities = 51/130 (39%), Positives = 73/130 (55%)
Frame = +2
Query: 491 SSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG 550
+SIVSDRD +F S FW++L +G+KL S+ HPQTDGQ+E ++L LLR +
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 551 GTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTE 610
W++ LP IEF YN HS+ + FE +YG TPL +L + + E
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLPMPNTYLLKHKDGKAKAE 370
Query: 611 KVQMIREKMK 620
V+ + EK+K
Sbjct: 371 FVKRLHEKIK 400
>BP054462
Length = 422
Score = 90.1 bits (222), Expect = 1e-18
Identities = 49/141 (34%), Positives = 84/141 (58%), Gaps = 1/141 (0%)
Frame = +1
Query: 565 NNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQS 624
N++Y+ S M+ F+ALYGR L ++ ++ E + +R + SQ
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 625 RQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK-SKKLTPKFIGPYHILERVGTVAY 683
++Y +K+R+D++++ GD +FL++ P A K ++KL+P++ GPY I+ ++G VAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 684 RVGLPPHLSNLHNVFHVSQLR 704
R+ LP H S +H VFHVS L+
Sbjct: 361 RLELPAH-SRVHPVFHVSLLK 420
>BP085845
Length = 464
Score = 59.7 bits (143), Expect = 2e-09
Identities = 36/106 (33%), Positives = 57/106 (52%)
Frame = -2
Query: 660 KSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDV 719
K +K K IGP+ ILE V +AY + +L H V HV+ L + + D S I + V
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242
Query: 720 QVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWE 765
+ ++ + P+ + D KV+ +R K I V+V+W G +G +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104
>BP046863
Length = 580
Score = 57.0 bits (136), Expect = 1e-08
Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Frame = +1
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRAL-KSK 662
++++ + +R + +Q + ++ +K R+ ++++ G+ +FL++ P A K++
Sbjct: 274 LIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQ 453
Query: 663 KLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRK 705
KL+P+F GP+ +LERV VAY + L S +H VFH+S L K
Sbjct: 454 KLSPRFYGPFKVLERVVQVAY*LDLXSE-SRVHPVFHLSLLEK 579
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/90 (31%), Positives = 47/90 (52%)
Frame = +2
Query: 500 RFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPL 559
+FTS+ + + +G ++R SS HPQT+GQ+E + + ++ + E G W LP+
Sbjct: 20 QFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPI 199
Query: 560 IEFTYNNSYHSSIGMASFEALYGRRCRTPL 589
+ ++YN SSI F YG P+
Sbjct: 200 VLWSYNTMPQSSIKETPF*LTYGADTMLPV 289
>BP033788
Length = 518
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (57%)
Frame = +3
Query: 507 KSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
KSLQ G++++L + P+ D ERT+Q D +I V ++
Sbjct: 75 KSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEVAQE 203
>TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;}, partial (24%)
Length = 585
Score = 28.5 bits (62), Expect = 4.3
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 292 QSVKLGMLKIDSEFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIP 351
+ VK G + S ++ I + +DV + + R+ E ++ + F + +P
Sbjct: 30 KGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKERLE-----ENEREFVVHVPLP 194
Query: 352 DNEEIKKMILEESHRSSLS 370
D +EI+KM+LE+ L+
Sbjct: 195 DEKEIEKMVLEKKKMELLN 251
>TC13084
Length = 508
Score = 27.7 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +1
Query: 327 DQTEDIDFKIDDQGVLRFRGRICI 350
+ TED D+ +++ RFRGR CI
Sbjct: 160 NMTEDSDYDEEEEDYPRFRGRYCI 231
>TC15349 homologue to UP|143C_SOYBN (Q96452) 14-3-3-like protein C (SGF14C),
complete
Length = 1149
Score = 27.3 bits (59), Expect = 9.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 744 GKEIPLVRVVWSGATGESLTWELESKMLESYP*LFT 779
G EI LV VVW +G LTW +ML ++T
Sbjct: 1039 GVEIALVGVVWL*FSGLLLTWIFPKRMLACIQLVYT 1146
>TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eIF4A-15,
complete
Length = 1563
Score = 27.3 bits (59), Expect = 9.6
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Frame = +2
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYH---DKRRKDL---EFKEGDHMFLRVTPMTGVGR 657
I T KV + +KM+++ + H D+ +D+ EF+ G L T + G
Sbjct: 938 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 1117
Query: 658 ALKSKKLTPKF---IGPYHILERVGTVAY--RVGLPPHLSNLHNVFHVSQLRKYVPDPSH 712
++ L + P + L R+G R G+ + L + +S ++K+
Sbjct: 1118 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFY----- 1282
Query: 713 VIQSDDVQVRDNLTVETLPLRIDD 736
N+TVE LP + D
Sbjct: 1283 -----------NVTVEELPSNVAD 1321
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,353,680
Number of Sequences: 28460
Number of extensions: 211052
Number of successful extensions: 1462
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of query: 779
length of database: 4,897,600
effective HSP length: 97
effective length of query: 682
effective length of database: 2,136,980
effective search space: 1457420360
effective search space used: 1457420360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141111.8