BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141110.2 - phase: 0
(262 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14679 similar to UP|FLA7_ARATH (Q9SJ81) Fasciclin-like arabino... 296 2e-81
AU251428 133 4e-32
TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like... 125 6e-30
TC14324 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan pro... 122 8e-29
TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like... 100 2e-22
TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-li... 89 1e-18
AV774474 84 2e-17
TC9626 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan prot... 62 8e-11
TC15809 weakly similar to PIR|JN0747|JN0747 histone H1-I - Volvo... 62 1e-10
TC14342 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan pro... 62 1e-10
AV768218 54 3e-08
TC14341 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabino... 49 1e-06
TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellu... 47 4e-06
TC13019 45 1e-05
AV413145 42 1e-04
TC14428 weakly similar to UP|Q9SP59 (Q9SP59) Arabinogalactan pro... 40 3e-04
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 37 0.003
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 37 0.005
TC14429 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan pro... 36 0.006
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 36 0.008
>TC14679 similar to UP|FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan
protein 7 precursor, partial (50%)
Length = 724
Score = 296 bits (758), Expect = 2e-81
Identities = 147/179 (82%), Positives = 164/179 (91%)
Frame = +2
Query: 83 EEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTF 142
EEGITIFVPKDSSF++LKKPSLSKL D++KQVILFHALP +YSLADFKNLSQT STPTF
Sbjct: 2 EEGITIFVPKDSSFSALKKPSLSKLTSDQLKQVILFHALPKYYSLADFKNLSQTGSTPTF 181
Query: 143 AGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVL 202
AGG Y+LNFTD+SGTV INSGWS TKVTSAVH+TDPVAIY+V KVLLPEA+FGTDIPP
Sbjct: 182 AGGSYSLNFTDDSGTVHINSGWSKTKVTSAVHSTDPVAIYEVGKVLLPEAVFGTDIPPTP 361
Query: 203 APAPTPEIAPAADSPTEQSADSKSSSPSSSPDRSSSYKIVSYGIWGNLVLATFGLVVVI 261
APAP PEIAPAADSP E+SADSK+SSP SSPD SSSYKI+SYGIWGNLVLATFG++ ++
Sbjct: 362 APAPAPEIAPAADSPIEKSADSKASSP-SSPDGSSSYKILSYGIWGNLVLATFGVLAML 535
>AU251428
Length = 327
Score = 133 bits (334), Expect = 4e-32
Identities = 71/84 (84%), Positives = 77/84 (91%), Gaps = 1/84 (1%)
Frame = +2
Query: 1 MKVSMIFLVS-TLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPF 59
M+ SMIF++S TLLLLSSSAFAKTVSPPSPP SPTPAPAPAP DFVNLTELL VAGPF
Sbjct: 83 MEFSMIFILSNTLLLLSSSAFAKTVSPPSPPL-SPTPAPAPAP--DFVNLTELLAVAGPF 253
Query: 60 HTFLQYLQSTKVLDTFQNQANNTE 83
HTFL+YL+STKV+DTFQNQANNTE
Sbjct: 254 HTFLEYLESTKVIDTFQNQANNTE 325
>TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like
arabinogalactan-protein 9 {Arabidopsis thaliana;},
partial (38%)
Length = 942
Score = 125 bits (315), Expect = 6e-30
Identities = 69/203 (33%), Positives = 115/203 (55%), Gaps = 1/203 (0%)
Frame = +3
Query: 37 APAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSF 96
