BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.1 - phase: 0 /pseudo
(584 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP058026 30 1.4
TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transc... 29 1.9
CB828458 29 1.9
BP074150 28 3.2
TC12624 weakly similar to UP|O95989 (O95989) DIPHOSPHOINOSITOL p... 28 3.2
TC17133 28 4.1
TC15709 similar to UP|Q9LFG2 (Q9LFG2) Diaminopimelate epimerase-... 28 4.1
AW719661 28 4.1
AV779571 28 5.4
TC19723 27 7.0
TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , p... 27 7.0
BP085186 27 7.0
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 27 7.0
TC8475 similar to UP|GAL1_ARATH (Q9SEE5) Galactokinase (Galacto... 27 9.2
AV408212 27 9.2
BP033858 27 9.2
>BP058026
Length = 389
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/30 (43%), Positives = 25/30 (83%)
Frame = -2
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLL 359
+ ++L++LL LLLL+L+L + LLL ++F++
Sbjct: 91 IKSLLLLLLLLLLLLLLLLLLLLLLLLFMI 2
>TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transcription
factor PosF21 (AtbZIP59), partial (17%)
Length = 570
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -1
Query: 339 *LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQL 377
*LL+L L+L + LLL +++ W+L L+ + WL KL L
Sbjct: 243 *LLMLFLLLLLHLLLWLLY--WLLLLLLLLLNWLLKLML 133
>CB828458
Length = 516
Score = 29.3 bits (64), Expect = 1.9
Identities = 25/66 (37%), Positives = 36/66 (53%)
Frame = +2
Query: 209 GRARDSIVVLSRTVPPLTKGNKRWSMLGGLRRRMLQRLCASIVVRKATRATPVLRKSRSV 268
GR RDS+VV+ + + +GN+R GLR R Q L R+ATRA S+S
Sbjct: 305 GRGRDSLVVIGCWIL-VPRGNRRLLTGAGLRGRFGQCLSR----REATRAA-----SQST 454
Query: 269 SGVVRR 274
+G+ R+
Sbjct: 455 AGM*RK 472
>BP074150
Length = 393
Score = 28.5 bits (62), Expect = 3.2
Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Frame = +1
Query: 207 MRGRARDSIVVLSRTVPPLTKG-NKRW--SMLGGLRRRMLQ 244
+R R S +VLS PP G +RW + GG RRR+L+
Sbjct: 241 IRQEERKSFLVLSSVSPPAKDGWRRRWLAAGSGGFRRRLLE 363
>TC12624 weakly similar to UP|O95989 (O95989) DIPHOSPHOINOSITOL
polyphosphate phosphohydrolase (NUDIX (Nucleoside
diphosphate linked MOIETY X)-type motif 3), partial
(17%)
Length = 641
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/65 (27%), Positives = 30/65 (45%)
Frame = +1
Query: 467 WLLYLLRIKQ*LIGYRWCVNFLKFFRMRFLMCLQRGKSSFLLILFLERRRSRWHLIVCLL 526
WLLY+ G+ + F + FL C SS ++L E + + L++ LL
Sbjct: 13 WLLYMN-------GHHLLHHAENFLSLSFLFCFSIHGSSVFILLKKEGKEGPYLLLLLLL 171
Query: 527 QNYPS 531
++PS
Sbjct: 172 LSFPS 186
>TC17133
Length = 556
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -3
Query: 47 EPRRGLRRLRGFSGLCSARRIRKCGLVLISWP 78
+PR L +G GL RR R+ G+ + WP
Sbjct: 284 DPRSRLTCRQGPPGLARCRRFRRSGVARVRWP 189
>TC15709 similar to UP|Q9LFG2 (Q9LFG2) Diaminopimelate epimerase-like
protein (AT3g53580/F4P12_280), partial (37%)
Length = 694
Score = 28.1 bits (61), Expect = 4.1
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = -2
Query: 81 LMTGGLLFCLPLSRRELL*LGLFSGGSS*EDTFRKMFAGRRR 122
++TG + +RREL *L + GG+ E+ +++ AGR R
Sbjct: 252 VLTGASVLMEEATRRELR*LKVRCGGAKEEEERKRLTAGRER 127
>AW719661
Length = 263
Score = 28.1 bits (61), Expect = 4.1
Identities = 20/38 (52%), Positives = 23/38 (59%), Gaps = 1/38 (2%)
Frame = -1
Query: 48 PRRGLRRLRGFSGLCSARRIRK-CGLVLISWPRKLMTG 84
PR+G RR R SGL +RRIR+ CG SWP TG
