TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141111.6 - phase: 0 /pseudo
         (379 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7915 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete     668  0.0
TC7914 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete     647  0.0
TC12695 similar to UP|Q9SAK1 (Q9SAK1) T8K14.10, partial (17%)          28  1.9
AV406847                                                               28  1.9
AV774501                                                               27  4.3
TC19666                                                                27  4.3
TC17545                                                                27  5.6
TC9180                                                                 26  9.6

>TC7915 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete
          Length = 1622

 Score =  668 bits (1724), Expect(2) = 0.0
 Identities = 321/356 (90%), Positives = 343/356 (96%)
 Frame = +2

Query: 1   MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTG 60
           MDY N PGR+HLFVPGPVNIP+QVIRAM+RNNEDYR+PAIPALTKTLLEDVKKIFKTTTG
Sbjct: 143 MDYFNAPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTTTG 322

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRG 120
           TPFLIPTTGTGAWESALTNTLSPGDR VSF+IGQFSLLW+DQQQRL FNVDVVESEWGRG
Sbjct: 323 TPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRG 502

Query: 121 ADLDILESKLASDSAHTIKAICIVHNETATGVTNNLAKVRQLLDAYQHPALLLVDGVSSI 180
           ADLD+LESKLASDSAHTIKAICIVHNETATGVTN+L+KVR+LLDAY HPALL+VDGVSSI
Sbjct: 503 ADLDVLESKLASDSAHTIKAICIVHNETATGVTNDLSKVRKLLDAYNHPALLIVDGVSSI 682

Query: 181 CALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKF 240
           CALDFRMDEWGVDVAITGSQKALSLPTG+G V ASPKA+EASK AKSLRVFFDW DYLKF
Sbjct: 683 CALDFRMDEWGVDVAITGSQKALSLPTGMGIVCASPKALEASKYAKSLRVFFDWKDYLKF 862

Query: 241 YKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQE 300
           Y+MGTYWPYTPSIQLLYGLR ALDL+FEEGLEN+ ARH RLG ATR+AVEAWGLKNCTQ+
Sbjct: 863 YEMGTYWPYTPSIQLLYGLRTALDLLFEEGLENVFARHKRLGKATRIAVEAWGLKNCTQK 1042

Query: 301 EEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE 356
           EEWFSDTVTAVVVPPYIDGAE+V+R+WKRYN+SLGLGLNKVAGKVFRIGHLGNLNE
Sbjct: 1043EEWFSDTVTAVVVPPYIDGAEVVKRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNE 1210



 Score = 30.0 bits (66), Expect(2) = 0.0
 Identities = 15/19 (78%), Positives = 16/19 (83%)
 Frame = +3

Query: 360  EVELLLPVHTYRTIFLSSL 378
            EVELLLPVHT RT+ L SL
Sbjct: 1281 EVELLLPVHTCRTLSL*SL 1337


>TC7914 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete
          Length = 1532

 Score =  647 bits (1669), Expect(2) = 0.0
 Identities = 309/352 (87%), Positives = 336/352 (94%)
 Frame = +2

Query: 5   NGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFL 64
           N PGR+HLFVPGP NIP+QVIRAM+RNNEDYR+PAIPALTKTLLEDVKKIFKT+TG PFL
Sbjct: 149 NAPGRHHLFVPGPTNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTSTGIPFL 328

Query: 65  IPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRGADLD 124
            PTTGTGAWESALTNTLSPGDRIVSF+IGQFSLLW+DQQQRL FNVDVVES+WG+GA+LD
Sbjct: 329 FPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLD 508

Query: 125 ILESKLASDSAHTIKAICIVHNETATGVTNNLAKVRQLLDAYQHPALLLVDGVSSICALD 184
           +LESKLASD  HTIKAICIVHNETATGVTNNLAKVR++LD YQHPALL+VDGVSSICALD
Sbjct: 509 VLESKLASDRTHTIKAICIVHNETATGVTNNLAKVRKILDDYQHPALLIVDGVSSICALD 688

Query: 185 FRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMG 244
           FRMDEWGVDVA+TGSQKALSLPTG+G V A PKAIEASKSAKSLRVFFDW+DYLKFYK+G
Sbjct: 689 FRMDEWGVDVAVTGSQKALSLPTGLGIVCAGPKAIEASKSAKSLRVFFDWNDYLKFYKLG 868

Query: 245 TYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQEEEWF 304
           TYWPYTPSIQLLYGLR ALDLIFEEGL+N+I RH RLG ATRLAVEAWGLKNCTQ+EEW+
Sbjct: 869 TYWPYTPSIQLLYGLREALDLIFEEGLDNVILRHKRLGHATRLAVEAWGLKNCTQKEEWY 1048

Query: 305 SDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE 356
           SDTVTAV+VPPYID AE+VRR+WKRYN+SLGLGLN+VAGKVFRIGHLGNLNE
Sbjct: 1049SDTVTAVLVPPYIDAAEVVRRSWKRYNMSLGLGLNQVAGKVFRIGHLGNLNE 1204



 Score = 29.6 bits (65), Expect(2) = 0.0
 Identities = 15/19 (78%), Positives = 16/19 (83%)
 Frame = +3

Query: 360  EVELLLPVHTYRTIFLSSL 378
            EVELLL VHT+R IFL SL
Sbjct: 1275 EVELLLLVHTFRIIFL*SL 1331


>TC12695 similar to UP|Q9SAK1 (Q9SAK1) T8K14.10, partial (17%)
          Length = 571

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 302 EWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSL-GLGLNKVAGKVFRIG 349
           +W   TVT++ VPP   GA  +    K    S+  +G + V  K + IG
Sbjct: 195 QWLGSTVTSIAVPPKSQGASTILGVLKIAIKSIRSMGQHSVGLKAWAIG 49


>AV406847 
          Length = 415

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 38  PAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSP 83
           P  P+ T +L   V   F  TT  PF  P T T      L +TLSP
Sbjct: 213 PRAPSHTPSLRTSVPPSFA*TTVAPFPSPPTATPRASLKLYSTLSP 350


>AV774501 
          Length = 514

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 279 NRLGTATRLAVEAWGLKNCTQEEEWFS 305
           +R   +   +V+ W L+ C++++ WFS
Sbjct: 311 SRTSLSLHFSVDPWELRLCSEDDSWFS 231


>TC19666 
          Length = 521

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = +1

Query: 314 PPYIDGAEIVRRAWKRYNLSLGLGLNKVAGK 344
           PP   G++  R  WKR+ L L LG +++  K
Sbjct: 94  PPLHLGSQHTRTIWKRFTLELLLGASEILQK 186


>TC17545 
          Length = 465

 Score = 26.9 bits (58), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 247 WPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRL 281
           WP+TPS Q+L+  R    +  E  LE    +H ++
Sbjct: 258 WPHTPSKQVLH-FRTITSIKMESKLEGSFGQHEKI 157


>TC9180 
          Length = 724

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 25  IRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWE 74
           +R + R+    + P    +T T++   K  F  T  T FL  TTG G+W+
Sbjct: 679 LRKVERDTNQAQGPEKTRITITII--CKN*F--TKATSFLF*TTGVGSWD 542


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,446,641
Number of Sequences: 28460
Number of extensions: 81527
Number of successful extensions: 319
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of query: 379
length of database: 4,897,600
effective HSP length: 92
effective length of query: 287
effective length of database: 2,279,280
effective search space: 654153360
effective search space used: 654153360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)