APAPAP+ VNLT +L AG + T ++ L+ ++ L ++Q N+T +G T+F P D++F
Sbjct: 93 APAPAPSGP-VNLTAILEKAGQYTTLIRLLKESQQLTQIESQLNSTTQGFTLFAPTDNAF 269
Query: 97 ASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTAST-PTFAGGDYTLNFTDNS 155
+LK +++ L DD+ ++IL+H P +YSL+D + +S T + G + LNF
Sbjct: 270 QNLKSGAINDLTDDQKVKLILYHVTPKYYSLSDLQTVSNPVRTQASEKEGSWGLNFKGQG 449
Query: 156 GTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAAD 215
V + +G T + + + P+AIYQVD+VLLP +FG P + AP+P+ +
Sbjct: 450 NQVNVTTGVVTTSINNDLRQQFPLAIYQVDRVLLPLELFGAKSP---SSAPSPKSSETTP 620
Query: 216 SPTEQSADSKSSSPSSSPDRSSS 238
S S+ K +PS + + +
Sbjct: 621 SDETPSSGKKGGAPSPAASQKDN 689
>TC14324 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan protein-like,
partial (63%)
Length = 1172
Score = 122 bits (305), Expect = 8e-29
Identities = 78/224 (34%), Positives = 120/224 (52%), Gaps = 1/224 (0%)
Frame = +3
Query: 31 AESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGITIFV 90
A SP PAP+ +PT ++ +L AG + T ++ LQ+T+V Q N+ G+T F
Sbjct: 174 ASSPAPAPSSSPT----DIIRILKKAGGYTTLIRLLQTTQVATQINAQLINSNAGLTFFA 341
Query: 91 PKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAGGD-YTL 149
P D++F++LK L+ L D + ++I FH LP F S+++F LS T D L
Sbjct: 342 PNDNAFSNLKPGFLNSLNDQQKNELIQFHLLPTFVSMSNFDTLSNPVRTQAGENPDRLAL 521
Query: 150 NFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPE 209
N T + TV + +G V +V++ + +A+YQVDKVLLP F P APAP PE
Sbjct: 522 NVTSSGNTVNMTTGIVNVTVGGSVYSDNQLAVYQVDKVLLPRDFFVAKPP---APAPAPE 692
Query: 210 IAPAADSPTEQSADSKSSSPSSSPDRSSSYKIVSYGIWGNLVLA 253
A A+ ++SAD + + D S++ + +WG L +A
Sbjct: 693 KAKAS---KKKSAD---DTEGPAGDDSAAVSVKQRLVWGPLPVA 806
>TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
partial (61%)
Length = 989
Score = 100 bits (250), Expect = 2e-22
Identities = 72/209 (34%), Positives = 107/209 (50%), Gaps = 3/209 (1%)
Frame = +2
Query: 28 SPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGIT 87
S P +P AP P+ VNLT L+ AG TF + S ++ TFQ+ A ++G+T
Sbjct: 5 SAPIIAPGVLSAPPPSSS-VNLTALIEKAG-CKTFASLVLSNGLIKTFQSAA---DKGLT 169
Query: 88 IFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAGG-- 145
IF P D +F + P LSKL + E+ ++ +HA+ + + K ST G
Sbjct: 170 IFAPSDEAFKARGVPDLSKLTNAEVVSLLQYHAVAKYLPVGSLKTTKDPISTLATNGAGK 349
Query: 146 -DYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAP 204
+YT++ +S V +++G ++V V + P++IY VD VLLP +F P AP
Sbjct: 350 FEYTVSVAGDS--VTLHTGVDSSRVADTVLDSTPLSIYSVDSVLLPPELFAKSPSP--AP 517
Query: 205 APTPEIAPAADSPTEQSADSKSSSPSSSP 233
AP P AP SP S S +S+PS P
Sbjct: 518 APEPASAP---SPAPASGPSPASAPSPLP 595
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/34 (52%), Positives = 24/34 (69%), Gaps = 2/34 (5%)
Frame = +2
Query: 13 LLLSSSAFAKTVSP-PSP-PAESPTPAPAPAPTP 44
+LL FAK+ SP P+P PA +P+PAPA P+P
Sbjct: 470 VLLPPELFAKSPSPAPAPEPASAPSPAPASGPSP 571
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +2
Query: 25 SPPSPPAESPTPAPAPAPT 43
SPP+P E+P APA AP+
Sbjct: 599 SPPAPAGETPDGAPADAPS 655
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 15 LSSSAFAKTVSPPSPPAESPTPAPAPAP 42
