TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141107.11 + phase: 0 /pseudo
         (650 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase...   700  0.0
CN825301                                                              343  5e-95
TC9804 similar to UP|Q84RC5 (Q84RC5) Alpha-L-arabinofuranosidase...   150  5e-37
AU089495                                                              114  6e-26
TC15100 weakly similar to UP|BAC99303 (BAC99303) Alpha-L-arabino...   101  4e-22
AV418250                                                               28  4.6
TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protei...    28  4.6
TC11161                                                                28  4.6
AV773237                                                               27  7.9

>TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
           (73%)
          Length = 1636

 Score =  700 bits (1807), Expect = 0.0
 Identities = 334/518 (64%), Positives = 406/518 (77%), Gaps = 5/518 (0%)
 Frame = +3

Query: 16  IIVSFVAFQCNANGSQISSLVVNAAQGRPMPNTLFGIFYEEINHAGSGGIWAQLVNNSGF 75
           I VS  A + NA+ +   ++  +   G+P+  TLFG+F+EEINHAG+GG+WA+LV+N GF
Sbjct: 93  IAVSLCAIKVNADLNATLTVDAHETSGKPISETLFGLFFEEINHAGAGGLWAELVSNRGF 272

Query: 76  EAAGTRTPSNIFPWTIIGTESSVKLQTELSSCFERNKVALRMDVLCDK-----CPPDGVG 130
           EA G   PSNI PW+IIG ES + ++T+ +SCF+RNK+ALR++VLCD      CP DGVG
Sbjct: 273 EAGGPNIPSNIDPWSIIGNESFINVETDRTSCFDRNKIALRLEVLCDSKGDNICPADGVG 452

Query: 131 VSNPGFWGMNIVQGKKYKVVFFYRSLGSLDMRVAFRDAISGRILASSHIIRHKASKKKGS 190
           V NPGFWGMNI QGKKYKVVF+ RS GSLD+ V+     S  +LAS+ I     S    S
Sbjct: 453 VFNPGFWGMNIEQGKKYKVVFYVRSTGSLDLTVSLTG--SNGVLASNVIT---GSASDFS 617

Query: 191 KWQRVQTILEARASSSNSNLTLTTTKEGTVWLDQVSAMPTDTFKGHGFRKDLVEMLIQLK 250
            W++V+T+LEA+A++ NS L LTTT +G +WLDQVSAMP DT+KG GFR +LV ML  LK
Sbjct: 618 NWKKVETLLEAKATNHNSRLQLTTTAKGVIWLDQVSAMPLDTYKGRGFRSELVGMLADLK 797

Query: 251 PAFLRFPGGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWTDDGLGFFEGLQLAED 310
           P F+RFPGGCFVEG  LRNAFRWK+S+GPWE+RPGH  D+W YWTDDGLG+FE LQLAED
Sbjct: 798 PRFIRFPGGCFVEGEWLRNAFRWKESIGPWEERPGHFGDVWKYWTDDGLGYFEFLQLAED 977

Query: 311 IGALPIWVFNNGISHSDEVDTSVISPFVKEALEGIEFARGSSTSKWGSVRASMGHPKPFN 370
           +GALPIWVFNNG+SH+DEVDTS + PFV+EAL+GIEFARG  TSKWGS+RASMGHP+PFN
Sbjct: 978 LGALPIWVFNNGVSHNDEVDTSAVLPFVQEALDGIEFARGDPTSKWGSIRASMGHPEPFN 1157

Query: 371 LKYVAIGNEDCYKKNYYGNYMAFYKAIKKFYPDIQIISNCPAFKTPLNHPADLYDYHTYP 430
           LKYVA+GNEDC KKNY GNY+ FY AI+  YPDIQIISNC     PL+HPAD+YDYH Y 
Sbjct: 1158LKYVAVGNEDCGKKNYRGNYLKFYSAIRSAYPDIQIISNCDGSSRPLDHPADIYDYHIY- 1334

