TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141110.1 + phase: 0 /pseudo
         (143 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11934 similar to PIR|T08858|T08858 vacuolar protein-sorting pr...    31  0.093
TC8301                                                                 27  1.0
TC9039                                                                 26  2.3
AV779281                                                               26  3.0
BF177633                                                               25  5.1
TC17630 similar to GB|AAL57656.1|18086395|AY065011 AT5g13210/T31...    24  8.7

>TC11934 similar to PIR|T08858|T08858 vacuolar protein-sorting protein
           homolog A_TM017A05.7 -                Arabidopsis
           thaliana {Arabidopsis thaliana;} , partial (23%)
          Length = 762

 Score = 30.8 bits (68), Expect = 0.093
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
 Frame = +3

Query: 37  HEKKLYVLDGPIPEAP--PAGASAALRNAHAKH-------LNDSVEVSCIMLASMTPELQ 87
           H +K  +LDG   E     AG +   +N+   H       L D+++ S  ML+ +     
Sbjct: 132 HGEKEMMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKL 311

Query: 88  KQHEG----MTAFDMIEHLKTLYEEQAR 111
             H+     M AFD +  L+  +EE+AR
Sbjct: 312 SPHKYYELYMRAFDQLRKLEMFFEEEAR 395


>TC8301 
          Length = 1243

 Score = 27.3 bits (59), Expect = 1.0
 Identities = 27/110 (24%), Positives = 48/110 (43%)
 Frame = +2

Query: 15  EKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLNDSVEV 74
           E  K + +NF  W   ++ +L  +  L  +D         G  A + +   K ++D+  V
Sbjct: 515 EIPKFSGSNFSLWKLKIKAILRKDNCLPAID---------GRPADITDDKWKEMDDNA-V 664

Query: 75  SCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFST 124
           + + LA     L    E  TA ++ + L  LYE ++ H R    + L S+
Sbjct: 665 ANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRILKEETLNSS 814


>TC9039 
          Length = 1218

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   MANNASTNILRSLIEKEKLTE-TNFIDWSRNMRIVL 35
           MA++A+   + + +    + + TNF DW  NM IVL
Sbjct: 103 MAHSATIGSISANLNSVPILDGTNFKDWKENMEIVL 210


>AV779281 
          Length = 505

 Score = 25.8 bits (55), Expect = 3.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 12  SLIEKEKLTETNFIDWSRNMR-IVLTHEKKLYVLDGPIPEAPP 53
           +L+    L +TNF+ W +++  IV TH  + ++     P+ PP
Sbjct: 82  ALVHNAYLEDTNFLSWKQHVEGIVRTHRWQSFL---DHPDVPP 201


>BF177633 
          Length = 180

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 15/49 (30%), Positives = 29/49 (58%)
 Frame = +1

Query: 67  HLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERF 115
           H++  ++V   +L  +   +QK++  +T+F   E LKT  + +AR ER+
Sbjct: 16  HISQIIQVKS*IL--LQNWMQKRNWVLTSFSCQEVLKTELQMEARGERY 156


>TC17630 similar to GB|AAL57656.1|18086395|AY065011 AT5g13210/T31B5_30
           {Arabidopsis thaliana;}, partial (27%)
          Length = 625

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 47  PIPEAPPAGASAALRNAHAKHLNDSVEVS 75
           P+P+ PP G+ +  +  H +  N S  +S
Sbjct: 319 PMPQTPPWGSHSYSQTHHTQQYNSSSSLS 233


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,139,407
Number of Sequences: 28460
Number of extensions: 24149
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of query: 143
length of database: 4,897,600
effective HSP length: 82
effective length of query: 61
effective length of database: 2,563,880
effective search space: 156396680
effective search space used: 156396680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)