LS + + PP A+SP+PAPAP P
Sbjct: 446 LSIYSVDSVLLPPELFAKSPSPAPAPEP 529
>TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like, partial
(42%)
Length = 436
Score = 88.6 bits (218), Expect = 1e-18
Identities = 53/145 (36%), Positives = 82/145 (56%)
Frame = +3
Query: 2 KVSMIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHT 61
K ++ L+ LLL +T+S + A PAPA PT N+T++L AG F T
Sbjct: 15 KANLSHLLPLLLLNMFLFLFQTISAQTAAA----PAPA-GPT----NITQILEKAGQFTT 167
Query: 62 FLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHAL 121
F++ L++T+V D +Q NN+ +G+TIF P D++F+SLK +L+ + + Q+I FH L
Sbjct: 168 FIKILKATQVADRINSQLNNSNQGLTIFAPTDNAFSSLKPGTLNSINTQDQLQLIQFHIL 347
Query: 122 PHFYSLADFKNLSQTASTPTFAGGD 146
P YS++ F+ S T GD
Sbjct: 348 PTLYSMSQFETASNPLHTQAGNSGD 422
>AV774474
Length = 465
Score = 84.0 bits (206), Expect = 2e-17
Identities = 47/88 (53%), Positives = 60/88 (67%), Gaps = 2/88 (2%)
Frame = -3
Query: 164 WSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAP-TPEIAPAADSPTEQSA 222
WS T+ TSAVH+ DPVAIY+V KVLLPEA+FGTDIPP APAP + + P +SA
Sbjct: 463 WSKTQATSAVHSPDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPRSCTCTRSTILPLTKSA 284
Query: 223 DSKSSSPSSSPDRSSSY-KIVSYGIWGN 249
DS+++ SP +I+SYGIWG+
Sbjct: 283 DSQATLLHHSP*LVHLLTQILSYGIWGS 200
>TC9626 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan protein-like,
partial (24%)
Length = 605
Score = 62.4 bits (150), Expect = 8e-11
Identities = 46/149 (30%), Positives = 74/149 (48%), Gaps = 22/149 (14%)
Frame = +1
Query: 13 LLLSSSAFAKTVSPPSP---PAESPT-PAPA---PAPTPDFV--------------NLTE 51
LLL + F T+S SP P +SP P+PA PAP V ++ +
Sbjct: 94 LLLFAPIFFTTISAQSPAASPKKSPAKPSPASLAPAPAKPLVPSLPQSPSSDSSGQDIIK 273
Query: 52 LLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEG-ITIFVPKDSSFASLKKPSLSKLKDD 110
+L A F+T ++ L++T++++ Q T+ G +TI P D +F+ LK + L
Sbjct: 274 ILRKAKSFNTLIRLLKTTQIINQVNAQLVTTKNGGLTILAPDDGAFSQLKAGYFNSLDGR 453
Query: 111 EIKQVILFHALPHFYSLADFKNLSQTAST 139
+ K++I FH LP + S ++F LS T
Sbjct: 454 QQKELIQFHVLPQYVSSSNFDALSNPVLT 540
>TC15809 weakly similar to PIR|JN0747|JN0747 histone H1-I - Volvox carteri
{Volvox carteri;}, partial (10%)
Length = 526
Score = 62.0 bits (149), Expect = 1e-10
Identities = 45/146 (30%), Positives = 72/146 (48%), Gaps = 22/146 (15%)
Frame = +2
Query: 1 MKVSMIFLVSTLLLLSSSAFA----KTVSPPSPPAESPTP---APAPAP----------- 42
MK ++F S LL SS A +P SP PTP AP+P P
Sbjct: 92 MKQVVLFSFSLFFLLFSSTIAISPAPAAAPKSPAKTPPTPKATAPSPKPLVPTLPQSPDS 271
Query: 43 ---TPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEG-ITIFVPKDSSFAS 98
TPD ++T++L A F ++ L++T++++ +Q + G ITI P DS+F+
Sbjct: 272 SDSTPD--DITKILRKAKIFSVLIRLLKTTEIMNNINSQLITAKNGGITILAPDDSAFSH 445
Query: 99 LKKPSLSKLKDDEIKQVILFHALPHF 124
LK L+ L +++ ++ FH LP +
Sbjct: 446 LKAGFLNSLNENQKIELCQFHILPQY 523
>TC14342 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like,
partial (27%)
Length = 724
Score = 62.0 bits (149), Expect = 1e-10
Identities = 36/88 (40%), Positives = 49/88 (54%)
Frame = +2