Query: 431 IDARAMFNAYHDFDKSPRNGPKAFVSEYALIGALQAKYGTLLGAVSEAGFLIGLERNSDH 490
            +A  MF+    F+ + R+GPKAFVSEYA+ G   A  G+LL A++EAGFL+GLE+NSD 
Sbjct: 1335TNANDMFSRSSTFNTALRSGPKAFVSEYAVTGN-DAGTGSLLAAIAEAGFLLGLEKNSDI 1511

Query: 491 VAMASYAPLLVNANDRNWNPDAIVFNSYQAYGTPSYWV 528
           V M SYAPL VNANDR WNPDAIVFNS+Q+YGTPSYWV
Sbjct: 1512VKMVSYAPLFVNANDRRWNPDAIVFNSFQSYGTPSYWV 1625


>CN825301 
          Length = 663

 Score =  343 bits (880), Expect = 5e-95
 Identities = 155/218 (71%), Positives = 184/218 (84%)
 Frame = +2

Query: 191 KWQRVQTILEARASSSNSNLTLTTTKEGTVWLDQVSAMPTDTFKGHGFRKDLVEMLIQLK 250
           +W++++TILEA+ ++  S+L +TT+  G VWLDQVSAMP DT+KGHGFRKDL +M+  L 
Sbjct: 8   RWRKIETILEAKDTNHYSSLQITTSLSGVVWLDQVSAMPLDTYKGHGFRKDLFQMVADLN 187

Query: 251 PAFLRFPGGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWTDDGLGFFEGLQLAED 310
           P F RFPGGCFVEG  LRNAFRWKD+VG WE+RPGH  D W+YWTDDGLG+FEGLQLAED
Sbjct: 188 PRFFRFPGGCFVEGDYLRNAFRWKDTVGSWEERPGHFGDKWHYWTDDGLGYFEGLQLAED 367

Query: 311 IGALPIWVFNNGISHSDEVDTSVISPFVKEALEGIEFARGSSTSKWGSVRASMGHPKPFN 370
           +GALP+WVFNNGISH++EV+T+ I PFV EALEGIEFARGS TS WGS RA+MGHPKPF+
Sbjct: 368 LGALPVWVFNNGISHNEEVNTTEILPFVLEALEGIEFARGSPTSYWGSRRAAMGHPKPFD 547

Query: 371 LKYVAIGNEDCYKKNYYGNYMAFYKAIKKFYPDIQIIS 408
           L+ VA+GNEDC   NY GNYM FY AIK+ YPDIQIIS
Sbjct: 548 LRIVAVGNEDCSHYNYQGNYMKFYNAIKRAYPDIQIIS 661


>TC9804 similar to UP|Q84RC5 (Q84RC5) Alpha-L-arabinofuranosidase, partial
           (16%)
          Length = 658

 Score =  150 bits (380), Expect = 5e-37
 Identities = 74/149 (49%), Positives = 103/149 (68%), Gaps = 1/149 (0%)
 Frame = +3

Query: 502 NANDRNWNPDAIVFNSYQAYGTPSYWVTYMFKESNGATFLNSQLQTPDPGSLIASAILCQ 561
           N+NDR W+PDAIVFNS+Q YGTPSYW+  MF ES+GAT L S LQT    SL+ASAI   
Sbjct: 3   NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQ-SLVASAIEYA 179

Query: 562 SPQNNSTYLKIKIANIGSIPVNLKISLQGYVSK-NLAGSTKTVLTSGNILDENTFAAPKK 620
           + ++   Y+++K+ N GS   + +IS+ G  SK   +GS KTVLT+ N++DEN+F+ P K
Sbjct: 180 NSEDKKNYIRVKVVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNK 359

Query: 621 IAPQTSPLQNPGNEMNVMIPPVSLTVLDM 649
           I PQ +P++    +M V +PP S+T  D+
Sbjct: 360 IVPQPTPIEGASTDMKVELPPHSVTSFDL 446


>AU089495 
          Length = 453

 Score =  114 bits (284), Expect = 6e-26
 Identities = 51/73 (69%), Positives = 58/73 (78%)
 Frame = +2

