TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141111.3 + phase: 0 /pseudo
         (64 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV422239                                                               42  2e-05
BP039174                                                               40  9e-05
AV770033                                                               30  0.091
AV425299                                                               26  1.3
AV427280                                                               26  1.7
TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-l...    26  1.7
AV775484                                                               25  2.9
AV421386                                                               25  3.8
BP040806                                                               24  5.0
TC8359 similar to UP|Q39436 (Q39436) SIEP1L protein precursor, p...    23  8.6
TC9595 similar to UP|Q946U9 (Q946U9) 5-enolpyruvylshikimate-3-ph...    23  8.6

>AV422239 
          Length = 387

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +2

Query: 3   IVVYNTMITGYGKASNMDGAEGVFLTLGGRIEPDETSYRSMIEGWGRAGNYEK 55
           +  +N +++   K+ N+  A+ +F ++ GR EPD  +Y  ++EGWG+  N  K
Sbjct: 227 LAAFNGLLSALCKSRNVRKAQEIFDSMKGRFEPDLKTYSILLEGWGKDPNLPK 385


>BP039174 
          Length = 564

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -2

Query: 5   VYNTMITGYGKASNMDGAEGVF--LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
           VY  ++  Y +  N +GA+ VF  + L G I PD+     +I+ +G AG  EKAR  +E 
Sbjct: 554 VYKALLRAYSRIGNAEGAQRVFDAIQLAGII-PDDKICGLVIKAYGMAGQSEKARIAFEN 378

Query: 63  LK 64
           +K
Sbjct: 377 MK 372


>AV770033 
          Length = 298

 Score = 30.0 bits (66), Expect = 0.091
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 3   IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAG 51
           ++ YN ++ G  K   +  A  V   +  +   P+ET+Y  ++EG G AG
Sbjct: 268 VISYNIVLLGLSKVHRISDAIEVLAAMVDKGCRPNETTYTLLVEGIGYAG 119


>AV425299 
          Length = 323

 Score = 26.2 bits (56), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 13 YGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGN 52
          Y K  N++ A+  F  L  +  +PD   Y SMI G+  AG+
Sbjct: 57 YCKVGNLERAKEAFEVLTRKGFQPDIKVYNSMIMGYVNAGD 179


>AV427280 
          Length = 268

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   YNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
           YN ++  Y ++   +   GV   +    + PD  SYR  I  +G   + E      EE++
Sbjct: 60  YNNIMCLYAQSDQHEKVPGVLAMMKEDGVSPDIFSYRVCINSYGARSDLENMEKLLEEIE 239


>TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-like,
           partial (4%)
          Length = 560

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 15/49 (30%), Positives = 26/49 (52%)
 Frame = -3

Query: 16  ASNMDGAEGVFLTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
           A +M+ A  VF  +    +PD   + +MI G+G     EKA  +Y+ ++
Sbjct: 210 AGDMNYAVSVFDRVD---KPDAFLWNTMIRGFGNTNQPEKAVLFYKRMQ 73


>AV775484 
          Length = 373

 Score = 25.0 bits (53), Expect = 2.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 47 WGRAGNYEKARW 58
          WG  GNYE A W
Sbjct: 2  WGGQGNYENAHW 37


>AV421386 
          Length = 312

 Score = 24.6 bits (52), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 5   VYNTMITGYGKASNMD 20
           +YN +I G+GKA  +D
Sbjct: 205 IYNILINGFGKAGKID 252


>BP040806 
          Length = 534

 Score = 24.3 bits (51), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   VVYNTMITGYGKASNMDGAEGVFLTL 29
           V  N +++GYGKA   D  E V  ++
Sbjct: 409 VTQNIVLSGYGKAGKFDQMEKVLSSM 486


>TC8359 similar to UP|Q39436 (Q39436) SIEP1L protein precursor, partial
           (50%)
          Length = 767

 Score = 23.5 bits (49), Expect = 8.6
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
 Frame = +1

Query: 1   MCIVVYNTMITGYGKASNMDGAEGVFLTLGGRIEPDETS------------YRSMIEGWG 48
           +C+   N      G +     A  +  T   R+EP  TS                I  W 
Sbjct: 250 LCVWASNARSRSSGGSGRPTEATQLKKTPPSRLEPTVTSCLPTLTAESRGKQTPPIRAWW 429

Query: 49  RAGNYEKARWYY 60
           R+G ++ A W Y
Sbjct: 430 RSGYFQMATWCY 465


>TC9595 similar to UP|Q946U9 (Q946U9) 5-enolpyruvylshikimate-3-phosphate
           synthase B  (3-phosphoshikimate
           1-carboxyvinyltransferase) (EPSP synthase) (EPSPS) ,
           partial (48%)
          Length = 1099

 Score = 23.5 bits (49), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 24  GVFLTLGGRIEPDETSYRSMIEGWG 48
           G   TLG  +E D+ + ++++EG G
Sbjct: 542 GALRTLGLHVEDDKATKQAIVEGCG 616


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,025,711
Number of Sequences: 28460
Number of extensions: 8301
Number of successful extensions: 43
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of query: 64
length of database: 4,897,600
effective HSP length: 40
effective length of query: 24
effective length of database: 3,759,200
effective search space: 90220800
effective search space used: 90220800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)