Query: 145 GDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAP 204
G+Y LN T + V I +G T V++ +++ +A+YQV+KVLLP A+FG AP
Sbjct: 26 GEYPLNVTTSGNQVHITTGVVETTVSNTIYSDKTLAVYQVEKVLLPLALFGQ------AP 187
Query: 205 APTPEIAPAADSPTEQSADSKSSSPSSS 232
P P APA P + S S S SSS
Sbjct: 188 TPAPAEAPAPTQPEKNVRASDSPSGSSS 271
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +2
Query: 22 KTVSPPSPPAESPTPAPAPAPTP 44
K + P + ++PTPAPA AP P
Sbjct: 149 KVLLPLALFGQAPTPAPAEAPAP 217
>AV768218
Length = 424
Score = 53.9 bits (128), Expect = 3e-08
Identities = 38/85 (44%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = -3
Query: 180 AIYQVDKVLLPEAIFGTDIPPVLAPAPTPE---IAPAADSPTEQSADSKSSSP-SSSPDR 235
AIY+V KVLLP F P AP+ PE AP AD S DS SS SS+ +
Sbjct: 422 AIYKVGKVLLPMDFFAVAKAPAKAPSSAPEPSAEAPKADKEKPSSDDSSDSSQISSTSMK 243
Query: 236 SSSYKIVSYGIWGNLVLATFGLVVV 260
SSS KI + G W +LVL + VV
Sbjct: 242 SSSVKITTCGKWVSLVLGVALMTVV 168
>TC14341 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (9%)
Length = 636
Score = 48.5 bits (114), Expect = 1e-06
Identities = 26/74 (35%), Positives = 40/74 (53%), Gaps = 14/74 (18%)
Frame = -1
Query: 178 PVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPEIA--------------PAADSPTEQSAD 223
P+AI+ +DKVLLP+ +F P APAP P A AAD+P + S+D
Sbjct: 618 PLAIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPKTKAADAPADDSSD 439
Query: 224 SKSSSPSSSPDRSS 237
+ + SP + D+++
Sbjct: 438 APADSPDDAADQTA 397
>TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellular tumor
antigen {Homo sapiens;} , partial (6%)
Length = 468
Score = 46.6 bits (109), Expect = 4e-06
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Frame = +1
Query: 6 IFLVSTLLLLSSSAFAKTVSPPSPPAESP-TPAPAPA-------PTPDFVN--------L 49
IF ++TL S +A K + P+P SP TPAPAP+ P VN +
Sbjct: 118 IFSITTLAQ-SPAAAPKPPAKPAPTKPSPATPAPAPSKPLVPALPQSPMVNPDSSGNQDV 294
Query: 50 TELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEE-GITIFVPKDSSFASLK 100
++L A F+T ++ L++T++++ Q T+ G+TI P D +F+ LK
Sbjct: 295 VKILRKAKSFNTLIRLLKTTQIINQVNAQLVATKNGGLTILAPDDGAFSQLK 450
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +1
Query: 200 PVLAPAPT-PEIAPAADSPTEQSADSKSSSPSSSPDRSSSYKIV 242
P PAPT P A A +P++ + SP +PD S + +V
Sbjct: 166 PPAKPAPTKPSPATPAPAPSKPLVPALPQSPMVNPDSSGNQDVV 297
>TC13019
Length = 565
Score = 45.1 bits (105), Expect = 1e-05
Identities = 30/97 (30%), Positives = 47/97 (47%)
Frame = +1
Query: 147 YTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAP 206
+ LN T +V I++G +T V+ +AIY+VDKVL+P P +APAP
Sbjct: 1 FELNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIP---LDFKKPKPIAPAP 171
Query: 207 TPEIAPAADSPTEQSADSKSSSPSSSPDRSSSYKIVS 243
AP AD SA+ + + S + +++S
Sbjct: 172 ALAKAPKADK-ENSSAEDDDDQGQGTKNSSGANRLIS 279
>AV413145
Length = 397
Score = 41.6 bits (96), Expect = 1e-04
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Frame = +1
Query: 1 MKVSMIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTE--------- 51
+ +S+ LVS L ++ A S P PA PA AP P +L E