Query: 383 KKNYYGNYMAFYKAIKKFYPDIQIISNCPAFKTPLNHPADLYDYHTYPIDARAMFNAYHD 442
           +KNY GNY+AFY AI+K YPDIQ+ISNC A   PL+HPADLYDYHTYP +   MFN  H 
Sbjct: 8   EKNYLGNYLAFYNAIRKAYPDIQMISNCDASSKPLDHPADLYDYHTYPNNPSNMFNNAHV 187

Query: 443 FDKSPRNGPKAFV 455
           FDK+PR GPKAFV
Sbjct: 188 FDKTPRKGPKAFV 226



 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 37/59 (62%), Positives = 44/59 (73%)
 Frame = +3

Query: 445 KSPRNGPKAFVSEYALIGALQAKYGTLLGAVSEAGFLIGLERNSDHVAMASYAPLLVNA 503
           + P    +  +SEYAL+G  QAK GTL+G VSEAGFLIGL +NSDHV MA+YAPL V A
Sbjct: 195 RRPAKVQRLLLSEYALVGDQQAKLGTLIGGVSEAGFLIGLXKNSDHVXMAAYAPLFVIA 371


>TC15100 weakly similar to UP|BAC99303 (BAC99303)
           Alpha-L-arabinofuranosidase, partial (15%)
          Length = 586

 Score =  101 bits (251), Expect = 4e-22
 Identities = 53/100 (53%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
 Frame = +1

Query: 552 SLIASAILCQSPQNNSTYLKIKIANIGSIPVNLKISLQGYVSKNL--AGSTKTVLTSGNI 609
           SLIASAI  QS  +   Y++IK+ N G+  VNLKISL G    +L  +GST+TVLTS N+
Sbjct: 7   SLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSANV 186

Query: 610 LDENTFAAPKKIAPQTSPLQNPGNEMNVMIPPVSLTVLDM 649
           +DEN+F+ PKK+ P  S LQN G EMNV++PP S +  D+
Sbjct: 187 MDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDL 306


>AV418250 
          Length = 420

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 617 APKKIAPQTSPLQNPGNEMNVMIPPVSLTV 646
           APK   P+ SP  NP   M+   PP+S +V
Sbjct: 211 APKNSTPRCSPSPNPSTMMSSGPPPLSASV 300


>TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protein, partial
           (47%)
          Length = 929

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
 Frame = +3

Query: 510 PDAIVFNSYQAYGT--PSYWVTYMFKESNGATFLNSQLQTPDPGSLIASAILCQSPQNNS 567
           PD ++ N  QA+ T   +   TYMF+ SN     +   +       +       + QN  
Sbjct: 567 PDGLLING-QAHSTFTVNQGKTYMFRISNVGLSTSINFRIQGHTLKLVEVEGSHTIQNEY 743

Query: 568 TYLKIKIANIGSIPVNLKISLQGYVSKNLAGSTKTVLTSGNILDENTFAAPKKIAP 623
             L + +    S+ V L    + Y        TKTVLT+ ++L  N+ +A     P
Sbjct: 744 DSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKTVLTTTSVLH*NSQSAASGSLP 911


>TC11161 
          Length = 427

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 4   SKACCSFLWLYLIIVSFVAFQCNANGSQISSLVVNA 39
           ++ACCSF  L ++I+  +    N  GS ++SL+ +A
Sbjct: 259 NQACCSFSLLQMLIIQLIK---NQTGSILNSLIKSA 161


>AV773237 
          Length = 488

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 414 KTPLNHPADLYD--YHTYPIDARAMFNAYHDFD 444
           + PL  P   Y+  +HTY  + + +F+ YH  D
Sbjct: 213 RRPLAEPLGQYELCFHTYRTNPQLLFHGYHQLD 115


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,090,660
Number of Sequences: 28460
Number of extensions: 172405
Number of successful extensions: 849
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of query: 650
length of database: 4,897,600
effective HSP length: 96
effective length of query: 554
effective length of database: 2,165,440
effective search space: 1199653760
effective search space used: 1199653760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)