Sbjct: 254 PRKGRRRRRLSSGL--SRRIRRHCGR---SWPGGRKTG 156
>AV779571
Length = 538
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = -2
Query: 331 LAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLL 384
+A L+I+ LLL +L+L + LLL ++ +L + + M L K++LR++ LL+
Sbjct: 333 IANLLIIYHLLLSLLLLLLLLLLIVIMILSLTIE*VLML*VLLKMRLRLQQLLI 172
>TC19723
Length = 547
Score = 27.3 bits (59), Expect = 7.0
Identities = 20/53 (37%), Positives = 33/53 (61%), Gaps = 4/53 (7%)
Frame = +3
Query: 317 LGLRQKMRIV*SEVLAILIILL*LLLLILVLRIALLLSI----VFLLWVLSCL 365
LGLR ++ + +L +L+ +L+ IL +R+ ++LS+ VFLLW LS L
Sbjct: 60 LGLRHRISRHRRC*MRLLGLLIWVLVAILGIRL*MVLSLCWRRVFLLWCLSPL 218
>TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial
(89%)
Length = 1672
Score = 27.3 bits (59), Expect = 7.0
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 330 VLAILIILL*LLLLILVLRIALLL 353
+L +L++LL LLLL+L+L++ LLL
Sbjct: 233 LLLLLLLLLLLLLLLLLLQLLLLL 162
>BP085186
Length = 388
Score = 27.3 bits (59), Expect = 7.0
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 331 LAILIILL*LLLLILVLRIALLLSIVFL 358
L ++++LL LLLL+L+L + LLL + FL
Sbjct: 184 LPLVLLLLLLLLLLLLLLLLLLLLLHFL 267
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 27.3 bits (59), Expect = 7.0
Identities = 38/123 (30%), Positives = 58/123 (46%), Gaps = 10/123 (8%)
Frame = -3
Query: 237 GLRRRMLQRLCASIVVRKATRATPVLRKSRSVSGVVRRVML*LIAIVQTLCALIAMERVT 296
GLR +LQR + V R+ T V +G+VRR++ T+ + + R+
Sbjct: 361 GLRSLILQR*FVTAVRRRVILRTVV---PT*YAGIVRRLV--------TVVRIAQIPRLR 215
Query: 297 LVLNVLSLRGRRLLV----GFSL*LGLRQKMRIV*SEVL------AILIILL*LLLLILV 346
L+L +L L G+ LL+ G L L Q + +E++ I+ L*L L LV
Sbjct: 214 LLLMLLLLGGQPLLLIKGRGLLLVLEFIQLAVLSPTELMD*FGASGA*IVNL*LYFLTLV 35
Query: 347 LRI 349
LRI
Sbjct: 34 LRI 26
>TC8475 similar to UP|GAL1_ARATH (Q9SEE5) Galactokinase (Galactose kinase)
, partial (86%)
Length = 1662
Score = 26.9 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +2
Query: 333 ILIILL*LLLL------ILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQ 376
+L+ LL* L+L +L L + +++ ++ +W+L CL+* W K Q
Sbjct: 779 LLVGLL**LILWRSLRRLLPLPLIIIIGLLNAIWLLLCLL*S*EWNQKKQ 928
>AV408212
Length = 362
Score = 26.9 bits (58), Expect = 9.2
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = -1
Query: 329 EVLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLL 384
E+ +I +LL*L LL+L L + LLL ++ LL +L M L L V LLL
Sbjct: 197 EMCSIPTLLL*LWLLLL*LLLLLLLLLLLLLLLLLLESCMPLQQDLLHLHVLLLLL 30
>BP033858
Length = 533
Score = 26.9 bits (58), Expect = 9.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 500 QRGKSS-FLLILFLERRRSRWHLIVCLLQNYPS*RNSWRTC*KRSLLDQVFHLGERRF 556
QR +SS +L++L+ S WH++ + Q + SWR C +L V HL + +
Sbjct: 245 QRKRSSRYLIVLW-----SGWHILELMPQRVIASGASWRVC---RILSPVLHLQQELY 394
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.364 0.163 0.577
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,423,065
Number of Sequences: 28460
Number of extensions: 187028
Number of successful extensions: 2932
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 1846
length of query: 584
length of database: 4,897,600
effective HSP length: 95
effective length of query: 489
effective length of database: 2,193,900
effective search space: 1072817100
effective search space used: 1072817100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC141111.1