Sbjct: 28 LSLSLALLVSLLYSTTTLAQLSPASAPLQPAPPVPTTPASAPKPLVPSLPESPSDSTAPD 207
Query: 52 --------LLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEE-GITIFVPKDSSFASLK 100
+L A F+ ++ +++T++++ +Q + G+TI P DS+F+ LK
Sbjct: 208 TAAVDIVGILRKAKSFNVLIRLMKTTQLINQLNSQLLTIKTGGLTILAPDDSAFSELK 381
>TC14428 weakly similar to UP|Q9SP59 (Q9SP59) Arabinogalactan protein
Pop14A9, partial (15%)
Length = 573
Score = 40.4 bits (93), Expect = 3e-04
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +1
Query: 158 VKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAA--- 214
V I++G + V++ +A+Y VDKVLLP F T P LAP+ + + AA
Sbjct: 40 VNISTGVVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAPSLSAKAPKAAKEN 219
Query: 215 -----DSPTEQSADSKSSSPS 230
+ T Q D+KS + S
Sbjct: 220 SSAEDEDETNQDQDNKSGAVS 282
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 37.0 bits (84), Expect = 0.003
Identities = 41/156 (26%), Positives = 69/156 (43%), Gaps = 1/156 (0%)
Frame = -2
Query: 84 EGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFA 143
EG++ P SS +S +PSLS L LF P F S + S+P+ +
Sbjct: 444 EGLSSSSPP-SSESSSPEPSLSDL--------FLFDGTPAF------SPSSLSLSSPSSS 310
Query: 144 GGDYTLNFTDNSGTVKIN-SGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVL 202
G +L+ + +S + + +S+ K +S+ ++ + P PP
Sbjct: 309 SGSKSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSSSSGSPPP----PRPPST 142
Query: 203 APAPTPEIAPAADSPTEQSADSKSSSPSSSPDRSSS 238
P+ + + ++ SP ++ S SSSPSSS SSS
Sbjct: 141 PPSSSSSSSSSSSSPPPGASSSSSSSPSSSSPSSSS 34
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase
1;1, partial (16%)
Length = 486
Score = 36.6 bits (83), Expect = 0.005
Identities = 15/32 (46%), Positives = 24/32 (74%)
Frame = +1
Query: 12 LLLLSSSAFAKTVSPPSPPAESPTPAPAPAPT 43
LLL +SS+ + + SPP PP++ PT +P+ +PT
Sbjct: 31 LLLHTSSSSSSSYSPPPPPSQQPTHSPSTSPT 126
>TC14429 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like,
partial (19%)
Length = 530
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 158 VKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAA-DS 216
V I++G + V++ +A+Y VDKVLLP F T P LAP+ + AA ++
Sbjct: 5 VNISTGVVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAPSLSA*APKAAKEN 184
Query: 217 PTEQSADSKSSSP 229
+ + D + P
Sbjct: 185 SSAEDEDETNQDP 223
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = +3
Query: 15 LSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGP 58
LSS+A + PSPPA + +P PAP+P + +LT+ GP
Sbjct: 144 LSSAATVPSPPYPSPPAATSSPPPAPSPPAPPPPPSTILTLTGP 275
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,824,301
Number of Sequences: 28460
Number of extensions: 101135
Number of successful extensions: 4605
Number of sequences better than 10.0: 466
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3848
length of query: 262
length of database: 4,897,600
effective HSP length: 88
effective length of query: 174
effective length of database: 2,393,120
effective search space: 416402880
effective search space used: 416402880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC141110.2